Guide to the Human Genome
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Name: LOC100289945 Sequence: fasta or formatted (153aa) NCBI GI: 239747978
Description:

PREDICTED: hypothetical protein XP_002346487

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         17           3
 C cysteine            2.0          3           1
 D aspartate           2.0          3           1
 E glutamate           5.9          9           1
 F phenylalanine       1.3          2           1
 G glycine            16.3         25           3
 H histidine           6.5         10           2
 I isoleucine          3.9          6           1
 K lysine              1.3          2           1
 L leucine             8.5         13           2
 M methionine          0.7          1           1
 N asparagine          1.3          2           1
 P proline             6.5         10           1
 Q glutamine           8.5         13           5
 R arginine            7.8         12           2
 S serine              5.9          9           1
 T threonine           3.3          5           1
 V valine              5.2          8           1
 W tryptophan          1.3          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346487 
LOC100288913          1.000   PREDICTED: hypothetical protein XP_002342331 
LOC100291593          0.841   PREDICTED: similar to hCG2012845 
LOC100293935          0.041   PREDICTED: hypothetical protein 
LOC100287289          0.041   PREDICTED: hypothetical protein 
LOC100287289          0.041   PREDICTED: hypothetical protein XP_002343656 
LOC100131774          0.034   PREDICTED: hypothetical protein 
LOC100131774          0.034   PREDICTED: hypothetical protein 
LOC100131774          0.034   PREDICTED: hypothetical protein 
FOXA2                 0.024   forkhead box A2 isoform 2 
FOXA2                 0.024   forkhead box A2 isoform 1 
LOC339742             0.020   PREDICTED: hypothetical protein 
COL16A1               0.020   alpha 1 type XVI collagen precursor 
KCNG2                 0.020   potassium voltage-gated channel, subfamily G, member ...
MLL4                  0.020   myeloid/lymphoid or mixed-lineage leukemia 4 
MPND                  0.017   MPN domain containing isoform 2 
MPND                  0.017   MPN domain containing isoform 1 
CKAP4                 0.017   cytoskeleton-associated protein 4 
LOC100290504          0.017   PREDICTED: hypothetical protein XP_002346416 
LOC100287358          0.017   PREDICTED: hypothetical protein XP_002342116 
SYT3                  0.017   synaptotagmin III 
SYT3                  0.017   synaptotagmin III 
SYT3                  0.017   synaptotagmin III 
LOC649201             0.017   PREDICTED: similar to paraneoplastic antigen MA1 [H...
EVX2                  0.017   even-skipped homeobox 2 
C10orf71              0.017   hypothetical protein LOC118461 isoform 2 
C10orf71              0.017   hypothetical protein LOC118461 isoform 1 
GLG1                  0.014   golgi apparatus protein 1 isoform 3 
GLG1                  0.014   golgi apparatus protein 1 isoform 2 
GLG1                  0.014   golgi apparatus protein 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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