Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753418
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 405 e-114
gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo ... 273 5e-74
gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo ... 273 5e-74
gi|239757070 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239751580 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo ... 42 4e-04
gi|169210212 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169210418 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169209848 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 39 0.003
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 39 0.003
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 39 0.003
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 39 0.003
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 37 0.008
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 37 0.008
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 36 0.018
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 36 0.024
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 36 0.024
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 36 0.024
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 36 0.024
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.024
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 35 0.040
gi|14719402 homolog of yeast ribosome biogenesis regulatory prot... 35 0.053
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 35 0.053
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 35 0.053
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 34 0.069
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 405 bits (1042), Expect = e-114
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPP 180
QQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPP
Sbjct: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPP 180
Query: 181 RRLDSELPGSPAANK 195
RRLDSELPGSPAANK
Sbjct: 181 RRLDSELPGSPAANK 195
>gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
sapiens]
Length = 153
Score = 273 bits (699), Expect = 5e-74
Identities = 134/149 (89%), Positives = 135/149 (90%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRG 149
QQQDQAE + GG R A G RG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRG 149
>gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo
sapiens]
Length = 153
Score = 273 bits (699), Expect = 5e-74
Identities = 134/149 (89%), Positives = 135/149 (90%)
Query: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL
Sbjct: 1 MVQQKGELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELL 60
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ
Sbjct: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
Query: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRG 149
QQQDQAE + GG R A G RG
Sbjct: 121 QQQDQAEVQSGPEPGGRHGRGARGSGGRG 149
>gi|239757070 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 101 PAAAHHPTRPA------APCRRHH-QQQQQDQAE--ARRRERCGGSGVRV----APGGSR 147
P A HH RP A RRHH QQQ + E ++++ R G G R A G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RGRHGRRGAARAGGTQVR--------GGGPGPELVAARCPPRR 182
+G R +RA G ++ G G G E AR PPRR
Sbjct: 69 QGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRR 111
>gi|239751580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 101 PAAAHHPTRPA------APCRRHH-QQQQQDQAE--ARRRERCGGSGVRV----APGGSR 147
P A HH RP A RRHH QQQ + E ++++ R G G R A G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RGRHGRRGAARAGGTQVR--------GGGPGPELVAARCPPRR 182
+G R +RA G ++ G G G E AR PPRR
Sbjct: 69 QGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRR 111
>gi|239746092 PREDICTED: hypothetical protein XP_002343656 [Homo
sapiens]
Length = 195
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/103 (34%), Positives = 45/103 (43%), Gaps = 21/103 (20%)
Query: 101 PAAAHHPTRPA------APCRRHH-QQQQQDQAE--ARRRERCGGSGVRV----APGGSR 147
P A HH RP A RRHH QQQ + E ++++ R G G R A G
Sbjct: 9 PPATHHHMRPGQGEGLGADERRHHVQQQHEGHEEGGSQQQHRSAGPGARSGRAGAAGQGA 68
Query: 148 RGRHGRRGAARAGGTQVR--------GGGPGPELVAARCPPRR 182
+G R +RA G ++ G G G E AR PPRR
Sbjct: 69 QGWAAARRESRAAGGRLECLGLRAGAGRGGGEEEEPARAPPRR 111
>gi|169210212 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/138 (35%), Positives = 59/138 (42%), Gaps = 34/138 (24%)
Query: 76 GAQGLLGHIGAELLVGERHEF--AWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRER 133
GA GL + A+ LVGE R+P A P A +RH QQ Q + E
Sbjct: 14 GAVGL--QVEADQLVGEVQGVHGQQRAPRDA-----PVALAQRHRQQLQLELLEL----- 61
Query: 134 CGGS-------GVRVAPGGSR---RGRHGRRGAARAGGTQVRGGGPGPEL---------V 174
GG GV AP GSR R R R + R GG+++RGG P L
Sbjct: 62 LGGQVLQRIQDGVARAPHGSRIPGRCRRSPRCSRRPGGSRLRGGTWTPRLPPTLVSRLPA 121
Query: 175 AARCPPRRLDSEL-PGSP 191
RCPP + S L P SP
Sbjct: 122 PVRCPPAKGASLLHPWSP 139
>gi|169210418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/138 (35%), Positives = 59/138 (42%), Gaps = 34/138 (24%)
Query: 76 GAQGLLGHIGAELLVGERHEF--AWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRER 133
GA GL + A+ LVGE R+P A P A +RH QQ Q + E
Sbjct: 14 GAVGL--QVEADQLVGEVQGVHGQQRAPRDA-----PVALAQRHRQQLQLELLEL----- 61
Query: 134 CGGS-------GVRVAPGGSR---RGRHGRRGAARAGGTQVRGGGPGPEL---------V 174
GG GV AP GSR R R R + R GG+++RGG P L
Sbjct: 62 LGGQVLQRIQDGVARAPHGSRIPGRCRRSPRCSRRPGGSRLRGGTWTPRLPPTLVSRLPA 121
Query: 175 AARCPPRRLDSEL-PGSP 191
RCPP + S L P SP
Sbjct: 122 PVRCPPAKGASLLHPWSP 139
>gi|169209848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/138 (35%), Positives = 59/138 (42%), Gaps = 34/138 (24%)
Query: 76 GAQGLLGHIGAELLVGERHEF--AWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRER 133
GA GL + A+ LVGE R+P A P A +RH QQ Q + E
Sbjct: 14 GAVGL--QVEADQLVGEVQGVHGQQRAPRDA-----PVALAQRHRQQLQLELLEL----- 61
Query: 134 CGGS-------GVRVAPGGSR---RGRHGRRGAARAGGTQVRGGGPGPEL---------V 174
GG GV AP GSR R R R + R GG+++RGG P L
Sbjct: 62 LGGQVLQRIQDGVARAPHGSRIPGRCRRSPRCSRRPGGSRLRGGTWTPRLPPTLVSRLPA 121
Query: 175 AARCPPRRLDSEL-PGSP 191
RCPP + S L P SP
Sbjct: 122 PVRCPPAKGASLLHPWSP 139
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEARRRER--CGGSGVRVAPGGSRRGRHGRRGAARAG 160
AA P PA ++ +D+AEA ER G G R GGS G G A AG
Sbjct: 2 AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAG 61
Query: 161 GTQVRGGGPGPEL 173
G GGPG L
Sbjct: 62 GC----GGPGGAL 70
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 103 AAHHPTRPAAPCRRHHQQQQQDQAEARRRER--CGGSGVRVAPGGSRRGRHGRRGAARAG 160
AA P PA ++ +D+AEA ER G G R GGS G G A AG
Sbjct: 2 AAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAG 61
Query: 161 GTQVRGGGPGPEL 173
G GGPG L
Sbjct: 62 GC----GGPGGAL 70
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 38.9 bits (89), Expect = 0.003
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 85 GAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPG 144
G+ L VG A+R + P RP P RRH +R RER GS R P
Sbjct: 48 GSPLAVGG----AFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGS--RDPPA 101
Query: 145 GSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G R RG + G Q G GP PP + LP S N
Sbjct: 102 GP-VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRN 150
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 38.9 bits (89), Expect = 0.003
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 85 GAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPG 144
G+ L VG A+R + P RP P RRH +R RER GS R P
Sbjct: 48 GSPLAVGG----AFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGS--RDPPA 101
Query: 145 GSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G R RG + G Q G GP PP + LP S N
Sbjct: 102 GP-VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRN 150
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 38.9 bits (89), Expect = 0.003
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 85 GAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPG 144
G+ L VG A+R + P RP P RRH +R RER GS R P
Sbjct: 48 GSPLAVGG----AFRVSSPRPFPPRPERPSRRHRAGCGAHGPGSRGRERRRGS--RDPPA 101
Query: 145 GSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G R RG + G Q G GP PP + LP S N
Sbjct: 102 GP-VARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATLPPSRKRN 150
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 37.4 bits (85), Expect = 0.008
Identities = 51/188 (27%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 6 GELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSG-----CVLRNDVWIVIGGELL 60
GE + K + SP P + + + PQ G + GE
Sbjct: 327 GEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEAR 386
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
LG A+ GA+ LG G + G+ W PA +P A R
Sbjct: 387 ARLGQAAAQMRREGWGARAKLGGRG---VCGKCGPGPWDDPARRRNP---GAAARAKLAG 440
Query: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPP 180
Q+ +A AR + G G PG R GRRG G R GG AA P
Sbjct: 441 QRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGV----GNPERWGGE----AAAPRPS 492
Query: 181 RRLDSELP 188
R L ELP
Sbjct: 493 RVLLPELP 500
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 37.4 bits (85), Expect = 0.008
Identities = 51/188 (27%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 6 GELSRGGGKHIQPTSPSPRHYGHIGQNTELCPQTATVSG-----CVLRNDVWIVIGGELL 60
GE + K + SP P + + + PQ G + GE
Sbjct: 327 GEGAGSRFKRLHDESPRPNFPQSLAEGLGVSPQAGARVGEAREAVTTHERAHLDREGEAR 386
Query: 61 EALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQ 120
LG A+ GA+ LG G + G+ W PA +P A R
Sbjct: 387 ARLGQAAAQMRREGWGARAKLGGRG---VCGKCGPGPWDDPARRRNP---GAAARAKLAG 440
Query: 121 QQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPP 180
Q+ +A AR + G G PG R GRRG G R GG AA P
Sbjct: 441 QRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGV----GNPERWGGE----AAAPRPS 492
Query: 181 RRLDSELP 188
R L ELP
Sbjct: 493 RVLLPELP 500
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEARRRERC 134
G G +GA L G W+ PAAA P PAA + ++ + +A
Sbjct: 196 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA------EGEEDHEGDADGAHTG 249
Query: 135 GGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGG 167
GG G G R G G RGAA G V GG
Sbjct: 250 GGHGWHCGRSGGRGG--GERGAAGPGALAVVGG 280
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEARRRERC 134
G G +GA L G W+ PAAA P PAA + ++ + +A
Sbjct: 179 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA------EGEEDHEGDADGAHTG 232
Query: 135 GGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGG 167
GG G G R G G RGAA G V GG
Sbjct: 233 GGHGWHCGRSGGRGG--GERGAAGPGALAVVGG 263
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHP-TRPAAPCRRHHQQQQQDQAEARRRERC 134
G G +GA L G W+ PAAA P PAA + ++ + +A
Sbjct: 371 GQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAA------EGEEDHEGDADGAHTG 424
Query: 135 GGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGG 167
GG G G R G G RGAA G V GG
Sbjct: 425 GGHGWHCGRSGGRGG--GERGAAGPGALAVVGG 455
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 36.2 bits (82), Expect = 0.018
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 110 PAAPCRRHHQQQQQDQAEARRRERC---------GGSGVRVAPGGSRRGRHGRRGAARAG 160
P A RR +Q+Q E RRR GG G R GGS GR +R
Sbjct: 7 PRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNA 66
Query: 161 GTQVRGGGPG 170
G Q GGG G
Sbjct: 67 GDQHGGGGGG 76
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 35.8 bits (81), Expect = 0.024
Identities = 36/123 (29%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 55 IGGELLEALGAASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPC 114
+GG +E + I+ GA+G G GA AW + P
Sbjct: 4 VGGGDVEDVTPRPGGCQISGRGARGCNGIPGAA---------AWEAALPRRRP------- 47
Query: 115 RRHHQQQQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELV 174
RRH + +A R R G P GSR G GR A G RG G PE V
Sbjct: 48 RRHPSVNPRSRAAGSPRTR--GRRTEERPSGSRLGDRGRGRALPGGRLGGRGRGRAPERV 105
Query: 175 AAR 177
R
Sbjct: 106 GGR 108
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 35.8 bits (81), Expect = 0.024
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCG 135
G +G LG IG G+ R P +P +P R Q + D RR G
Sbjct: 331 GQKGKLGRIGPPGCKGDPGN---RGPDG--YPGEAGSPGERGDQGGKGDPGRPGRRGPPG 385
Query: 136 GSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G + +G G GA + G + GGPGP P RR D GSP ++
Sbjct: 386 EIGAK-----GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGE-PGRRGDPGTKGSPGSD 438
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 135 GGSGVRVAPGG----------SRRGRHGRRGAARAGGTQVRGGGPGPE 172
G GV+ A GG RRG G +G+ + G + G PGPE
Sbjct: 403 GSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPE 450
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 35.8 bits (81), Expect = 0.024
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCG 135
G +G LG IG G+ R P +P +P R Q + D RR G
Sbjct: 331 GQKGKLGRIGPPGCKGDPGN---RGPDG--YPGEAGSPGERGDQGGKGDPGRPGRRGPPG 385
Query: 136 GSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G + +G G GA + G + GGPGP P RR D GSP ++
Sbjct: 386 EIGAK-----GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGE-PGRRGDPGTKGSPGSD 438
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 135 GGSGVRVAPGG----------SRRGRHGRRGAARAGGTQVRGGGPGPE 172
G GV+ A GG RRG G +G+ + G + G PGPE
Sbjct: 403 GSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPE 450
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 35.8 bits (81), Expect = 0.024
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCG 135
G +G LG IG G+ R P +P +P R Q + D RR G
Sbjct: 331 GQKGKLGRIGPPGCKGDPGN---RGPDG--YPGEAGSPGERGDQGGKGDPGRPGRRGPPG 385
Query: 136 GSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLDSELPGSPAAN 194
G + +G G GA + G + GGPGP P RR D GSP ++
Sbjct: 386 EIGAK-----GSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGE-PGRRGDPGTKGSPGSD 438
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 10/48 (20%)
Query: 135 GGSGVRVAPGG----------SRRGRHGRRGAARAGGTQVRGGGPGPE 172
G GV+ A GG RRG G +G+ + G + G PGPE
Sbjct: 403 GSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPE 450
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 35.8 bits (81), Expect = 0.024
Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 18 PTSPSPRHYGHIGQNTELCPQTATVSGCVLRNDVWIVIGGELLEALGAASDLAFIASAGA 77
P P G G+ E C ++V G L+ + GA+ D+ G
Sbjct: 538 PARGDPGIQGIKGEKGEPCLSCSSVVGAQ-----------HLVSSTGASGDVGS-PGFGL 585
Query: 78 QGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAA----------PCRRHHQQQQQDQAE 127
GL G G L GE+ F PA + P P PC +
Sbjct: 586 PGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGD 645
Query: 128 ARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPG 170
R G SG + PG G G++G A G + + G G
Sbjct: 646 VRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAG 688
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 35.0 bits (79), Expect = 0.040
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 76 GAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPAAPCRRHH-QQQQQDQAEARRRERC 134
G+QG G GA GE+ P P P + ++ + Q+ + E R+ R
Sbjct: 1491 GSQGSPGSRGAPGQYGEKG-----------FPGDPGNPGQNNNIKGQKGSKGEQGRQGRS 1539
Query: 135 GGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGP 171
G GV+ +P S RG GR G G G PGP
Sbjct: 1540 GQKGVQGSP--SSRGSRGREGQRGLRGVSGEPGNPGP 1574
>gi|14719402 homolog of yeast ribosome biogenesis regulatory protein
RRS1 [Homo sapiens]
Length = 365
Score = 34.7 bits (78), Expect = 0.053
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 119 QQQQQDQAEARRRERCGGSGVRVA----PGGSRRGRHGRRGAARAGGT--QVRGGGPG 170
Q +++DQ EA +R + G R PGG R+G +G R GG ++ G PG
Sbjct: 291 QMREEDQEEAAKRRKMSQKGKRKGGRQGPGGKRKGGPPSQGGKRKGGLGGKMNSGPPG 348
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 34.7 bits (78), Expect = 0.053
Identities = 29/71 (40%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 127 EARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQVRGGGPGPELVAARCPPRRLD-- 184
EA R +R VR A GG G G G GG V GGG G R P R LD
Sbjct: 45 EAGRDDR-SSPAVRAAGGG---GGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRELDMG 100
Query: 185 ----SELPGSP 191
S PGSP
Sbjct: 101 AAERSREPGSP 111
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 34.7 bits (78), Expect = 0.053
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 105 HHPTRPAAPCRRHHQQQQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRRGAARAGGTQV 164
HH P P + + Q++ D AR R++ SR GR A G+
Sbjct: 2215 HHHHHPPPPDKDRYAQERPDHGRARARDQ----------RWSRSPSEGREHMAHRQGSSS 2264
Query: 165 RGGGPGPELVAARCPPRRLDSELPGSPA 192
G P P + PRR +LP +P+
Sbjct: 2265 VSGSPAPS-TSGTSTPRRGRRQLPQTPS 2291
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 115 RRHHQQQQQDQAEARRRER------CGGSGVRVAPGGSRRGRHGRRGA 156
RR ++ +D+AE R R R GG G P G R R R GA
Sbjct: 962 RRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGA 1009
Score = 27.7 bits (60), Expect = 6.5
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 113 PCRRHHQQQQQDQAEARRRERCGGSGVRVAPGGSRRGRHGRR----GAARAGGTQVRGGG 168
P ++ QQQQQ Q R R SG R PG + G R G + ++
Sbjct: 2312 PQQQQQQQQQQQQQAVARPGRAATSGPRRYPGPTAEPLAGDRPPTGGHSSGRSPRMERRV 2371
Query: 169 PGP 171
PGP
Sbjct: 2372 PGP 2374
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 34.3 bits (77), Expect = 0.069
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 101 PAAAHHPTRPAAPCRRHHQQQQQDQAEARRRERCGGSG---------VRVAPGGSRRGRH 151
PA A P C H A RR +R G+G VR AP G RR R
Sbjct: 76 PAPAIAPGGGGGGCGAQHW------AAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRL 129
Query: 152 GRRGAARAGGTQVRGGGPGPELVAA 176
RR R G R PGP+ A
Sbjct: 130 QRRRGGRGGRGAGRARKPGPDRAGA 154
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,860,987
Number of Sequences: 37866
Number of extensions: 542543
Number of successful extensions: 4214
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 3547
Number of HSP's gapped (non-prelim): 891
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.