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Search of human proteins with 239753324
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 520 e-148
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 518 e-147
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 458 e-129
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 450 e-127
gi|169177385 PREDICTED: hypothetical protein [Homo sapiens] 150 1e-36
gi|169177307 PREDICTED: hypothetical protein [Homo sapiens] 150 1e-36
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 48 9e-06
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 48 9e-06
gi|54860079 nadrin isoform 1 [Homo sapiens] 47 1e-05
gi|54860105 nadrin isoform 2 [Homo sapiens] 47 1e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 46 3e-05
gi|118402590 myosin XV [Homo sapiens] 45 4e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 45 4e-05
gi|41281612 zinc finger protein 828 [Homo sapiens] 45 6e-05
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 45 7e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 44 1e-04
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 44 1e-04
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 1e-04
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 1e-04
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 44 1e-04
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 44 1e-04
gi|55750053 atrophin-1 [Homo sapiens] 44 1e-04
gi|55750041 atrophin-1 [Homo sapiens] 44 1e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 44 2e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 43 2e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 43 2e-04
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 43 2e-04
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 43 2e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 43 2e-04
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 520 bits (1338), Expect = e-148
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR 60
MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR
Sbjct: 1 MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR 60
Query: 61 HPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTG 120
HPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTG
Sbjct: 61 HPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTG 120
Query: 121 ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA 180
ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA
Sbjct: 121 ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA 180
Query: 181 PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV 240
PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV
Sbjct: 181 PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV 240
Query: 241 AVEDP 245
AVEDP
Sbjct: 241 AVEDP 245
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 518 bits (1335), Expect = e-147
Identities = 244/245 (99%), Positives = 245/245 (100%)
Query: 1 MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR 60
MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR
Sbjct: 1 MVLIEDARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRR 60
Query: 61 HPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTG 120
HPDHAPPPGRPSCSRPLCAGSSCLATPEPAR+PSIAEPGPGIPVAAIKPVILPGGGGCTG
Sbjct: 61 HPDHAPPPGRPSCSRPLCAGSSCLATPEPARAPSIAEPGPGIPVAAIKPVILPGGGGCTG 120
Query: 121 ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA 180
ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA
Sbjct: 121 ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWA 180
Query: 181 PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV 240
PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV
Sbjct: 181 PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPV 240
Query: 241 AVEDP 245
AVEDP
Sbjct: 241 AVEDP 245
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 458 bits (1178), Expect = e-129
Identities = 213/217 (98%), Positives = 215/217 (99%)
Query: 29 ARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPE 88
+ GAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPE
Sbjct: 2 SNGGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPE 61
Query: 89 PARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRW 148
PAR+PSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRW
Sbjct: 62 PARAPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRW 121
Query: 149 RSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGT 208
RSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGT
Sbjct: 122 RSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGT 181
Query: 209 RARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVEDP 245
RARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVEDP
Sbjct: 182 RARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVEDP 218
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 450 bits (1157), Expect = e-127
Identities = 210/220 (95%), Positives = 213/220 (96%)
Query: 26 QPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLA 85
+PSA AGAGAGR PAARQVAPPGGP SLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLA
Sbjct: 6 RPSAGAGAGAGRRPAARQVAPPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLA 65
Query: 86 TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQIS 145
TPEPAR+PSIAEPGPGIPVAA KP +LPGGGGCTGARTENPPLSPTRGDCRVPVPAA IS
Sbjct: 66 TPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCRVPVPAAPIS 125
Query: 146 LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 205
LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH
Sbjct: 126 LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 185
Query: 206 LGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVEDP 245
LGTRARCPCGCGEARRSALQQLHGGGNRPSAPS VAVEDP
Sbjct: 186 LGTRARCPCGCGEARRSALQQLHGGGNRPSAPSRVAVEDP 225
Score = 32.3 bits (72), Expect = 0.39
Identities = 53/187 (28%), Positives = 65/187 (34%), Gaps = 24/187 (12%)
Query: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATP 87
S R +G P Q G P + H + P AP PS R G+S A P
Sbjct: 125 SLRWRSGREARPGGPQAGRAGDPKADQAMHLQ--PAWAPKLQPPSVCRQQPPGNS-RARP 181
Query: 88 EPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLR 147
+ A G A + GGG N P +P+R P S R
Sbjct: 182 HSPHLGTRARCPCGCGEARRSALQQLHGGG-------NRPSAPSRVAVEDPWLEVSSSGR 234
Query: 148 WRSGREARPGGPQAGRAGDPKADQAM--HLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 205
GR G QA DP+A QAM HL + Q PGN +A +
Sbjct: 235 GGPGRGQGLAGSQARGTRDPEAAQAMLHHLG------------AQLQAPGNFQAGWRAQP 282
Query: 206 LGTRARC 212
T ARC
Sbjct: 283 RRTGARC 289
>gi|169177385 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 150 bits (379), Expect = 1e-36
Identities = 67/73 (91%), Positives = 68/73 (93%)
Query: 173 MHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGN 232
MHLQPAWAPKLQPPSVCRQQPPGNSR RPH PHLGTRARCPCGCG+ARRSALQQLHGGGN
Sbjct: 1 MHLQPAWAPKLQPPSVCRQQPPGNSRVRPHFPHLGTRARCPCGCGQARRSALQQLHGGGN 60
Query: 233 RPSAPSPVAVEDP 245
RPSA SPVA E P
Sbjct: 61 RPSALSPVAAEGP 73
Score = 47.0 bits (110), Expect = 2e-05
Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 85 ATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPP----------LSPTRGD 134
ATP+ A +PS+A+PG + VAA KP L GGGCTGA T+ P +PT
Sbjct: 120 ATPKLAGAPSLADPGLDVAVAAAKPGGLL-GGGCTGAGTDPQPHPRWLRTAPGAAPTSLR 178
Query: 135 CRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHL 175
R V R G A G G+P + Q + L
Sbjct: 179 RRRGVGVTARQALRREGMRACDSGTYRASPGEPGSQQLLFL 219
>gi|169177307 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 150 bits (379), Expect = 1e-36
Identities = 67/73 (91%), Positives = 68/73 (93%)
Query: 173 MHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGN 232
MHLQPAWAPKLQPPSVCRQQPPGNSR RPH PHLGTRARCPCGCG+ARRSALQQLHGGGN
Sbjct: 1 MHLQPAWAPKLQPPSVCRQQPPGNSRVRPHFPHLGTRARCPCGCGQARRSALQQLHGGGN 60
Query: 233 RPSAPSPVAVEDP 245
RPSA SPVA E P
Sbjct: 61 RPSALSPVAAEGP 73
Score = 45.8 bits (107), Expect = 3e-05
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 85 ATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQI 144
ATP+ A +PS+A+PG + VAA KP L GGGCTGA T+ P R AA
Sbjct: 120 ATPKLAGAPSLADPGMDVAVAAAKPGGLL-GGGCTGAGTDPQPHPRW---LRTAPGAAPT 175
Query: 145 SLRWRSG 151
SLR R G
Sbjct: 176 SLRRRRG 182
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 47.8 bits (112), Expect = 9e-06
Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 86 TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142
+P+P+ S S + G G PVA + PG G+ PP P GD + P P+A
Sbjct: 80 SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
Query: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
Q+ L GR G GRAG+ +A A P+ AP+ P C
Sbjct: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
Query: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219
PG RA PH P H G CP CG A
Sbjct: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 47.8 bits (112), Expect = 9e-06
Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 39/154 (25%)
Query: 86 TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAA--- 142
+P+P+ S S + G G PVA + PG G+ PP P GD + P P+A
Sbjct: 80 SPQPSSSGSSSSRGGGAPVARPE----PGRAASPGSMVPGPPAPPPSGD-QQPAPSAGSG 134
Query: 143 ------------QISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
Q+ L GR G GRAG+ +A A P+ AP+ P C
Sbjct: 135 STADLPEWPWPLQLLLLLAPGR-----GCARGRAGEGRAQCAG--SPSTAPR---PRTC- 183
Query: 191 QQPPGNSRARPHSP-----HLGTRARCPCGCGEA 219
PG RA PH P H G CP CG A
Sbjct: 184 -SSPG--RATPHRPAGQPSHPGGAGCCPRVCGPA 214
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 47.4 bits (111), Expect = 1e-05
Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 28/233 (12%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT 86
P ++ +G + P + PP S H+ + PPG+PS L A ++
Sbjct: 651 PGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQ------PPGQPSAPSQLSAPRRYSSS 704
Query: 87 PEPARSPSIAEPGPGIPVAAI-----------KPVILPGGGGC-----TGARTENPPLSP 130
P ++P+ P P + P+ LP G T +T PP +P
Sbjct: 705 LSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTP 764
Query: 131 TRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
G +PA Q +G P AG P+ +P+ P QPP V
Sbjct: 765 PLGKQNPSLPAPQT----LAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPPQPPGVHS 820
Query: 191 QQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVE 243
+ P + + T + E RS ++H P + ++
Sbjct: 821 AGDSSLTNTAPTASKIVTDSN--SRVSEPHRSIFPEMHSDSASKDVPGRILLD 871
Score = 40.8 bits (94), Expect = 0.001
Identities = 58/233 (24%), Positives = 78/233 (33%), Gaps = 43/233 (18%)
Query: 29 ARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHA--PPPGRPSC------SRPLCAG 80
A + +G G P++ + G + P A P PGR + ++P A
Sbjct: 549 AESSSGGGTVPSSAGILEQGPSPGDGSPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAA 608
Query: 81 SS---CLATPEPARSPS-------IAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP 130
S + P A PS + +P P P P PGG +G P LSP
Sbjct: 609 GSHQLSMGQPHNAAGPSPHTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSP 668
Query: 131 TRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
+ R P P Q +G+ PG P A + L P AP PP
Sbjct: 669 -KPPTRSPSPPTQ-----HTGQP--PGQPSAPSQLSAPRRYSSSLSPIQAPNHPPP---- 716
Query: 191 QQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHG----GGNRPSAPSP 239
QPP + H+ P G AL HG P P+P
Sbjct: 717 -QPPTQATPLMHTK--------PNSQGPPNPMALPSEHGLEQPSHTPPQTPTP 760
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 47.4 bits (111), Expect = 1e-05
Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 28/233 (12%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT 86
P ++ +G + P + PP S H+ + PPG+PS L A ++
Sbjct: 573 PGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHTGQ------PPGQPSAPSQLSAPRRYSSS 626
Query: 87 PEPARSPSIAEPGPGIPVAAI-----------KPVILPGGGGC-----TGARTENPPLSP 130
P ++P+ P P + P+ LP G T +T PP +P
Sbjct: 627 LSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMALPSEHGLEQPSHTPPQTPTPPSTP 686
Query: 131 TRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCR 190
G +PA Q +G P AG P+ +P+ P QPP V
Sbjct: 687 PLGKQNPSLPAPQT----LAGGNPETAQPHAGTLPRPRPVPKPRNRPSVPPPPQPPGVHS 742
Query: 191 QQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVE 243
+ P + + T + E RS ++H P + ++
Sbjct: 743 AGDSSLTNTAPTASKIVTDSN--SRVSEPHRSIFPEMHSDSASKDVPGRILLD 793
Score = 39.7 bits (91), Expect = 0.002
Identities = 55/208 (26%), Positives = 72/208 (34%), Gaps = 32/208 (15%)
Query: 37 RSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPL-CAGSSCLATPEPARSPSI 95
+ P + V PG +S + + P A + S +P AG S + P+
Sbjct: 502 KDPVSAAVPAPGRNNSQIAS-GQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRRAVKKPAP 560
Query: 96 AEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGREAR 155
A P PG P P PGG +G P LSP + R P P Q +G+
Sbjct: 561 APPKPGNP-----PPGHPGGQSSSGTSQHPPSLSP-KPPTRSPSPPTQ-----HTGQP-- 607
Query: 156 PGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCG 215
PG P A + L P AP PP QPP + H+ P
Sbjct: 608 PGQPSAPSQLSAPRRYSSSLSPIQAPNHPPP-----QPPTQATPLMHTK--------PNS 654
Query: 216 CGEARRSALQQLHG----GGNRPSAPSP 239
G AL HG P P+P
Sbjct: 655 QGPPNPMALPSEHGLEQPSHTPPQTPTP 682
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 46.2 bits (108), Expect = 3e-05
Identities = 62/238 (26%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 31 AGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSC----SRPLCAGSSCLAT 86
A G R + RQ P PS R P G P+ SR + A
Sbjct: 275 ADGGPRRQNSVRQRPPDASPSP-GSARPAREPSLERVGGHPTSPAALSRAWASSWESEAA 333
Query: 87 PEPARSPSIAEPGPGIPVAA--IKPVILPGGGGCT------GARTENPPLSPTRGDCRVP 138
PEPA P+ P P P +K +PG T AR + PPL+ R + P
Sbjct: 334 PEPAAPPAAPSP-PDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSP 392
Query: 139 VPAAQISLRWRSGREA----RPGGPQAGRAGDPKADQAMHLQPAWAPKLQP--PSVCRQQ 192
P + R GR A R G P+A +A +++ ++ + + P P P+ R++
Sbjct: 393 -PRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREE 451
Query: 193 PPGNSRARPHSPHLGTRARCPC-------------GCGEARRSALQQLHGGGNRPSAP 237
P R +P L +A C G R+ ++ G G PSAP
Sbjct: 452 PRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSPSAP 509
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 45.4 bits (106), Expect = 4e-05
Identities = 74/281 (26%), Positives = 96/281 (34%), Gaps = 55/281 (19%)
Query: 7 ARGRKRVVPWRRMVLNFVFQPSARAGAGAGRSPAARQVA---------PPGGPSSLARTH 57
AR K+ + ++ + ARAG A R A ++ PG P L R
Sbjct: 573 ARFLKKTLSEKKPIARLRGSQKARAGGPAVREAAYKRFGYKLAGMDPEKPGTPIVLRRAQ 632
Query: 58 SRRHP--DHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVI--LP 113
R D PP R L S+ L+ P P R PS P P + P + LP
Sbjct: 633 PRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPP----PAPPLSPALSGLP 688
Query: 114 GGGGCTGARTENPPLSPTRGDCRVPVPAAQIS------------------LRWRSGREAR 155
G+ +PP P VP PA Q S L + R +
Sbjct: 689 RPASPYGSLRRHPP--PWAAPAHVP-PAPQASWWAFVEPPAVSPEVPPDLLAFPGPRPSF 745
Query: 156 PGGPQAGRA-GDPKADQAMHLQPAWAPKLQPPSVCRQQPPGN--SRARPHSPHLGTR--- 209
G + G A G P A + AW+P P R P S P SP L R
Sbjct: 746 RGSRRRGAAFGFPGASPRASRRRAWSPLASPQPSLRSSPGLGYCSPLAPPSPQLSLRTGP 805
Query: 210 --------ARCPCGCGEA---RRSALQQLHGGGNRPSAPSP 239
AR P E+ RR+A + G P +P P
Sbjct: 806 FQPPFLPPARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRP 846
Score = 30.8 bits (68), Expect = 1.1
Identities = 50/182 (27%), Positives = 62/182 (34%), Gaps = 34/182 (18%)
Query: 25 FQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCL 84
F P AR SPA R+ A GP S R P +PP G LC
Sbjct: 810 FLPPARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRPP--SPPLG-------LCHSPRRS 860
Query: 85 ATPEPARSP----SIAEPGPGIPVAAIKPVI-----LPGGGGCTGARTEN--PPLSPTRG 133
+ P+R P ++EP P A+KP + P G A E+ P P
Sbjct: 861 SLNLPSRLPHTWRRLSEP----PTRAVKPQVRLPFHRPPRAGAWRAPLEHRESPREPEDS 916
Query: 134 DCRVPVPAAQISLRWRSGREARPGGPQAGRAGD----------PKADQAMHLQPAWAPKL 183
+ VP S RP P G AG P+ L P +P L
Sbjct: 917 ETPWTVPPLAPSWDVDMPPTQRPPSPWPGGAGSRRGFSRPPPVPENPFLQLLGPVPSPTL 976
Query: 184 QP 185
QP
Sbjct: 977 QP 978
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 45.4 bits (106), Expect = 4e-05
Identities = 57/222 (25%), Positives = 74/222 (33%), Gaps = 14/222 (6%)
Query: 34 GAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPP--GRPSCSRPLCAGSSCLATPEPAR 91
GA +PAA +P GGP++ + + P PP G P+ P A ATP +
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPK 1114
Query: 92 SPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSG 151
P G P P G G T P +PT P P ++ G
Sbjct: 1115 GGLATPPHKGAPTTPAATPPSPKG----GLATPPPKGAPTTPAATPPSPKGGLATPPPKG 1170
Query: 152 R----EARPGGPQAGRA-GDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHL 206
A P P+ G A PK +PK + + P A P SP
Sbjct: 1171 APTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1230
Query: 207 GTRARCPCGCGEARRSALQQLHGGGNRP---SAPSPVAVEDP 245
G P G + GG P AP+P A P
Sbjct: 1231 GLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPP 1272
Score = 43.9 bits (102), Expect = 1e-04
Identities = 60/223 (26%), Positives = 78/223 (34%), Gaps = 25/223 (11%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT 86
P+ + GA PAA +P GG ++ P H P P+ + P G LAT
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLAT---------PPHKGAPTTPAATPPSPKGG--LAT 1142
Query: 87 PEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISL 146
P P +P+ P P + P G T A T P SP +G P P
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGL-ATPPPKGAPTTPAAT---PPSP-KGGLATPSPKGA--- 1194
Query: 147 RWRSGREARPGGPQAGRA-GDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 205
+ A P P+ G A PK +PK + + P A P SP
Sbjct: 1195 --PTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPK 1252
Query: 206 LGTRARCPCGCGEARRSALQQLHGGGNRP---SAPSPVAVEDP 245
G P G + L GG P AP+P V P
Sbjct: 1253 GGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPP 1295
Score = 43.5 bits (101), Expect = 2e-04
Identities = 50/210 (23%), Positives = 71/210 (33%), Gaps = 30/210 (14%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPP--------------PGRPS 72
P++ + GA PAA +P GGP++ + + P PP P P+
Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990
Query: 73 CSRPLCAGSSCLATPEPARS-PSIAEPGP-GIPV-------AAIKPVILPGGGGCTGART 123
+ P G +P+ A + P++ P P G P A+ P P + A T
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAAT 1050
Query: 124 ENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKL 183
P +PT +P P + G P G P P AP
Sbjct: 1051 PLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATP-----SPKGAP-- 1103
Query: 184 QPPSVCRQQPPGNSRARPHSPHLGTRARCP 213
PP+ P G PH T A P
Sbjct: 1104 MPPAATPPSPKGGLATPPHKGAPTTPAATP 1133
Score = 38.5 bits (88), Expect = 0.005
Identities = 46/202 (22%), Positives = 62/202 (30%), Gaps = 32/202 (15%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGR---------------- 70
P+ GA PAA +P G P + + P PP +
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP 1360
Query: 71 ----------PSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTG 120
P + P G + P P R P+I P G P + + P T
Sbjct: 1361 TTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP-KGDPTSPAVIPLSPKKAPATP 1419
Query: 121 ARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQA-GRAGDPKADQAMHLQPAW 179
T +P++GD P +SL+ A GGP GDP P
Sbjct: 1420 V-TREGAATPSKGDL-TPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKE 1477
Query: 180 APKLQPPSVCRQQPPGNSRARP 201
P P V P + A P
Sbjct: 1478 PP--APKQVATSSSPKKAPATP 1497
Score = 37.7 bits (86), Expect = 0.009
Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 12/214 (5%)
Query: 34 GAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGS---SCLATPEPA 90
GA +PAA +P GGP++ + P PP + + P G+ + + P P
Sbjct: 1239 GAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK 1298
Query: 91 RSPSIAEP-GPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWR 149
P+ + P G P AA P P G T P +PT P P +L
Sbjct: 1299 GGPATSPPKGAPTPPAATPP--SPKG----SPGTPPPKGAPTPPAVTPPSPKGTPTL--P 1350
Query: 150 SGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTR 209
+ + GGP + + A P + PPS R + + P SP +
Sbjct: 1351 ATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPL 1410
Query: 210 ARCPCGCGEARRSALQQLHGGGNRPSAPSPVAVE 243
+ R G P A +PV+++
Sbjct: 1411 SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLK 1444
Score = 37.0 bits (84), Expect = 0.016
Identities = 59/246 (23%), Positives = 75/246 (30%), Gaps = 40/246 (16%)
Query: 27 PSARAGAGAGRSPAARQVAPPG---------GPSSLARTHSRRHPDHAPPPGRPSCSRPL 77
P+ + GA A ++P G PS + + P P P+ S
Sbjct: 856 PTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTS 915
Query: 78 CAGSSCLATPEPARSPSIAEP-GPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCR 136
+ ATP P P+ P G P AA P P G G T +P +PT
Sbjct: 916 SSPKKARATPAPKGIPASPSPKGAPTPPAATPP--SPKG----GPATPSPKWAPTPPAAT 969
Query: 137 VPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGN 196
P P + G P G P P AP PP+V P G+
Sbjct: 970 PPSPKGGPATPSPKGAPTPPAATPPSPKGGPATP-----SPKGAP--TPPAVTPPSPKGS 1022
Query: 197 SRARPHSPHLGT--------------RARCPCGCGEARRSALQQLHGGGNRPS---APSP 239
A P T P G + L GG PS AP+P
Sbjct: 1023 PAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP 1082
Query: 240 VAVEDP 245
A P
Sbjct: 1083 PAATPP 1088
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 45.1 bits (105), Expect = 6e-05
Identities = 58/212 (27%), Positives = 80/212 (37%), Gaps = 35/212 (16%)
Query: 33 AGAGRSPAARQVAPPGGPSSLARTHSRRHP-DHAPPPGRPSCS------RPLCAGSSCLA 85
A + SP P GPS A SR+ +P P +PS S +P A S
Sbjct: 242 ASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPR 301
Query: 86 TPEPARSPSIAEPGP--------GIPVAAIKP--VILPGGGGCTGARTENPPLSPTRGDC 135
P PA SP +PGP P A+ P P G P +SP G
Sbjct: 302 RPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSP--GPW 359
Query: 136 RVPVPAAQISLRWRSGR------EARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVC 189
+ P P+ S W+S ++ P P++ ++G P+ + AP L P
Sbjct: 360 K-PTPSVS-SASWKSSSVSPSSWKSPPASPESWKSGPPELRKT-------APTLSPEH-W 409
Query: 190 RQQPPGNSRARPHSPHLGTRARCPCGCGEARR 221
+ PP + R P L R P G E R+
Sbjct: 410 KAVPPVSPELRKPGPPLSPEIRSPAGSPELRK 441
Score = 29.3 bits (64), Expect = 3.3
Identities = 58/218 (26%), Positives = 75/218 (34%), Gaps = 51/218 (23%)
Query: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDH--APPPGRPSCSRPLCAGSSCLA 85
S+ + +SP A + GP L +T P+H A PP P L
Sbjct: 372 SSSVSPSSWKSPPASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPE-----------LR 420
Query: 86 TPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQIS 145
P P SP I P G P KP P + + + P S + P +Q S
Sbjct: 421 KPGPPLSPEIRSPA-GSPELR-KPSGSPDLWKLSPDQRKTSPAS-------LDFPESQKS 471
Query: 146 LR------WRSG----------REARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVC 189
R W+S E R GP +G + PKA W P L +
Sbjct: 472 SRGGSPDLWKSSFFIEPQKPVFPETRKPGP-SGPSESPKA-----ASDIWKPVLSIDTEP 525
Query: 190 RQQ---PPGNSRARPHSPHLGTRARCPCGCGEARRSAL 224
R+ P A P SP RA P E R+ AL
Sbjct: 526 RKPALFPEPAKTAPPASPEARKRALFP----EPRKHAL 559
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 44.7 bits (104), Expect = 7e-05
Identities = 53/184 (28%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 16 WRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSR 75
WR L +V +GA + R A +A G P RH PPP P+
Sbjct: 135 WRTGSLTYVAGDLGASGAVSARVRARASLAL-GLP-----IQCHRHISTEPPPPPPAA-- 186
Query: 76 PLCAGSSCLATPEPARSPSIA----EPGPGIPVAAIKPVILP----GGGGCTGARTENPP 127
P + P PAR+P IA + P +PV P LP GG TG +P
Sbjct: 187 PATGSAQSRPRPAPARAPLIAPGAHQSAPPLPVLGRLPAPLPLQLRAGGASTGLAAPSPG 246
Query: 128 LSPTRGDC--RVPVPAAQ-ISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQ 184
+ + R P P AQ R R+G E P GR G + P AP
Sbjct: 247 RGGKQSEISFRGPGPRAQHPGCRLRAGCE-----PSCGRLGRGYQQRLPSRSPHAAPAAP 301
Query: 185 PPSV 188
P++
Sbjct: 302 APAL 305
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 44.3 bits (103), Expect = 1e-04
Identities = 53/180 (29%), Positives = 64/180 (35%), Gaps = 32/180 (17%)
Query: 29 ARAGAGA-GRSPAARQVA--PPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLA 85
AR G G G SP A PP P + + P APPPG P + P +
Sbjct: 3 ARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG-PGPAPPQHPPRAEAL 61
Query: 86 TPEPA---------RSPSIAEPGPGIPVAAIKPVILPGGG------GCTGARTENPPLSP 130
PE A RS + PG P AA P G C+ A E P P
Sbjct: 62 PPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGP 121
Query: 131 T-----RGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQP 185
RG P P G G +AG AG+P+ QA +Q + LQP
Sbjct: 122 KVSFSCRGAASGPAPGP--------GPAEEAGSEEAGPAGEPRGSQASFMQRQFGALLQP 173
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/171 (27%), Positives = 56/171 (32%), Gaps = 22/171 (12%)
Query: 46 PPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT-PEPARSPSIAEPG----- 99
PP S++A P RP PL GS L P P +P+ A PG
Sbjct: 720 PPQVTSAIATLQQAAAMSFCPQVARPLVG-PLALGSPRLVRRPPPGPAPAAASPGPPPPA 778
Query: 100 --PGIPVAAIKPVILPGGGGCTGARTENP------------PLSPTRGDCRVPVPAAQIS 145
PG P + P P GG A P PLS ++ P S
Sbjct: 779 SPPGAPASPRAPRTSP-YGGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAAS 837
Query: 146 LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGN 196
R S R G A RA P D+ P A L P R + N
Sbjct: 838 TRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGGLDPQDSARSRLSSN 888
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/174 (31%), Positives = 64/174 (36%), Gaps = 16/174 (9%)
Query: 37 RSPAARQVAPPGGPSSLARTHSRRHPDHA-PPPGRPSCSRPLCAGSSCLATPEPARSPSI 95
RSP + V PPG P S+ R PD PPPG P S L S P P RSP
Sbjct: 53 RSPDS-VVPPPGSPDSVVLPP--RSPDSVVPPPGSPD-SVVLPPRSPDSVVP-PPRSPDS 107
Query: 96 AEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGREAR 155
P PG P + + P P ++ L P D VP PA R+G
Sbjct: 108 VVPPPGSPDSVVLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVP-PARSPDSGGRAGSPRS 166
Query: 156 PGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTR 209
P A RA P WA + + R P SR S L +R
Sbjct: 167 LAPPAAARAEG---------APGWAGRWGRVPLARSPPQVPSRPPSLSQPLSSR 211
Score = 31.6 bits (70), Expect = 0.66
Identities = 55/205 (26%), Positives = 71/205 (34%), Gaps = 30/205 (14%)
Query: 51 SSLARTHS----RRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAA 106
S+ THS R PD P R S L GS + P+RSP P PG P +
Sbjct: 10 STWPSTHSVVLPSRSPDSVVLPSRSPDSVVLPPGSPD-SVVLPSRSPDSVVPPPGSPDSV 68
Query: 107 IKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQA----G 162
+ P P ++ L P D VP P + S+ PG P +
Sbjct: 69 VLPPRSPDSVVPPPGSPDSVVLPPRSPDSVVPPPRSPDSV------VPPPGSPDSVVLPP 122
Query: 163 RAGD-----PKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCG 217
R+ D P + ++ L P + PP+ R G P S AR G
Sbjct: 123 RSPDSVVPPPGSPDSVVLPPRSPDSVVPPA--RSPDSGGRAGSPRSLAPPAAARAEGAPG 180
Query: 218 EARRSALQQLHGGGNRPSAPSPVAV 242
A R G P A SP V
Sbjct: 181 WAGR--------WGRVPLARSPPQV 197
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/227 (27%), Positives = 78/227 (34%), Gaps = 34/227 (14%)
Query: 32 GAGAGRSPAARQVAPPGGP---SSLA--RTHSRRHPDHAPPPGR---PSCSRPLCAGSSC 83
G G P APP GP SS+A T+ + APPPG P+ S P S
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 84 LATPEPAR------SPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRV 137
+ EP S +PG G+P A P+ PG G G + P +PTR
Sbjct: 443 QSV-EPVVMMHMNIQDSGTQPG-GVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIAR 500
Query: 138 PVPAAQISLRWRSGREARPGGPQA-----GRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 192
P P R + PGGP G A A + L P + Q
Sbjct: 501 PTPP--------QARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQG 552
Query: 193 PPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
PG A P +P A G +A G P P P
Sbjct: 553 TPG--MAPPPAP---ATASASAGTTNTATTAGPAPGGPAQPPPTPQP 594
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/227 (27%), Positives = 78/227 (34%), Gaps = 34/227 (14%)
Query: 32 GAGAGRSPAARQVAPPGGP---SSLA--RTHSRRHPDHAPPPGR---PSCSRPLCAGSSC 83
G G P APP GP SS+A T+ + APPPG P+ S P S
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 84 LATPEPAR------SPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRV 137
+ EP S +PG G+P A P+ PG G G + P +PTR
Sbjct: 443 QSV-EPVVMMHMNIQDSGTQPG-GVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIAR 500
Query: 138 PVPAAQISLRWRSGREARPGGPQA-----GRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 192
P P R + PGGP G A A + L P + Q
Sbjct: 501 PTPP--------QARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQG 552
Query: 193 PPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
PG A P +P A G +A G P P P
Sbjct: 553 TPG--MAPPPAP---ATASASAGTTNTATTAGPAPGGPAQPPPTPQP 594
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/227 (27%), Positives = 78/227 (34%), Gaps = 34/227 (14%)
Query: 32 GAGAGRSPAARQVAPPGGP---SSLA--RTHSRRHPDHAPPPGR---PSCSRPLCAGSSC 83
G G P APP GP SS+A T+ + APPPG P+ S P S
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 84 LATPEPAR------SPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRV 137
+ EP S +PG G+P A P+ PG G G + P +PTR
Sbjct: 443 QSV-EPVVMMHMNIQDSGTQPG-GVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIAR 500
Query: 138 PVPAAQISLRWRSGREARPGGPQA-----GRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 192
P P R + PGGP G A A + L P + Q
Sbjct: 501 PTPP--------QARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQG 552
Query: 193 PPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
PG A P +P A G +A G P P P
Sbjct: 553 TPG--MAPPPAP---ATASASAGTTNTATTAGPAPGGPAQPPPTPQP 594
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/227 (27%), Positives = 78/227 (34%), Gaps = 34/227 (14%)
Query: 32 GAGAGRSPAARQVAPPGGP---SSLA--RTHSRRHPDHAPPPGR---PSCSRPLCAGSSC 83
G G P APP GP SS+A T+ + APPPG P+ S P S
Sbjct: 389 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 448
Query: 84 LATPEPAR------SPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRV 137
+ EP S +PG G+P A P+ PG G G + P +PTR
Sbjct: 449 QSV-EPVVMMHMNIQDSGTQPG-GVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIAR 506
Query: 138 PVPAAQISLRWRSGREARPGGPQA-----GRAGDPKADQAMHLQPAWAPKLQPPSVCRQQ 192
P P R + PGGP G A A + L P + Q
Sbjct: 507 PTPP--------QARPSHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQG 558
Query: 193 PPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
PG A P +P A G +A G P P P
Sbjct: 559 TPG--MAPPPAP---ATASASAGTTNTATTAGPAPGGPAQPPPTPQP 600
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/190 (26%), Positives = 69/190 (36%), Gaps = 33/190 (17%)
Query: 38 SPAARQVAP-PGGPSSLARTHSRRHPDHAPPPGRP-----SCSRPLCAGSSCLATPEPAR 91
SP+ + P P GP+ L HS+ A P G P + S GS + P P++
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ 592
Query: 92 SPSIAE-PGPGIPV-----AAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQIS 145
P A P P +P A + VI G +T +PP P G R P P A
Sbjct: 593 GPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPGA--- 648
Query: 146 LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 205
+ + +PG P + R G P P P G +P SP
Sbjct: 649 YKTATPPGYKPGSPPSFRTGTP-----------------PGYRGTSPPAGPGTFKPGSPT 691
Query: 206 LGTRARCPCG 215
+G P G
Sbjct: 692 VGPGPLPPAG 701
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 18/59 (30%)
Query: 46 PPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCA------GSSCLATPE----PARSPS 94
PP GPS L P PPP P+ PL A + TPE PARSPS
Sbjct: 698 PPAGPSGL--------PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 27.7 bits (60), Expect = 9.5
Identities = 37/156 (23%), Positives = 54/156 (34%), Gaps = 25/156 (16%)
Query: 31 AGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPA 90
A + G +Q PP P S++ + + P PP + P+ G + + P PA
Sbjct: 240 AASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPP------TTPV-GGGNLPSAPPPA 292
Query: 91 RSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRS 150
P + P P A++P+ A P L +P P A
Sbjct: 293 NFPHVTPNLP--PPPALRPL--------NNASASPPGLGAQPLPGHLPSPHAM-----GQ 337
Query: 151 GREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPP 186
G P GP+ G P L PA + PP
Sbjct: 338 GMGGLPPGPEKGPTLAPSPHS---LPPASSSAPAPP 370
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/190 (26%), Positives = 69/190 (36%), Gaps = 33/190 (17%)
Query: 38 SPAARQVAP-PGGPSSLARTHSRRHPDHAPPPGRP-----SCSRPLCAGSSCLATPEPAR 91
SP+ + P P GP+ L HS+ A P G P + S GS + P P++
Sbjct: 533 SPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSPSQ 592
Query: 92 SPSIAE-PGPGIPV-----AAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQIS 145
P A P P +P A + VI G +T +PP P G R P P A
Sbjct: 593 GPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGK-RAPSPGA--- 648
Query: 146 LRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRARPHSPH 205
+ + +PG P + R G P P P G +P SP
Sbjct: 649 YKTATPPGYKPGSPPSFRTGTP-----------------PGYRGTSPPAGPGTFKPGSPT 691
Query: 206 LGTRARCPCG 215
+G P G
Sbjct: 692 VGPGPLPPAG 701
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 18/59 (30%)
Query: 46 PPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCA------GSSCLATPE----PARSPS 94
PP GPS L P PPP P+ PL A + TPE PARSPS
Sbjct: 698 PPAGPSGL--------PSLPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPS 748
Score = 27.7 bits (60), Expect = 9.5
Identities = 37/156 (23%), Positives = 54/156 (34%), Gaps = 25/156 (16%)
Query: 31 AGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPA 90
A + G +Q PP P S++ + + P PP + P+ G + + P PA
Sbjct: 240 AASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPP------TTPV-GGGNLPSAPPPA 292
Query: 91 RSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRS 150
P + P P A++P+ A P L +P P A
Sbjct: 293 NFPHVTPNLP--PPPALRPL--------NNASASPPGLGAQPLPGHLPSPHAM-----GQ 337
Query: 151 GREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPP 186
G P GP+ G P L PA + PP
Sbjct: 338 GMGGLPPGPEKGPTLAPSPHS---LPPASSSAPAPP 370
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/166 (28%), Positives = 59/166 (35%), Gaps = 30/166 (18%)
Query: 36 GRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPARSPSI 95
G +P A AP G P++ A P PPP + + P A + A SP
Sbjct: 105 GATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGP 164
Query: 96 AEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGRE-A 154
A+PGP AA P+ P A P ++P G R P PA + RE
Sbjct: 165 AQPGPRAQRAA--PLAAP-----PPAPAAPPAVAPPAGPRRAPPPAV-------AAREPP 210
Query: 155 RPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPPGNSRAR 200
P PQ PA + QPP Q PP R
Sbjct: 211 LPPPPQ---------------PPAPPQQQQPPPPQPQPPPEGGAVR 241
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/138 (29%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 65 APPPGRPSCSRPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTE 124
A PP P R A ++ A P P+ A P P PVAA P P
Sbjct: 106 ATPPAPPRAPRGAPAAAAAAAPP-----PTPAPPPPPAPVAAAAPARAPRAAAAAATAPP 160
Query: 125 NP-PLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKL 183
+P P P R AA A P GP R P A A +P P
Sbjct: 161 SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGP---RRAPPPAVAAR--EPPLPPPP 215
Query: 184 QPPSVCRQQPPGNSRARP 201
QPP+ +QQ P + +P
Sbjct: 216 QPPAPPQQQQPPPPQPQP 233
Score = 32.7 bits (73), Expect = 0.29
Identities = 38/131 (29%), Positives = 48/131 (36%), Gaps = 30/131 (22%)
Query: 28 SARAGAGAGRSPAARQVAPPG-GPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT 86
+A A A A R+ AA APP GP+ R P APPP
Sbjct: 141 AAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPA----------------- 183
Query: 87 PEPARSPSIAEP-----GPGIPVAAIKPVILPGGGGCTGARTENPP-----LSPTRGDCR 136
PA P++A P P VAA +P + P + + PP P G R
Sbjct: 184 --PAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVR 241
Query: 137 VPVPAAQISLR 147
A +SLR
Sbjct: 242 AGGAARPVSLR 252
Score = 31.6 bits (70), Expect = 0.66
Identities = 41/160 (25%), Positives = 53/160 (33%), Gaps = 28/160 (17%)
Query: 30 RAGAGAGRSP--------------AARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSR 75
RA A A +P AA APP P++ P APPP +
Sbjct: 150 RAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREP 209
Query: 76 PLCAGSSCLATPEPARSP-----------SIAEPGPGIPVAAIKPVILPGGGGCTGARTE 124
PL A P+ + P ++ G PV+ + V GG G G R
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLT 269
Query: 125 NPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRA 164
+G A R R G A P G + GRA
Sbjct: 270 R---GRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRA 306
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 2e-04
Identities = 57/235 (24%), Positives = 75/235 (31%), Gaps = 47/235 (20%)
Query: 36 GRSPAARQVAPPGGPSSLA---------------------RTHSRRHPDHAPPPGRPSCS 74
GRS +A+ +PP GP R PD PPP PS
Sbjct: 133 GRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPV-PSTP 191
Query: 75 RPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGG-------GCTGARTENPP 127
RP+ + +P P PGP P GGG + + PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251
Query: 128 LSPTRG---DCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQ 184
L PT D + P P + R REA P P +P +
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN------------KPPVPSTPR 299
Query: 185 PPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
P + + PP +RP P L + G E R + L + P PSP
Sbjct: 300 PSASSQAPPPPPPPSRPGPPPLPPSS---SGNDETPRLPQRNLSLSSSTPPLPSP 351
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/141 (27%), Positives = 47/141 (33%), Gaps = 23/141 (16%)
Query: 108 KPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDP 167
+P +LP GG T A+ P SP G R PVP+ G + P PQ R P
Sbjct: 125 RPPLLPPGGRSTSAK----PFSPPSGPGRFPVPS--------PGHRSGPPEPQRNRMPPP 172
Query: 168 KADQAMHLQPAWAPKLQPPSVCRQQP--------PGNSR---ARPHSPHLGTRARCPCGC 216
+ D P P + P PG R P P G
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGG 232
Query: 217 GEARRSALQQLHGGGNRPSAP 237
G R+S L NRP P
Sbjct: 233 GSIRQSPLSSSSPFSNRPPLP 253
Score = 38.5 bits (88), Expect = 0.005
Identities = 58/219 (26%), Positives = 77/219 (35%), Gaps = 32/219 (14%)
Query: 32 GAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPAR 91
G G+ R +P L T SR D PPP P +RP + P
Sbjct: 231 GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN 290
Query: 92 SPSI-AEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP-TRGDCRVP-VPAAQISLRW 148
P + + P P A P P +R PPL P + G+ P +P +SL
Sbjct: 291 KPPVPSTPRPSASSQAPPPPPPP-------SRPGPPPLPPSSSGNDETPRLPQRNLSL-- 341
Query: 149 RSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPP--------GNSRAR 200
+ P P GR+G + P P PP PP SRA
Sbjct: 342 ---SSSTPPLPSPGRSGPLPPPPSERPPP---PVRDPPGRSGPLPPPPPVSRNGSTSRAL 395
Query: 201 PHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
P +P L +R+ G R L +RPSA +P
Sbjct: 396 PATPQLPSRS----GVDSPRSGPRPPL--PPDRPSAGAP 428
Score = 33.9 bits (76), Expect = 0.13
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 27/137 (19%)
Query: 26 QPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDH-------APPPGRPSCSRPLC 78
+PSA + A P +R PP PSS + R P PP P S PL
Sbjct: 299 RPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLP 358
Query: 79 AGSSCLATPEPARSPSIAEPGPGIPVAAIKPVI--------------LPGGGGCTGART- 123
S P P R P PG P+ PV LP G R+
Sbjct: 359 PPPS-ERPPPPVRDP----PGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSG 413
Query: 124 ENPPLSPTRGDCRVPVP 140
PPL P R P P
Sbjct: 414 PRPPLPPDRPSAGAPPP 430
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 43.1 bits (100), Expect = 2e-04
Identities = 57/235 (24%), Positives = 75/235 (31%), Gaps = 47/235 (20%)
Query: 36 GRSPAARQVAPPGGPSSLA---------------------RTHSRRHPDHAPPPGRPSCS 74
GRS +A+ +PP GP R PD PPP PS
Sbjct: 133 GRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIPPPV-PSTP 191
Query: 75 RPLCAGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGG-------GCTGARTENPP 127
RP+ + +P P PGP P GGG + + PP
Sbjct: 192 RPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPP 251
Query: 128 LSPTRG---DCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQ 184
L PT D + P P + R REA P P +P +
Sbjct: 252 LPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN------------KPPVPSTPR 299
Query: 185 PPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
P + + PP +RP P L + G E R + L + P PSP
Sbjct: 300 PSASSQAPPPPPPPSRPGPPPLPPSS---SGNDETPRLPQRNLSLSSSTPPLPSP 351
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/141 (27%), Positives = 47/141 (33%), Gaps = 23/141 (16%)
Query: 108 KPVILPGGGGCTGARTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDP 167
+P +LP GG T A+ P SP G R PVP+ G + P PQ R P
Sbjct: 125 RPPLLPPGGRSTSAK----PFSPPSGPGRFPVPS--------PGHRSGPPEPQRNRMPPP 172
Query: 168 KADQAMHLQPAWAPKLQPPSVCRQQP--------PGNSR---ARPHSPHLGTRARCPCGC 216
+ D P P + P PG R P P G
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNRGTALGG 232
Query: 217 GEARRSALQQLHGGGNRPSAP 237
G R+S L NRP P
Sbjct: 233 GSIRQSPLSSSSPFSNRPPLP 253
Score = 38.5 bits (88), Expect = 0.005
Identities = 58/219 (26%), Positives = 77/219 (35%), Gaps = 32/219 (14%)
Query: 32 GAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATPEPAR 91
G G+ R +P L T SR D PPP P +RP + P
Sbjct: 231 GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNN 290
Query: 92 SPSI-AEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSP-TRGDCRVP-VPAAQISLRW 148
P + + P P A P P +R PPL P + G+ P +P +SL
Sbjct: 291 KPPVPSTPRPSASSQAPPPPPPP-------SRPGPPPLPPSSSGNDETPRLPQRNLSL-- 341
Query: 149 RSGREARPGGPQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQQPP--------GNSRAR 200
+ P P GR+G + P P PP PP SRA
Sbjct: 342 ---SSSTPPLPSPGRSGPLPPPPSERPPP---PVRDPPGRSGPLPPPPPVSRNGSTSRAL 395
Query: 201 PHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
P +P L +R+ G R L +RPSA +P
Sbjct: 396 PATPQLPSRS----GVDSPRSGPRPPL--PPDRPSAGAP 428
Score = 33.9 bits (76), Expect = 0.13
Identities = 40/137 (29%), Positives = 46/137 (33%), Gaps = 27/137 (19%)
Query: 26 QPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDH-------APPPGRPSCSRPLC 78
+PSA + A P +R PP PSS + R P PP P S PL
Sbjct: 299 RPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLP 358
Query: 79 AGSSCLATPEPARSPSIAEPGPGIPVAAIKPVI--------------LPGGGGCTGART- 123
S P P R P PG P+ PV LP G R+
Sbjct: 359 PPPS-ERPPPPVRDP----PGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSG 413
Query: 124 ENPPLSPTRGDCRVPVP 140
PPL P R P P
Sbjct: 414 PRPPLPPDRPSAGAPPP 430
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 43.1 bits (100), Expect = 2e-04
Identities = 53/215 (24%), Positives = 68/215 (31%), Gaps = 45/215 (20%)
Query: 32 GAGAGRSPAARQVAPPG----GPSSLARTHSRRHPDH---------APPPGRPSCSRPLC 78
G+ G+ P P G SS + TH H H P G+ S+
Sbjct: 1210 GSKRGKGPFQMPPPPTGQASASSSSASSTHHHHHHHHHGHSHGGLGVLPDGQ---SKLQA 1266
Query: 79 AGSSCLATPEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTRG-DCRV 137
+ P PA P + P +P +P LP G PP+ P R
Sbjct: 1267 LHAQYCQGPGPAPPPYLPPQQPSLPPPPQQPPPLPQLGSIPPPPASAPPVGPHRHFHAHG 1326
Query: 138 PVPAAQISLRWRSGREARPGG---PQAGRAGDPKADQAMHLQPAWAPKLQPPSVCRQ--- 191
PVP Q R GR R G PQ G Q P ++P Q P +Q
Sbjct: 1327 PVPGPQHYTLGRPGRAPRRGAGGHPQFAPHGRHPLHQPTSPLPLYSPAPQHPPAHKQGPK 1386
Query: 192 ----------------------QPPGNSRARPHSP 204
+PPG S + PH P
Sbjct: 1387 HFIFSHHPQMMPAAGAAGGPGSRPPGGSYSHPHHP 1421
Score = 27.7 bits (60), Expect = 9.5
Identities = 29/106 (27%), Positives = 34/106 (32%), Gaps = 20/106 (18%)
Query: 27 PSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLAT 86
P+A A G G PPGG S HP H P P P L
Sbjct: 1398 PAAGAAGGPGS-------RPPGG--------SYSHPHHPQSPLSPHSPIPPHPSYPPLPP 1442
Query: 87 PEPARSPSIAEPGPGIPVAAIKPVILPGGGGCTGARTENPPLSPTR 132
P P S P P + P+ G G + NP P+R
Sbjct: 1443 PSPHTPHS-----PLPPTSPHGPLHASGPPGTANPPSANPKAKPSR 1483
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 43.1 bits (100), Expect = 2e-04
Identities = 68/251 (27%), Positives = 90/251 (35%), Gaps = 50/251 (19%)
Query: 16 WRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSR 75
+R +L P A GA +PA A SS + + S S
Sbjct: 55 FREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSS--------------SS 100
Query: 76 PLCAGSSCLATPEPARSPSIAEPG----PGIPVAAIKPVI---------LPGGGGCTGAR 122
+ SS ++P PA P+ + P PG+P AA V+ LPGGGG A
Sbjct: 101 ASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAAV 160
Query: 123 TENPPLSPTRGDCRV------------PVPAAQISLRWRSGREARPGGPQAGRAGDPKAD 170
E L G R+ P PA + S E GP AG+ + D
Sbjct: 161 AEIGALGRRLGISRLQGLGEGGDAWVPPTPAPMAT----SQPEEDSFGPGPRPAGEWEGD 216
Query: 171 QAMHLQPAWAPKLQPPSVCRQQP-PGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHG 229
+A A AP LQ R P P ++ H L T C G + R + L
Sbjct: 217 RA----EAQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTH-EAQCRRGASTRGS-TGLGA 270
Query: 230 GGNRPSAPSPV 240
GG P P+ V
Sbjct: 271 GGAGPGGPAGV 281
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 43.1 bits (100), Expect = 2e-04
Identities = 68/251 (27%), Positives = 90/251 (35%), Gaps = 50/251 (19%)
Query: 16 WRRMVLNFVFQPSARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSR 75
+R +L P A GA +PA A SS + + S S
Sbjct: 55 FREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSS--------------SS 100
Query: 76 PLCAGSSCLATPEPARSPSIAEPG----PGIPVAAIKPVI---------LPGGGGCTGAR 122
+ SS ++P PA P+ + P PG+P AA V+ LPGGGG A
Sbjct: 101 ASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVLNFIYSARLALPGGGGDGAAV 160
Query: 123 TENPPLSPTRGDCRV------------PVPAAQISLRWRSGREARPGGPQAGRAGDPKAD 170
E L G R+ P PA + S E GP AG+ + D
Sbjct: 161 AEIGALGRRLGISRLQGLGEGGDAWVPPTPAPMAT----SQPEEDSFGPGPRPAGEWEGD 216
Query: 171 QAMHLQPAWAPKLQPPSVCRQQP-PGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHG 229
+A A AP LQ R P P ++ H L T C G + R + L
Sbjct: 217 RA----EAQAPDLQCSLPRRPLPCPQCGKSFIHPKRLQTH-EAQCRRGASTRGS-TGLGA 270
Query: 230 GGNRPSAPSPV 240
GG P P+ V
Sbjct: 271 GGAGPGGPAGV 281
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/118 (32%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 122 RTENPPLSPTRGDCRVPVPAAQISLRWRSGREARPGGPQAGRAGDPKADQAMHLQPAWAP 181
R+ PPLSP +G + P G P P+ GR G P + PA P
Sbjct: 41 RSFKPPLSPEKGT-KASGPQTSAPSPRDPGLHTPPCSPRRGRRGRPTQEVC----PAPGP 95
Query: 182 KLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEARRSALQQLHGGGNRPSAPSP 239
QP C P G + RPH G R C G R AL L RP A P
Sbjct: 96 CAQPAGTCPPPPTGEKQPRPH----GFR----CSHGSKRAPAL--LGAPARRPPAHIP 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,192,851
Number of Sequences: 37866
Number of extensions: 1106078
Number of successful extensions: 8411
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 1020
Number of HSP's that attempted gapping in prelim test: 6517
Number of HSP's gapped (non-prelim): 2527
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.