Guide to the Human Genome
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Name: LOC100293422 Sequence: fasta or formatted (159aa) NCBI GI: 239753539
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          8           1
 C cysteine            5.7          9           1
 D aspartate           1.9          3           1
 E glutamate           3.8          6           1
 F phenylalanine       4.4          7           1
 G glycine             8.2         13           2
 H histidine           2.5          4           1
 I isoleucine          3.8          6           1
 K lysine              1.3          2           1
 L leucine            11.3         18           2
 M methionine          0.6          1           1
 N asparagine          1.3          2           2
 P proline             9.4         15           1
 Q glutamine           4.4          7           1
 R arginine           10.1         16           2
 S serine             11.9         19           2
 T threonine          10.1         16           3
 V valine              1.3          2           1
 W tryptophan          1.9          3           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291418          1.000   PREDICTED: hypothetical protein XP_002346557 
LOC100288999          1.000   PREDICTED: hypothetical protein XP_002342393 
MAPK8IP2              0.029   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.029   mitogen-activated protein kinase 8 interacting protei...
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
LOC100132999          0.026   PREDICTED: hypothetical protein 
LOC730256             0.026   PREDICTED: hypothetical protein 
PLEKHA4               0.022   pleckstrin homology domain containing family A memb...
LOC100287981          0.022   PREDICTED: hypothetical protein XP_002344484 
XKR7                  0.022   XK, Kell blood group complex subunit-related family,...
C10orf95              0.022   hypothetical protein LOC79946 
MBD6                  0.019   methyl-CpG binding domain protein 6 
TSG101                0.019   tumor susceptibility gene 101 
KNDC1                 0.019   kinase non-catalytic C-lobe domain (KIND) containin...
SNTB1                 0.016   basic beta 1 syntrophin 
LOC100131098          0.016   PREDICTED: hypothetical protein 
TAF4                  0.016   TBP-associated factor 4 
ZNF831                0.016   zinc finger protein 831 
LOC729920             0.016   notch1-induced protein isoform a 
LOC729920             0.016   notch1-induced protein isoform b 
SOS1                  0.016   son of sevenless homolog 1 
HOXD4                 0.016   homeobox D4 
LOC100128081          0.016   PREDICTED: hypothetical protein 
LMTK3                 0.016   lemur tyrosine kinase 3 
CEP110                0.016   centrosomal protein 110kDa 
DIAPH1                0.013   diaphanous 1 isoform 2 
DIAPH1                0.013   diaphanous 1 isoform 1 
LOC100293036          0.013   PREDICTED: hypothetical protein 
LOC100289065          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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