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Search of human proteins with 239753012
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753012 PREDICTED: similar to hCG2024922 [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753012 PREDICTED: similar to hCG2024922 [Homo sapiens] 259 4e-70
gi|239747532 PREDICTED: hypothetical protein XP_002347654 [Homo ... 256 3e-69
gi|239741408 PREDICTED: hypothetical protein XP_002342164 [Homo ... 256 3e-69
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 30 0.41
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 30 0.41
gi|47716512 mex-3 homolog B [Homo sapiens] 29 0.91
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ... 28 1.2
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ... 28 1.2
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ... 28 1.2
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 28 1.6
gi|45439365 transmembrane protein 180 [Homo sapiens] 28 1.6
gi|110349719 titin isoform N2-A [Homo sapiens] 27 2.6
gi|110349717 titin isoform novex-2 [Homo sapiens] 27 2.6
gi|110349713 titin isoform novex-1 [Homo sapiens] 27 2.6
gi|110349715 titin isoform N2-B [Homo sapiens] 27 2.6
gi|149944548 neurobeachin-like 2 [Homo sapiens] 27 2.6
gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens] 27 2.6
gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens] 27 2.6
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 27 2.6
gi|31044434 kidney associated antigen 1 [Homo sapiens] 27 2.6
gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] 27 2.6
gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo... 27 3.5
gi|24371272 zinc finger, DHHC-type containing 14 isoform 2 [Homo... 27 3.5
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 27 4.5
gi|239754935 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo ... 27 4.5
gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo ... 27 4.5
gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo ... 27 4.5
gi|91208420 bassoon protein [Homo sapiens] 27 4.5
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 27 4.5
>gi|239753012 PREDICTED: similar to hCG2024922 [Homo sapiens]
Length = 117
Score = 259 bits (661), Expect = 4e-70
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP 60
MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP 60
Query: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
>gi|239747532 PREDICTED: hypothetical protein XP_002347654 [Homo
sapiens]
Length = 117
Score = 256 bits (654), Expect = 3e-69
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP 60
MPPSPEETEVPEAKGCHFLLRVVPVSGAFCE REGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60
Query: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
>gi|239741408 PREDICTED: hypothetical protein XP_002342164 [Homo
sapiens]
Length = 117
Score = 256 bits (654), Expect = 3e-69
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGP 60
MPPSPEETEVPEAKGCHFLLRVVPVSGAFCE REGHKLDTGNTHTFACGCFVSVPEPLGP
Sbjct: 1 MPPSPEETEVPEAKGCHFLLRVVPVSGAFCEPREGHKLDTGNTHTFACGCFVSVPEPLGP 60
Query: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL
Sbjct: 61 CCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQHTLHPAL 117
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 78 GWRPCQLPGQPRITAPGCP 96
GW+PC L GQP + CP
Sbjct: 869 GWKPCLLAGQPEALSAQCP 887
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 30.0 bits (66), Expect = 0.41
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 78 GWRPCQLPGQPRITAPGCP 96
GW+PC L GQP + CP
Sbjct: 907 GWKPCLLAGQPEALSAQCP 925
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 24 PVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGPCCSFLLVLQSPACAHLPG 78
P S A G+ + GN +T+ G SVP P G C L PA A PG
Sbjct: 320 PPSPALSFAHNGNNNNNGNGYTYTAGGEASVPSPDG--CPELQPTFDPAPAPPPG 372
>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 5 PEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
P E P ++ L R P + +F + D T+ G +++ +PLGPC S
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167
Query: 65 LLVLQS 70
L+ L S
Sbjct: 168 LIALPS 173
>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 5 PEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
P E P ++ L R P + +F + D T+ G +++ +PLGPC S
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167
Query: 65 LLVLQS 70
L+ L S
Sbjct: 168 LIALPS 173
>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
sapiens]
Length = 218
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 5 PEETEVPEAKGCHFLLRVVPVSGAFCELREGHKLDTGNTHTFACGCFVSVPEPLGPCCSF 64
P E P ++ L R P + +F + D T+ G +++ +PLGPC S
Sbjct: 109 PNPLEDPVSRSVTILARTEPSNDSF-NVSSVVSSDRPLTNRVLDGWLLALGDPLGPCNSS 167
Query: 65 LLVLQS 70
L+ L S
Sbjct: 168 LIALPS 173
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 48 CGCFVSVPEPLGP-CCSFLLVLQSPACAHLPGWR--------PCQLPGQPRITAPGCPQA 98
CG SVP P P CC F LQ + L G R P Q G + P +
Sbjct: 397 CG---SVPPPAPPPCCQFCEALQDACWSRLGGGRLPVACASLPTQEDGYCVLIGPAAERI 453
Query: 99 THRLHRLQLL 108
+ + LQLL
Sbjct: 454 SEEVGLLQLL 463
>gi|45439365 transmembrane protein 180 [Homo sapiens]
Length = 517
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 2 PPSPEETEVPEAK-GCHFLLRVVPVSGAFCEL 32
PP+P + P + GC +LL +VP++ A +L
Sbjct: 452 PPAPAPAQAPTLRQGCFYLLVLVPITCALLQL 483
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 70 SPACAHLPGWRPCQLPGQPRIT 91
S +C +P PC PGQP +T
Sbjct: 25673 SKSCEPVPARDPCDPPGQPEVT 25694
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 70 SPACAHLPGWRPCQLPGQPRIT 91
S +C +P PC PGQP +T
Sbjct: 19368 SKSCEPVPARDPCDPPGQPEVT 19389
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 70 SPACAHLPGWRPCQLPGQPRIT 91
S +C +P PC PGQP +T
Sbjct: 19301 SKSCEPVPARDPCDPPGQPEVT 19322
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 27.3 bits (59), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 70 SPACAHLPGWRPCQLPGQPRIT 91
S +C +P PC PGQP +T
Sbjct: 19176 SKSCEPVPARDPCDPPGQPEVT 19197
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 78 GWRPCQLPGQPRITAPGCPQATHRLHRL 105
G PCQL +P T +A HRL RL
Sbjct: 2331 GQTPCQLLKEPHPTRLSAEEAAHRLARL 2358
>gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]
Length = 649
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 57 PLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATH 100
P+ PC S L +QS A P W+ Q Q +TA ++H
Sbjct: 312 PMAPCQSALESIQSARAAQAPHWKSLQ---QQDVTAVPMSPSSH 352
>gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]
Length = 669
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 57 PLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATH 100
P+ PC S L +QS A P W+ Q Q +TA ++H
Sbjct: 332 PMAPCQSALESIQSARAAQAPHWKSLQ---QQDVTAVPMSPSSH 372
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 27.3 bits (59), Expect = 2.6
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 3 PSPEETEVPEAKGCHFLLRVVPVSGAFCELR-EGHKLDTGNTHTFACGCFVSVPEPLGPC 61
PSP T + + C LR +P + E E H+ D A C V+ P P G
Sbjct: 134 PSPALTLLLVDEACW--LRTLPQALTEAEANTEIHRKDD------ALWCRVTKPVPAGGL 185
Query: 62 CSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLHRLQLLLQ 110
S LL + P PG P P P H LQLL Q
Sbjct: 186 LSVLLTAE-----------PHSTPGHPVKKEPAEPTCPAPAHDLQLLPQ 223
>gi|31044434 kidney associated antigen 1 [Homo sapiens]
Length = 84
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 72 ACAHLPGWRPCQLPGQPRITAPGCPQATHR 101
A AHLP W P QL R AP Q HR
Sbjct: 34 AAAHLPRWPPPQLAASRR-EAPPLSQRPHR 62
>gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]
Length = 446
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 44 HTFACGCFVSVPEPLGPCCSFLLVLQSPACAHLPGWRPCQLPGQPRITAPGCPQATHRLH 103
HT CG P CS PAC+H+P W +L + + CP A R H
Sbjct: 323 HTCHCGV---------PACSHTCRCGVPACSHVPMW-SARLLTRAHVE---CPPAHTRAH 369
>gi|24371241 zinc finger, DHHC-type containing 14 isoform 1 [Homo
sapiens]
Length = 488
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 81 PCQLPGQPRITAPGCPQATHR-LHRLQLLLQHTLH 114
P + P PR+ A G P A R +H L L Q +LH
Sbjct: 441 PDEAPSPPRLLAAGSPLAHSRTMHVLGLASQDSLH 475
>gi|24371272 zinc finger, DHHC-type containing 14 isoform 2 [Homo
sapiens]
Length = 473
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 81 PCQLPGQPRITAPGCPQATHR-LHRLQLLLQHTLH 114
P + P PR+ A G P A R +H L L Q +LH
Sbjct: 426 PDEAPSPPRLLAAGSPLAHSRTMHVLGLASQDSLH 460
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 84 LPGQPRITAPGCPQATHRLHRLQLLLQHTLHPA 116
LP +P P PQ H++HR+Q + H HPA
Sbjct: 22 LPERPTKRRP--PQPLHQVHRVQFV--HRAHPA 50
>gi|239754935 PREDICTED: hypothetical protein [Homo sapiens]
Length = 397
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 71 PACAHLPGWRPCQLPG 86
PAC HL RPC PG
Sbjct: 293 PACCHLAPLRPCLSPG 308
>gi|239749477 PREDICTED: hypothetical protein XP_002347062 [Homo
sapiens]
Length = 397
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 71 PACAHLPGWRPCQLPG 86
PAC HL RPC PG
Sbjct: 293 PACCHLAPLRPCLSPG 308
>gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
sapiens]
Length = 324
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 70 SPACAHLPGWRPCQLPGQPRITAP 93
SP A L GW PC +P P + P
Sbjct: 225 SPTAAPLQGWHPCGVPLIPSGSPP 248
>gi|239743615 PREDICTED: hypothetical protein XP_002342915 [Homo
sapiens]
Length = 397
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 71 PACAHLPGWRPCQLPG 86
PAC HL RPC PG
Sbjct: 293 PACCHLAPLRPCLSPG 308
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 68 LQSPAC--AHLPGWRPCQLPGQPRITAPGCPQATHR 101
L SPA AH P +P P Q R PG PQ R
Sbjct: 242 LHSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSR 277
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 81 PCQLPGQPR------ITAPGCPQATHRLH 103
PCQ P P +T+PG +HRLH
Sbjct: 142 PCQSPSHPEELHSSTLTSPGPSPPSHRLH 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.493
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,513,424
Number of Sequences: 37866
Number of extensions: 344652
Number of successful extensions: 1089
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 54
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.