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Search of human proteins with 239753369
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 536 e-153
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 536 e-153
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 523 e-149
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 46 3e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 8e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 43 3e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 43 3e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 43 3e-04
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 43 3e-04
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 43 3e-04
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 43 3e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 7e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 42 7e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 0.001
gi|223941923 OTU domain containing 1 [Homo sapiens] 40 0.002
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 40 0.002
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 40 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.003
gi|23510413 sorting nexin 26 [Homo sapiens] 40 0.003
gi|41281612 zinc finger protein 828 [Homo sapiens] 39 0.004
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens] 39 0.004
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 39 0.004
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 39 0.005
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 39 0.005
gi|163965366 nascent polypeptide-associated complex alpha subuni... 39 0.005
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 39 0.006
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 39 0.006
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 38 0.008
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 536 bits (1380), Expect = e-153
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
Query: 241 ESPAQFNISSENLPVRKENIHK 262
ESPAQFNISSENLPVRKENIHK
Sbjct: 241 ESPAQFNISSENLPVRKENIHK 262
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 536 bits (1380), Expect = e-153
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
Query: 241 ESPAQFNISSENLPVRKENIHK 262
ESPAQFNISSENLPVRKENIHK
Sbjct: 241 ESPAQFNISSENLPVRKENIHK 262
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 523 bits (1347), Expect = e-149
Identities = 256/257 (99%), Positives = 256/257 (99%)
Query: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL
Sbjct: 1 MPSVWAVETTPLNTKVTIGSLNATKVHLEMRRKFGVRERSALPAAVLNSGARVWPSASAL 60
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
GL APPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR
Sbjct: 61 GLAAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG
Sbjct: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARG 180
Query: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP
Sbjct: 181 AHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
Query: 241 ESPAQFNISSENLPVRK 257
ESPAQFNISSENLPVRK
Sbjct: 241 ESPAQFNISSENLPVRK 257
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 46.6 bits (109), Expect = 2e-05
Identities = 58/198 (29%), Positives = 72/198 (36%), Gaps = 28/198 (14%)
Query: 54 WPSASALGLTAPPKDAEDRARPASGLRGA----RVLSEGREPRASLRVQVRPGLDVAAPG 109
W S LG P RG R ++GR P S R R V G
Sbjct: 24 WASWRLLGCIPSPCAGRGLEALGRDWRGTVAEPRPEAQGRVP--SFRSNARRVRSVRGGG 81
Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPG-------RRARARAGTGFPF 162
V + P+PP A G P A AA A P P RR RAR G
Sbjct: 82 V---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPGIRP 136
Query: 163 FPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPA 222
P P P P + P+ ARG W +SSP+ +G P C P+P+
Sbjct: 137 SPSPSPSP-SPSPSPARGGR-------WTTCASSSPALPGTDGVLRRMSPVCPPSPV--V 186
Query: 223 LALLKTSSSHQSLASPYP 240
LA L +S + +P P
Sbjct: 187 LACLVSSPHVPASLTPPP 204
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 46.2 bits (108), Expect = 3e-05
Identities = 50/162 (30%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 86 SEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGA 145
++GR P S R R V GV + P+PP A G P A AA A P
Sbjct: 60 AQGRVP--SFRSNARRVRSVRGGGV---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSL 112
Query: 146 EVPG-------RRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
P RR RAR G P P P P + P+ ARG W +SSP
Sbjct: 113 RKPSPSPSPSLRRRRARNSPGIRPSPSPSPSP-SPSPSPARGGR-------WTTCASSSP 164
Query: 199 SCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
+ +G P C P+P+ LA L +S + +P P
Sbjct: 165 ALPGTDGVLRRMSPVCPPSPV--VLACLVSSPHVPASLTPPP 204
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 46.2 bits (108), Expect = 3e-05
Identities = 50/162 (30%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 86 SEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGA 145
++GR P S R R V GV + P+PP A G P A AA A P
Sbjct: 60 AQGRVP--SFRSNARRVRSVRGGGV---TAPAPP--DAEVGSGRPAGLAARAAAAAPRSL 112
Query: 146 EVPG-------RRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
P RR RAR G P P P P + P+ ARG W +SSP
Sbjct: 113 RKPSPSPSPSLRRRRARNSPGIRPSPSPSPSP-SPSPSPARGGR-------WTTCASSSP 164
Query: 199 SCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPYP 240
+ +G P C P+P+ LA L +S + +P P
Sbjct: 165 ALPGTDGVLRRMSPVCPPSPV--VLACLVSSPHVPASLTPPP 204
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 44.7 bits (104), Expect = 8e-05
Identities = 60/213 (28%), Positives = 79/213 (37%), Gaps = 28/213 (13%)
Query: 40 SALPAAVLNSGARVWPSASALGL--TAPPKDAEDRARPASGLRGARVLSEGREPR----- 92
S PA +G P+A A G AP RARP G R P
Sbjct: 64 SGSPAGAAGAG----PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGP 119
Query: 93 ASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRA 152
A ++RP + +A + + + P P GP PA AALA
Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA------------ 167
Query: 153 RARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS-PTSSPSCSEGNGESAGND 211
ARAG G PGP P P PA A G +A S ++P+ S N A
Sbjct: 168 -ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALL 226
Query: 212 PNCQPAPLQPALALLKTSSSHQSLASPYPESPA 244
P P P P +++T + A P P +P+
Sbjct: 227 P--LPKPAAPG-TVIQTPPFVGAAAPPAPAAPS 256
Score = 35.0 bits (79), Expect = 0.066
Identities = 56/201 (27%), Positives = 73/201 (36%), Gaps = 36/201 (17%)
Query: 56 SASALGLTAPPKDAEDRARPASGL--RGARVLSEGREPRA-SLRVQVRPGLDVAAPGVCS 112
+A L +A ++ A PA L G L +P A +Q P + AAP +
Sbjct: 194 AAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPP--A 251
Query: 113 LSCPSPPRSSAHPGPRG--PLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRP 170
+ PSPP + A P P P A LARP PG P
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPAPATLARP---------------------PGHPAGP 290
Query: 171 RTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPN---CQPAP----LQPAL 223
T PA A A GGSA +P +P+ G S P PAP P
Sbjct: 291 PTAAPAVPPPAAAQNGGSA-GAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349
Query: 224 ALLKTSSSHQSLASPYPESPA 244
+ + Q+LA+ P S A
Sbjct: 350 VVQAAPPAAQTLAASGPASTA 370
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 35 GVRERSALPAAVLNSGARVWPSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
G R LP G R A GL PP ED R G G R L PR
Sbjct: 470 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 525
Query: 95 LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
L + PG+ PGV + P P+ S PGP G L P GA P
Sbjct: 526 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 584
Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
+ G P PG D PP H
Sbjct: 585 EKGPQGKPGLPGMPGSD-----GPPGH 606
Score = 38.5 bits (88), Expect = 0.006
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
+V PG P P+ P G GP P L+ + +PG R + GF
Sbjct: 672 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 729
Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
P FPG R + G RG G +R P + S G S G+ P+ P
Sbjct: 730 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 787
Score = 28.5 bits (62), Expect = 6.2
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
P HPGP GP P +PG + G PGP P PA
Sbjct: 852 PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 896
Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
RG RG P + G G P+ P P
Sbjct: 897 LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 927
Score = 28.1 bits (61), Expect = 8.1
Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)
Query: 74 RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
R A+G GA+ S G P PG L P P + PGP+GP P
Sbjct: 766 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 810
Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
P +PG + R GF GP P P A G G
Sbjct: 811 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 861
Query: 194 PTSSPSCSEGNGESAGND 211
P P +G +AG +
Sbjct: 862 P--GPPGEQGLPGTAGKE 877
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 35 GVRERSALPAAVLNSGARVWPSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
G R LP G R A GL PP ED R G G R L PR
Sbjct: 449 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 504
Query: 95 LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
L + PG+ PGV + P P+ S PGP G L P GA P
Sbjct: 505 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 563
Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
+ G P PG D PP H
Sbjct: 564 EKGPQGKPGLPGMPGSD-----GPPGH 585
Score = 38.5 bits (88), Expect = 0.006
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
+V PG P P+ P G GP P L+ + +PG R + GF
Sbjct: 651 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 708
Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
P FPG R + G RG G +R P + S G S G+ P+ P
Sbjct: 709 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 766
Score = 28.5 bits (62), Expect = 6.2
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
P HPGP GP P +PG + G PGP P PA
Sbjct: 831 PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 875
Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
RG RG P + G G P+ P P
Sbjct: 876 LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 906
Score = 28.1 bits (61), Expect = 8.1
Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)
Query: 74 RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
R A+G GA+ S G P PG L P P + PGP+GP P
Sbjct: 745 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 789
Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
P +PG + R GF GP P P A G G
Sbjct: 790 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 840
Query: 194 PTSSPSCSEGNGESAGND 211
P P +G +AG +
Sbjct: 841 P--GPPGEQGLPGTAGKE 856
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/147 (31%), Positives = 51/147 (34%), Gaps = 14/147 (9%)
Query: 35 GVRERSALPAAVLNSGARVWPSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRAS 94
G R LP G R A GL PP ED R G G R L PR
Sbjct: 556 GDRGFDGLPGLPGEKGHR--GDTGAQGLPGPP--GEDGERGDDGEIGPRGLPGESGPRGL 611
Query: 95 LRVQVRPGLDVAAPGVCSLSCPSPPRSS----AHPGPRGPLFPALLAALARPHGAEVPGR 150
L + PG+ PGV + P P+ S PGP G L P GA P
Sbjct: 612 LGPKGPPGIP-GPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHG 670
Query: 151 RARARAGTGFPFFPGPDPRPRTRPPAH 177
+ G P PG D PP H
Sbjct: 671 EKGPQGKPGLPGMPGSD-----GPPGH 692
Score = 38.5 bits (88), Expect = 0.006
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 104 DVAAPGVCSLSCPSPPRSSAHP-GPRGPLFPALLAALARPHGAEVPGRRARA--RAGTGF 160
+V PG P P+ P G GP P L+ + +PG R + GF
Sbjct: 758 EVGVPGSRGEDGPEGPKGRTGPTGDPGP--PGLMGEKGKLGVPGLPGYPGRQGPKGSLGF 815
Query: 161 PFFPGPDPRPRTRPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQP 216
P FPG R + G RG G +R P + S G S G+ P+ P
Sbjct: 816 PGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 873
Score = 28.5 bits (62), Expect = 6.2
Identities = 27/101 (26%), Positives = 31/101 (30%), Gaps = 25/101 (24%)
Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
P HPGP GP P +PG + G PGP P PA
Sbjct: 938 PMGERGHPGPPGP-----------PGEQGLPGTAGKE----GTKGDPGPPGAPGKDGPAG 982
Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
RG RG P + G G P+ P P
Sbjct: 983 LRGFPGERG----------LPGTAGGPGLKGNEGPSGPPGP 1013
Score = 28.1 bits (61), Expect = 8.1
Identities = 37/138 (26%), Positives = 46/138 (33%), Gaps = 26/138 (18%)
Query: 74 RPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFP 133
R A+G GA+ S G P PG L P P + PGP+GP P
Sbjct: 852 RGATGKSGAKGTSGGDGPHGP-------------PGERGL--PGPQGPNGFPGPKGPPGP 896
Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRS 193
P +PG + R GF GP P P A G G
Sbjct: 897 --------PGKDGLPGHPGQ-RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGP 947
Query: 194 PTSSPSCSEGNGESAGND 211
P P +G +AG +
Sbjct: 948 P--GPPGEQGLPGTAGKE 963
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 18/200 (9%)
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
G AP ++ P+S LS G+ P L + P P V +++ P PP
Sbjct: 731 GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 788
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
P P ++ A PH P + A A + P P P P PP
Sbjct: 789 LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 839
Query: 180 GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
+ A G S +SS S S + S+ + P+ P PL A+ SS +L +
Sbjct: 840 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 894
Query: 240 PE-SPAQFNISSENLPVRKE 258
P S Q + +E L R+E
Sbjct: 895 PMISFKQEELENEGLKPREE 914
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 18/200 (9%)
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
G AP ++ P+S LS G+ P L + P P V +++ P PP
Sbjct: 932 GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 989
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
P P ++ A PH P + A A + P P P P PP
Sbjct: 990 LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
Query: 180 GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
+ A G S +SS S S + S+ + P+ P PL A+ SS +L +
Sbjct: 1041 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 1095
Query: 240 PE-SPAQFNISSENLPVRKE 258
P S Q + +E L R+E
Sbjct: 1096 PMISFKQEELENEGLKPREE 1115
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 18/200 (9%)
Query: 61 GLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPR 120
G AP ++ P+S LS G+ P L + P P V +++ P PP
Sbjct: 932 GFPAPTVESTPDVCPSSPALQTPSLSSGQLP--PLLIPTDPSSPPPCPPVLTVATPPPPL 989
Query: 121 SSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFF-PGPDPRPRTRPPAHAR 179
P P ++ A PH P + A A + P P P P PP
Sbjct: 990 LPTVPLPAP-------SSSASPHPC--PSPLSNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
Query: 180 GAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLASPY 239
+ A G S +SS S S + S+ + P+ P PL A+ SS +L +
Sbjct: 1041 MSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPS--PPPLS---AISSVVSSGDNLEASL 1095
Query: 240 PE-SPAQFNISSENLPVRKE 258
P S Q + +E L R+E
Sbjct: 1096 PMISFKQEELENEGLKPREE 1115
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.6 bits (96), Expect = 7e-04
Identities = 47/190 (24%), Positives = 61/190 (32%), Gaps = 39/190 (20%)
Query: 76 ASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPAL 135
+ G RG R PR + PG+ PG P PP +HPGP G
Sbjct: 139 SQGPRGERGPKGRPGPRGPQGIDGEPGVP-GQPGA-----PGPPGHPSHPGPDG------ 186
Query: 136 LAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRG--------- 186
L+RP A++ G ++ G+ PG R P +G G
Sbjct: 187 ---LSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPG 243
Query: 187 -----GSAWKRSPTSSPSCSEGNGESAGN----------DPNCQPAPLQPALALLKTSSS 231
G R P P +GE N P + P P L LK
Sbjct: 244 DPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRG 303
Query: 232 HQSLASPYPE 241
H+ L P E
Sbjct: 304 HKGLEGPKGE 313
Score = 31.2 bits (69), Expect = 0.96
Identities = 44/168 (26%), Positives = 51/168 (30%), Gaps = 14/168 (8%)
Query: 61 GLTAPPKD-AEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCS-LSCPSP 118
GL PP +R +G GA + + P V+ PG PG P P
Sbjct: 822 GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG----EPGQKGDAGSPGP 877
Query: 119 PRSSAHPGPRGPL-FPALLAALAR---PHGAEVPGRRARA--RAGTGFPFFPGPDPRPRT 172
+ PGP GP P L P PG R G P GP P
Sbjct: 878 QGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGK 937
Query: 173 RPPAHARGAHAHRG--GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
P RG G G P P GE P+ P P
Sbjct: 938 EGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGP 985
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/144 (25%), Positives = 44/144 (30%), Gaps = 27/144 (18%)
Query: 118 PPRSSAHPGPRGPL------FPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPR 171
PP + PGP GPL P L HG A G G PG D +P
Sbjct: 919 PPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPG 978
Query: 172 TRPPAHARGAHAHRG-----------GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQ 220
P G RG G P +P G + P P P+
Sbjct: 979 PDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGP---PGPVG 1035
Query: 221 PALALLKTSSSHQSLASPYPESPA 244
P S+ + P PE PA
Sbjct: 1036 P-------PGSNGPVGEPGPEGPA 1052
Score = 29.3 bits (64), Expect = 3.6
Identities = 31/109 (28%), Positives = 37/109 (33%), Gaps = 8/109 (7%)
Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
PP S +PG RG P A P G P + + G P G P + A
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQG---PDGQPGVKGEPGEPGQKGDAGSPGPQGLAG 882
Query: 178 ARGAHAHRGGSAWKRS-PTSSPSCSEGNGESAGN----DPNCQPAPLQP 221
+ G H G K T P + G SAG P P P P
Sbjct: 883 SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGP 931
Score = 28.5 bits (62), Expect = 6.2
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 18/121 (14%)
Query: 118 PPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAH 177
P +PGP GP+ P + G E P P PGP P PP H
Sbjct: 1183 PSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP------------PGEPGPPGPP--GPPGH 1228
Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTSSSHQSLAS 237
A G + P P +E ++A +D N + L L SS +++ S
Sbjct: 1229 LTAALGDIMGHYDESMPDPLPEFTE--DQAAPDDKNKTDPGVHATLKSL--SSQIETMRS 1284
Query: 238 P 238
P
Sbjct: 1285 P 1285
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 41.6 bits (96), Expect = 7e-04
Identities = 62/228 (27%), Positives = 76/228 (33%), Gaps = 38/228 (16%)
Query: 35 GVRERSALPAAVLNSGARVWPS-------ASALGLTAPPKD----AEDRARPASGLRGAR 83
GV E A P G+R P+ A+A + PP RA S LR A
Sbjct: 15 GVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAAP 74
Query: 84 VLSEGREPRASLRVQVRPGL--------DVAAPGVCSLSCPSPPRSSAHPGPRGPLFPAL 135
+ PR R G AA + P+ R PGP PL P
Sbjct: 75 AAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRS 134
Query: 136 LAALAR-----PHGAEV---PGRRARARAGTGFPFFPGP----------DPRPRTRPPAH 177
R P + PG R RA++ G P P PR RP A
Sbjct: 135 RHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAP 194
Query: 178 ARGAHAHRGGSAWKRSPTSSPSCSEGNGE-SAGNDPNCQPAPLQPALA 224
G H R + + S PS NG+ +AG QP P P A
Sbjct: 195 RPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQPPPPPCA 242
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/163 (28%), Positives = 57/163 (34%), Gaps = 27/163 (16%)
Query: 50 GARVWPSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPG 109
GA +P A+ G PP + + P G G G+ PR RPG +V PG
Sbjct: 872 GATGFPGAA--GRVGPPGPSGNAGPP--GPPGPAGKEGGKGPRGETGPAGRPG-EVGPPG 926
Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA-----RAGTGFPFFP 164
P P PG GP A P + G+R R GFP P
Sbjct: 927 P-----PGPAGEKGSPGADGPA-----GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLP 976
Query: 165 GPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGES 207
GP P + P+ A G G P P + GES
Sbjct: 977 GPSGEPGKQGPSGASGERGPPG-------PMGPPGLAGPPGES 1012
Score = 37.4 bits (85), Expect = 0.013
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 43 PAAVLNSGARVWPSASALGLTAPPKDA-EDRARPASGLRGARVLSEGREPRASLRVQVRP 101
P + ++GA+ P +G+ PP A E+ R A G G L R + P
Sbjct: 439 PGSKGDTGAKGEPGP--VGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Query: 102 GLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFP 161
G D GV P+ R S PGP GP RP A +PG A+ TG P
Sbjct: 497 GAD----GVAGPKGPAGERGS--PGPAGP--KGSPGEAGRPGEAGLPG----AKGLTGSP 544
Query: 162 FFPGPDPRPRTRPPAHA 178
PGPD +T PP A
Sbjct: 545 GSPGPD--GKTGPPGPA 559
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 116 PSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPP 175
P P PGP G A P +PG R G G FPG D + P
Sbjct: 451 PGPVGVQGPPGPAGE--EGKRGARGEPGPTGLPGPPGE-RGGPGSRGFPGADGVAGPKGP 507
Query: 176 AHARGAHAHRG-----GSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPA 222
A RG+ G G A + P G P+ + P PA
Sbjct: 508 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPA 559
Score = 30.0 bits (66), Expect = 2.1
Identities = 51/187 (27%), Positives = 59/187 (31%), Gaps = 31/187 (16%)
Query: 43 PAAVLNSGARVWPS-ASALGLTAPPKDAEDRARP-------ASGLRGARVLSEGREPRAS 94
P A GA+ P A A G PP A P A G +GAR P A+
Sbjct: 817 PGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR--GSAGPPGAT 874
Query: 95 LRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARA 154
G AA V PP S + GP GP PA P G P R
Sbjct: 875 -------GFPGAAGRV------GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921
Query: 155 RAGTGFPFFPGPDPRPRTRPPAHARGAHAHRG--------GSAWKRSPTSSPSCSEGNGE 206
G P G P PA A G +G G +R P +GE
Sbjct: 922 VGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 207 SAGNDPN 213
P+
Sbjct: 982 PGKQGPS 988
Score = 29.6 bits (65), Expect = 2.8
Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 13/154 (8%)
Query: 71 DRARPAS----GLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHP- 125
+R RP + G RG + P PG A G + P PR S P
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP-GAVGAKGEAGPQGPRGSEGPQ 367
Query: 126 GPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHR 185
G RG P A A P G + A+ G P G P R P+ +G
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP---- 423
Query: 186 GGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPL 219
GG + + P G++ +P P+
Sbjct: 424 GGPPGPKGNSGEPGAPGSKGDTGAKG---EPGPV 454
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 40.4 bits (93), Expect = 0.002
Identities = 57/207 (27%), Positives = 75/207 (36%), Gaps = 18/207 (8%)
Query: 41 ALPAAVLNSGARVWPSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVR 100
A PAA + P +A G P+ E + A+ R A + + P S +V
Sbjct: 24 APPAAATPFKVSLQPPGAA-GAAPEPETGECQPAAAAEHREAAAVPAAKMPAFSSCFEVV 82
Query: 101 PGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGF 160
G AAP + + PP +S P P P + + R GA+ R
Sbjct: 83 SG--AAAP---ASAAAGPPGASCKP-PLPPHYTSTAQITVRALGAD----RLLLHGPDPV 132
Query: 161 PFFPGPDPRPRTR----PPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESA---GNDPN 213
P G PR R PA A RG SAW P C E G A G D N
Sbjct: 133 PGAAGSAAAPRGRCLLLAPAPAAPVPPRRGSSAWLLEELLRPDCPEPAGLDATREGPDRN 192
Query: 214 CQPAPLQPALALLKTSSSHQSLASPYP 240
+ + + ALA K + SP P
Sbjct: 193 FRLSEHRQALAAAKHRGPAATPGSPDP 219
Score = 33.9 bits (76), Expect = 0.15
Identities = 51/178 (28%), Positives = 62/178 (34%), Gaps = 34/178 (19%)
Query: 37 RERSALPAAVLN---------SGARVWPSASALGLTA-------PPKDAEDRARPASGLR 80
RE +A+PAA + SGA P+++A G PP L
Sbjct: 62 REAAAVPAAKMPAFSSCFEVVSGAAA-PASAAAGPPGASCKPPLPPHYTSTAQITVRALG 120
Query: 81 GARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALA 140
R+L G +P V G A G C L P+P +A PR LL L
Sbjct: 121 ADRLLLHGPDP-----VPGAAGSAAAPRGRCLLLAPAP---AAPVPPRRGSSAWLLEELL 172
Query: 141 RPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP 198
RP E G A GPD R A A HRG +A SP P
Sbjct: 173 RPDCPEPAGLDATRE---------GPDRNFRLSEHRQALAAAKHRGPAATPGSPDPGP 221
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 40.4 bits (93), Expect = 0.002
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 20/141 (14%)
Query: 16 VTIGSLNATKVHLE---MRRKFGVRERSALPAAVLNSGARVWPSASALGLTAPPKDAEDR 72
VT ++ T H M RKF + + LPAAV+ S T+ P +
Sbjct: 633 VTTDAMPRTNFHSSVAFMFRKFKILRPAPLPAAVVPSTP-----------TSAPAPTQPA 681
Query: 73 ARPASGLRGARVLSEGREPRA----SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPR 128
P SG G R+L++ +P + SL + P + VA+P P+P R+ A R
Sbjct: 682 PTPTSGPIGLRILAQ--QPLSVTCFSLALPSPPAVAVASPAPAPAPSPAPARAQAPASAR 739
Query: 129 GPLFPALLAALARPHGAEVPG 149
P A P PG
Sbjct: 740 DPAPAPAPVAGPAPASTSAPG 760
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 20/166 (12%)
Query: 105 VAAPGVCSLSCPSPPRSSAH-PGPRGPLFPALLAALARPHG-AEVPGRRARARAGTGFPF 162
+A+ + S + P+P + A P P PAL +A + +EVP R A + P
Sbjct: 494 LASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPE 553
Query: 163 FPGP--DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSP----SCSEGNGESAGN------ 210
P D RT+ PA AR S + SP + P S S G ++
Sbjct: 554 TAAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSS 613
Query: 211 ------DPNCQPAPLQPALALLKTSSSHQSLASPYPESPAQFNISS 250
P P P QPA + S + S ASP P SP+ ++S+
Sbjct: 614 LRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGPASPSPVSLSN 659
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/199 (28%), Positives = 71/199 (35%), Gaps = 42/199 (21%)
Query: 52 RVWPSASALGLTAPPKDAED---RARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAP 108
RV A+A T P + E R+ P+S RG R R R + R +AP
Sbjct: 344 RVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAP 403
Query: 109 GVCSLSCPSPP------------RSSAHPGP-RGPLFPALLAALARPHGAEVPGRRARAR 155
P P RSS+ G RG P R HG G+RA+ R
Sbjct: 404 RRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGH--GKRAKER 461
Query: 156 AGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSAWK---RSP---------TSSPSCSEG 203
P P P GAH RGG K RSP + SPS S
Sbjct: 462 PPRARPASTSPSP-----------GAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRS 510
Query: 204 -NGESAGNDPNCQPAPLQP 221
+ E + P+ P+P +P
Sbjct: 511 RSAEKRPHSPSRSPSPKKP 529
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 39.7 bits (91), Expect = 0.003
Identities = 36/107 (33%), Positives = 39/107 (36%), Gaps = 24/107 (22%)
Query: 89 REPRASLRVQVRPGLDVAAPGVCSLSCPSPP---RSSAHPGPRGPLFPALLAALARPHGA 145
R P + V L P S S SPP RS + PGP P P A P G
Sbjct: 999 RRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRA---PWGP 1055
Query: 146 EVPGRRARARAGTGFPFFPGP--DPRP----RTRPPAHARGAHAHRG 186
P R PGP P P R PPA+ RG HRG
Sbjct: 1056 RTPHR------------VPGPWGPPEPLLLYRAAPPAYGRGGELHRG 1090
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 39.3 bits (90), Expect = 0.004
Identities = 39/130 (30%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 112 SLSCPSPPRSSAHPGPRGPLFPA-----LLAALARPHG---AEVPGRRARARAGTGFPFF 163
+LS P P + S P GP + +LAA P G A P R AR + P
Sbjct: 221 TLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRK 280
Query: 164 PGPDPRPRTRPPAHARGAHAHRGGSA-----WKRSPT-------SSPSCSEGNGESAGND 211
P P P P A R A WK P S+PS S G + A
Sbjct: 281 PSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPA 340
Query: 212 PNCQPAPLQP 221
P+ P P +P
Sbjct: 341 PSVSPGPWKP 350
>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
Length = 360
Score = 39.3 bits (90), Expect = 0.004
Identities = 36/105 (34%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 80 RGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLF------P 133
RGAR G R P LDV++ L PR P P P F
Sbjct: 6 RGARSAGAGSPARPP-----SPRLDVSSDSFDPLLALYAPRLPPIPYPNAPCFNNVAEYE 60
Query: 134 ALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHA 178
+ L R G GR A AG+G P PGP R R RP A A
Sbjct: 61 SFLRTGVRG-GGRGRGRARGAAAGSGVPAAPGPSGRTRRRPDAPA 104
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 39.3 bits (90), Expect = 0.004
Identities = 42/138 (30%), Positives = 51/138 (36%), Gaps = 19/138 (13%)
Query: 88 GREP-RASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHG-- 144
GR P RAS R + P +C P S+A PG A + A RPHG
Sbjct: 52 GRRPNRASGRRRRSCSPAPTWPPLCCYPQSRPTASAAGPG-------ACMRASGRPHGNT 104
Query: 145 --AEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHR------GGSAWKRSPTS 196
+ P R R R G P P P PP +R R G +R+
Sbjct: 105 TASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRGRRAGAC 164
Query: 197 SPSCSEGNGESAGNDPNC 214
PSC+ G SA P C
Sbjct: 165 KPSCA-GAAWSARGAPLC 181
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 38.9 bits (89), Expect = 0.005
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 14/193 (7%)
Query: 70 EDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRG 129
+DR GL RV R R + ++ P D+ P V SL+ +P SS P R
Sbjct: 94 QDRESAGEGLGPRRVKPSPR--RETFVLKDSPVRDLL-PTVNSLTRSTPSPSSLTPRLRS 150
Query: 130 PLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPRPRTRPPAHARGAHAHRGGSA 189
+ AL G + + FP P P TR RG G +A
Sbjct: 151 NDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA 210
Query: 190 WKRSPTSSPSCSEGNGESAG-------NDPNCQPAPLQPALALLKTSSSHQSLASPYPES 242
++ G+GE G P P P++ LA ++S+ Q L P P+
Sbjct: 211 ASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRL--PRPQG 268
Query: 243 PAQFNISSENLPV 255
A SS LP+
Sbjct: 269 AAA--KSSSQLPI 279
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 38.9 bits (89), Expect = 0.005
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 116 PSPPRSSAHPGPRGPLFPALLAALARPHGAEV-------PGRRARARAGTGFPFFPGPDP 168
P P H GP GP+ P LL P G + P R R G G PGP P
Sbjct: 647 PGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPG----PGPGP 702
Query: 169 RPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAP 218
R R RGG+ + P P G S G PN + P
Sbjct: 703 YHRGR---------GGRGGN--EPPPPPPPFRGARGGRSGGGPPNGRGGP 741
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 38.9 bits (89), Expect = 0.005
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 107 APGVCSLSCPSPPRSSAHPGPRG-----PLFPALL-------AALARPHGAEVPGRRARA 154
AP +++ PSP + A P P+G P+ P+ L A++ GA VP
Sbjct: 1613 APTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVP------ 1666
Query: 155 RAGTGFPFFPGPD--------PRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGE 206
+A G P GP P P + P A +G K S TS P C + + +
Sbjct: 1667 QASKGLPAKKGPTALKEVLVAPAPESTP---IITAPTRKGPQTKKSSATSPPICPDPSAK 1723
Query: 207 SAGNDP--NCQPAPLQP 221
+ P PAPL P
Sbjct: 1724 NGSKGPLSTVAPAPLLP 1740
Score = 32.3 bits (72), Expect = 0.43
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 14/143 (9%)
Query: 107 APGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGP 166
AP + + PSP A P P+G P + G P + P P P
Sbjct: 1079 APTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATP--PSP 1136
Query: 167 -----DPRPRTRPPAHARGAHAHRGGSAW---KRSPTSSPSCSEGNGESAGNDPNCQPAP 218
P P+ P A + +GG A K +PT +P+ + + + P+ + AP
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPT-TPAATPPSPKGGLATPSPKGAP 1195
Query: 219 LQPALALLKTSSSHQSLASPYPE 241
PA S LA+P P+
Sbjct: 1196 TTPAAT---PPSPKGGLATPSPK 1215
Score = 30.0 bits (66), Expect = 2.1
Identities = 32/119 (26%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 107 APGVCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGP 166
AP + + PSP A P P+G P + G P + P P P
Sbjct: 1240 APTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP--PSP 1297
Query: 167 DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNG---ESAGNDPNCQPAPLQPA 222
P T PP A A A SP SP G A P+ + P PA
Sbjct: 1298 KGGPATSPPKGAPTPPA-----ATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPA 1351
Score = 30.0 bits (66), Expect = 2.1
Identities = 36/149 (24%), Positives = 54/149 (36%), Gaps = 11/149 (7%)
Query: 101 PGLDVAAPGVCSLSCPSPPRSSAHPGPRG-PLFPALLAALARPHGAEVPGRRARARAGTG 159
P + G +++ PSP R A P P+G P PA++ + A R A G
Sbjct: 1372 PAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKG 1431
Query: 160 FPFFPGPDP-----RPRTRPPAHARGAHAHRGG----SAWKRSPTSSPSCSEGNGESAGN 210
P P P T P + +G + SP P+ + S+
Sbjct: 1432 DLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPK 1491
Query: 211 DPNCQPAPL-QPALALLKTSSSHQSLASP 238
PAP+ P L + SS + A+P
Sbjct: 1492 KAPATPAPMGAPTLPAVIPSSPKEVPATP 1520
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/176 (30%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 55 PSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLS 114
PS G A P ++ + P+ + A + G PR PGL A +L+
Sbjct: 686 PSPPPPGSEAAPSPSKRKRTPSD--KSAHTVEHG-SPRTRDPTPRPPGLPEEAT---ALA 739
Query: 115 CPSPPRSSAHPGPRGPL-------FPALLAALARPHGAEVPGR-RARARAGTGFPFFPGP 166
PSPPR+ A PR PL PA A A A+V G+ R+ RA
Sbjct: 740 APSPPRARARAAPR-PLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVA---LGAQ 795
Query: 167 DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNG-ESAGNDPNCQPAPLQP 221
PR + PP A+ S SP +P +E G E A D PAP P
Sbjct: 796 GPREKPAPPQKAK-------RSVPPASPARAPPATETPGPEKAATD---LPAPETP 841
Score = 33.5 bits (75), Expect = 0.19
Identities = 50/191 (26%), Positives = 68/191 (35%), Gaps = 31/191 (16%)
Query: 55 PSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASL-----RVQVRPGLDVAAPG 109
P+ S + LT P E PAS R S P +L R + RP G
Sbjct: 588 PAPSPVPLTTPASAEEAIPLPASS-DSERSASSVEGPGGALYARVARREARPARARGEIG 646
Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPR 169
SLS PSP R P P P +P + + G+ + A AG P P P
Sbjct: 647 GLSLS-PSPERRK--PPPPDPA--------TKPKVSWIHGKHSAAAAGRA----PSPPPP 691
Query: 170 PRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTS 229
G+ A S KR+P+ + + +G DP +P L L
Sbjct: 692 ----------GSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAP 741
Query: 230 SSHQSLASPYP 240
S ++ A P
Sbjct: 742 SPPRARARAAP 752
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/176 (30%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 55 PSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASLRVQVRPGLDVAAPGVCSLS 114
PS G A P ++ + P+ + A + G PR PGL A +L+
Sbjct: 681 PSPPPPGSEAAPSPSKRKRTPSD--KSAHTVEHG-SPRTRDPTPRPPGLPEEAT---ALA 734
Query: 115 CPSPPRSSAHPGPRGPL-------FPALLAALARPHGAEVPGR-RARARAGTGFPFFPGP 166
PSPPR+ A PR PL PA A A A+V G+ R+ RA
Sbjct: 735 APSPPRARARAAPR-PLGAHGRRRSPAKRAEAASMLAADVRGKTRSLGRAEVA---LGAQ 790
Query: 167 DPRPRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNG-ESAGNDPNCQPAPLQP 221
PR + PP A+ S SP +P +E G E A D PAP P
Sbjct: 791 GPREKPAPPQKAK-------RSVPPASPARAPPATETPGPEKAATD---LPAPETP 836
Score = 33.5 bits (75), Expect = 0.19
Identities = 50/191 (26%), Positives = 68/191 (35%), Gaps = 31/191 (16%)
Query: 55 PSASALGLTAPPKDAEDRARPASGLRGARVLSEGREPRASL-----RVQVRPGLDVAAPG 109
P+ S + LT P E PAS R S P +L R + RP G
Sbjct: 583 PAPSPVPLTTPASAEEAIPLPASS-DSERSASSVEGPGGALYARVARREARPARARGEIG 641
Query: 110 VCSLSCPSPPRSSAHPGPRGPLFPALLAALARPHGAEVPGRRARARAGTGFPFFPGPDPR 169
SLS PSP R P P P +P + + G+ + A AG P P P
Sbjct: 642 GLSLS-PSPERRK--PPPPDPA--------TKPKVSWIHGKHSAAAAGRA----PSPPPP 686
Query: 170 PRTRPPAHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKTS 229
G+ A S KR+P+ + + +G DP +P L L
Sbjct: 687 ----------GSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPEEATALAAP 736
Query: 230 SSHQSLASPYP 240
S ++ A P
Sbjct: 737 SPPRARARAAP 747
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 38.1 bits (87), Expect = 0.008
Identities = 67/233 (28%), Positives = 88/233 (37%), Gaps = 44/233 (18%)
Query: 25 KVHLEMRRKFGVRERSA------LPAAVLNSGARVWPSASALGLTAPPKDAEDRARPASG 78
K LE R+ +R+ SA PA L + S A G ++P D+E P
Sbjct: 205 KKSLERRKNPLLRKESAPPSLRRRPAETLGDSSPSSSSTPASGCSSP-NDSEHGPNP--- 260
Query: 79 LRGARVLSEGREPRASLRVQVRPGLDVAAPGVC-----SLSCPSPPRSSA----HP--GP 127
+ G+ L R LR+Q A P V +L P+P R+ + HP GP
Sbjct: 261 ILGSEALLGQR-----LRLQETSVAPFALPTVSLLPAITLGLPAPARADSDRRTHPTLGP 315
Query: 128 RGPLFPALLAALARPHGAE------VPGRRARA----RAGTGFPFF--PGPDPRPRTRPP 175
RGP+ + L PHG E +P R +G+ P PG P P
Sbjct: 316 RGPILGSPHTPLFLPHGLEPEAGGTLPSRLQPILLLDPSGSHAPLLTVPGLGPLPFHFAQ 375
Query: 176 AHARGAHAHRGGSAWKRSPTSSPSCSEGNGESAGNDPNCQPAPLQPALALLKT 228
+ G W S T SE SA P P P+QP L LKT
Sbjct: 376 SLMTTERLSGSGLHWPLSRTR----SEPLPPSATAPP--PPGPMQPRLEQLKT 422
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,724,205
Number of Sequences: 37866
Number of extensions: 886240
Number of successful extensions: 5302
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 667
Number of HSP's that attempted gapping in prelim test: 4379
Number of HSP's gapped (non-prelim): 1456
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.