Guide to the Human Genome
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Search of human proteins with 239752841

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752841 PREDICTED: hypothetical protein [Homo sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752841 PREDICTED: hypothetical protein [Homo sapiens]           198   7e-52
gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo ...   198   7e-52
gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo ...   198   7e-52
gi|40018612 MyoD family inhibitor domain containing protein isof...    37   0.003
gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]                36   0.006
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]            36   0.006
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ...    36   0.006
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ...    36   0.006
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo...    35   0.010
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             35   0.017
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ...    34   0.022
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ...    34   0.022
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              34   0.029
gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo ...    33   0.037
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    33   0.037
gi|28875797 small protein rich in arginine and glycine [Homo sap...    33   0.049
gi|239756776 PREDICTED: similar to transformation related protei...    33   0.064
gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo ...    33   0.064
gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo ...    33   0.064
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ...    33   0.064
gi|13129006 nucleolar protein GU2 [Homo sapiens]                       33   0.064
gi|188497758 ubiquitin associated protein 2-like isoform a [Homo...    33   0.064
gi|188497756 ubiquitin associated protein 2-like isoform b [Homo...    33   0.064
gi|46309849 hypothetical protein LOC57035 [Homo sapiens]               33   0.064
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]            32   0.083
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ...    32   0.083
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]                   32   0.11 

>gi|239752841 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 99

 Score =  198 bits (504), Expect = 7e-52
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
          MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60

Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
          RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99


>gi|239747371 PREDICTED: hypothetical protein XP_002346571 [Homo
          sapiens]
          Length = 99

 Score =  198 bits (504), Expect = 7e-52
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
          MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60

Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
          RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99


>gi|239741196 PREDICTED: hypothetical protein XP_002342133 [Homo
          sapiens]
          Length = 99

 Score =  198 bits (504), Expect = 7e-52
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
          MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS
Sbjct: 1  MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60

Query: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99
          RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ
Sbjct: 61 RRRRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRRRVLQ 99


>gi|40018612 MyoD family inhibitor domain containing protein
          isoform p40 [Homo sapiens]
          Length = 355

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 6  VARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
          VA  ++ G +RR    +AG    GRA  G     V P GR+    RR   F  R RRRRR
Sbjct: 12 VAATAASGLSRR----EAG----GRA--GAAAAVVRPPGRKCGRCRRLANFPGRKRRRRR 61

Query: 66 -----GGRGRCSGAL-SLAVCPGAPEPAFYTGRRRRR 96
                  G C  A+ SL   P +P      GRR RR
Sbjct: 62 RKGLGATTGGCGEAVSSLHPAPHSPSSVRPAGRRARR 98


>gi|71773208 alpha-2C-adrenergic receptor [Homo sapiens]
          Length = 462

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 15  ARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
           A  RRR++  ++R GR + G  GGA G  G+ A  G  A    + +  R  G  GR S A
Sbjct: 291 AAERRRRRGALRRGGRRRAGAEGGAGGADGQGAGPG--AAESGALTASRSPGPGGRLSRA 348

Query: 75  LSLAVCPGAPEPAFYTGRRRR 95
            S +V        F+  RRRR
Sbjct: 349 SSRSV-------EFFLSRRRR 362



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 8   RRSSPGRARRRRRQQAGVQRTGRAQRGRGGG-------------AVGPVGREARAGRRAG 54
           RR   G  RR  R++AG +       G+G G             + GP GR +RA  R+ 
Sbjct: 294 RRRRRGALRRGGRRRAGAEGGAGGADGQGAGPGAAESGALTASRSPGPGGRLSRASSRSV 353

Query: 55  VFRSRSRRRRR 65
            F    RRR R
Sbjct: 354 EFFLSRRRRAR 364


>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 236

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 20  RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
           +QQ G +  G+  R   GRG GA+G  G   RAG R    G    RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225


>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
           sapiens]
          Length = 236

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 20  RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
           +QQ G +  G+  R   GRG GA+G  G   RAG R    G    RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225


>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
           sapiens]
          Length = 236

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 20  RQQAGVQRTGRAQR---GRGGGAVGPVGREARAGRRA---GVFRSRSRRRRRGGRG 69
           +QQ G +  G+  R   GRG GA+G  G   RAG R    G    RS R R GGRG
Sbjct: 170 QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225


>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
            sapiens]
          Length = 1802

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 11/72 (15%)

Query: 14   RARRRRRQQAGVQRTGRAQRGRGG-GAVGPVGREARAGR-RAGVFR---------SRSRR 62
            R +R+ R+Q G  +     RG GG G  G  GR +R GR R G  R         +R R 
Sbjct: 1649 RPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRG 1708

Query: 63   RRRGGRGRCSGA 74
            R RGGRG   GA
Sbjct: 1709 RGRGGRGASRGA 1720



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 13   GRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR 64
            GR  R  R   G    GR  RGRGGG     GR  R GR A    +R++R R
Sbjct: 1677 GRWGRWSRGGRGRGGRGRGSRGRGGGGTRGRGR-GRGGRGASRGATRAKRAR 1727


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 29  GRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS------------ 76
           G A  GR G    P  RE  A RR G +  R RRR  GG G     L             
Sbjct: 581 GGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAH 640

Query: 77  --LAVCPGAPEPAFYTGRRRR 95
             + V P A  P    GR  R
Sbjct: 641 GHVVVAPAAAAPTAREGRAGR 661



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 17/75 (22%)

Query: 17  RRRRQQAGV--QRTGRAQRGRGGGAV-----------GPVGREARAGRRAGVFRSRSRRR 63
           RRR   AG    R GR +  RGGG             G  GR A    R G    R RRR
Sbjct: 323 RRRAGHAGSFWLRGGRDRLRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGG----RGRRR 378

Query: 64  RRGGRGRCSGALSLA 78
           ++G RGR      LA
Sbjct: 379 QQGRRGRRQAGPGLA 393



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 34/115 (29%), Positives = 36/115 (31%), Gaps = 34/115 (29%)

Query: 14  RARRRRRQQAGVQRTGRAQRGRGGG-------------------------------AVGP 42
           RA RRR     V   GR   G GGG                               A   
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912

Query: 43  VGREARAGR--RAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPA-FYTGRRR 94
            G  A  GR  R G   + S R R G RGR S   +     G   PA    GRRR
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRR 967



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 6    VARRSSPGRARRRRRQQAGVQRTGRA--QRGRGGGAVGPVGREARAGRRAGVFRSRSRRR 63
            +A  + P RA   RR+  G     RA  Q    GG V  V   ARAG   GV   R RR 
Sbjct: 952  LAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGV---RGRRP 1008

Query: 64   RR 65
            RR
Sbjct: 1009 RR 1010



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 46 EARAGRRAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPAF 88
          E RA RR     + +R    G R   SG+      P AP P+F
Sbjct: 35 ENRAARRKTKQGASARLSASGSRSPKSGSSETQEAPSAPRPSF 77



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 32  QRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR-RGGRGRCSGALSLAVCPGAPEPAFYT 90
           + G  GGA G  G  A  G  AG    R R+RR R GR R  GA ++A        A   
Sbjct: 821 EAGVAGGARG--GGAAAGGPLAGAVVQRMRQRRVRAGRRRV-GARAVAAAGRQGAGAGGG 877

Query: 91  GRRRR 95
           GRR R
Sbjct: 878 GRRVR 882



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 10  SSPGRARRRRRQQAGV-QRTGRAQRGRGGGAVGPVGREARAGRRAG-------VFRSRSR 61
           ++P R     R++ G   R  R + G GGG  GP  ++   G  AG       V  + + 
Sbjct: 592 AAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAA 651

Query: 62  RRRRGGRGRCSGALSLAVCP----GAP 84
              R GR    G +++ VCP    GAP
Sbjct: 652 PTAREGRAGRHGHVAV-VCPQVAAGAP 677


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 29  GRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS------------ 76
           G A  GR G    P  RE  A RR G +  R RRR  GG G     L             
Sbjct: 581 GGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAH 640

Query: 77  --LAVCPGAPEPAFYTGRRRR 95
             + V P A  P    GR  R
Sbjct: 641 GHVVVAPAAAAPTAREGRAGR 661



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 17/75 (22%)

Query: 17  RRRRQQAGV--QRTGRAQRGRGGGAV-----------GPVGREARAGRRAGVFRSRSRRR 63
           RRR   AG    R GR +  RGGG             G  GR A    R G    R RRR
Sbjct: 323 RRRAGHAGSFWLRGGRDRLRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGG----RGRRR 378

Query: 64  RRGGRGRCSGALSLA 78
           ++G RGR      LA
Sbjct: 379 QQGRRGRRQAGPGLA 393



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 34/115 (29%), Positives = 36/115 (31%), Gaps = 34/115 (29%)

Query: 14  RARRRRRQQAGVQRTGRAQRGRGGG-------------------------------AVGP 42
           RA RRR     V   GR   G GGG                               A   
Sbjct: 853 RAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAA 912

Query: 43  VGREARAGR--RAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPA-FYTGRRR 94
            G  A  GR  R G   + S R R G RGR S   +     G   PA    GRRR
Sbjct: 913 QGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRR 967



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 6    VARRSSPGRARRRRRQQAGVQRTGRA--QRGRGGGAVGPVGREARAGRRAGVFRSRSRRR 63
            +A  + P RA   RR+  G     RA  Q    GG V  V   ARAG   GV   R RR 
Sbjct: 952  LAGGAHPARAALGRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGV---RGRRP 1008

Query: 64   RR 65
            RR
Sbjct: 1009 RR 1010



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 46 EARAGRRAGVFRSRSRRRRRGGRGRCSGALSLAVCPGAPEPAF 88
          E RA RR     + +R    G R   SG+      P AP P+F
Sbjct: 35 ENRAARRKTKQGASARLSASGSRSPKSGSSETQEAPSAPRPSF 77



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 32  QRGRGGGAVGPVGREARAGRRAGVFRSRSRRRR-RGGRGRCSGALSLAVCPGAPEPAFYT 90
           + G  GGA G  G  A  G  AG    R R+RR R GR R  GA ++A        A   
Sbjct: 821 EAGVAGGARG--GGAAAGGPLAGAVVQRMRQRRVRAGRRRV-GARAVAAAGRQGAGAGGG 877

Query: 91  GRRRR 95
           GRR R
Sbjct: 878 GRRVR 882



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 10  SSPGRARRRRRQQAGV-QRTGRAQRGRGGGAVGPVGREARAGRRAG-------VFRSRSR 61
           ++P R     R++ G   R  R + G GGG  GP  ++   G  AG       V  + + 
Sbjct: 592 AAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPGLQDLLGGGHAGGAHGHVVVAPAAAA 651

Query: 62  RRRRGGRGRCSGALSLAVCP----GAP 84
              R GR    G +++ VCP    GAP
Sbjct: 652 PTAREGRAGRHGHVAV-VCPQVAAGAP 677


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 7   ARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVF----RSRSRR 62
           AR   PGRA    R+     R  R     G GA+    R   AGR    F    ++ + R
Sbjct: 218 ARVREPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPR 277

Query: 63  RRRGGRGRCSGALSLAVCP 81
              GG GR  GAL  A  P
Sbjct: 278 APGGGGGRNPGALGRAAPP 296


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 19  RRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGR 70
           R +++   R+  + +GRGG A G  GR  R  RR    RS +   RR GR R
Sbjct: 359 RGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 16/79 (20%)

Query: 14  RARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSG 73
           R RRRRR+++    +   +RGR         R  R     G  RS SR R     G   G
Sbjct: 387 RRRRRRRRRSRSSASAPRRRGR---------RRPRPAPPRGSSRSLSRARSSSDSGSGRG 437

Query: 74  ALSLAVCPG-APEPAFYTG 91
           A      PG  PEP    G
Sbjct: 438 A------PGPGPEPGSERG 450


>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
           sapiens]
          Length = 321

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 9   RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGP----VGREARAGRRAGVFRSRSRR-- 62
           RS P R   +   ++G +      + RGGG   P        A A  R G  RSR  +  
Sbjct: 119 RSGPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKI 178

Query: 63  RRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
           RRRG +   +GA S       P+ A   G RRR
Sbjct: 179 RRRGQKAAAAGAKSCGGGGKKPQKARAVGARRR 211


>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
           sapiens]
          Length = 231

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 9   RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGP----VGREARAGRRAGVFRSRSRR-- 62
           RS P R   +   ++G +      + RGGG   P        A A  R G  RSR  +  
Sbjct: 119 RSGPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPRRGQKAATAGAKSRGGGVRSRGGKKI 178

Query: 63  RRRGGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
           RRRG +   +GA S       P+ A   G RRR
Sbjct: 179 RRRGQKAAAAGAKSCGGGGKKPQKARAVGARRR 211


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 13   GRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSR--------SRRRR 64
            GR R  R ++    R  R   GRGGG  GP    A  GR A   RS          RRR+
Sbjct: 1044 GRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQ 1103

Query: 65   RG 66
            RG
Sbjct: 1104 RG 1105


>gi|239745791 PREDICTED: hypothetical protein XP_002343589 [Homo
           sapiens]
          Length = 117

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 1   MRELIVARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRS 60
           +R +++A R +  R RRRRR++    R    Q G G     P  RE   G          
Sbjct: 36  LRPVLLAPRQALSRRRRRRRRRRRRHRP-FCQPGNGSAPTVPSVREQNGG--------GG 86

Query: 61  RRRRRGGRGRCSGALSLAVCPGAPEPA 87
           +RRR  G  RC     L    G+P PA
Sbjct: 87  KRRREQGAERCETHAPL----GSPPPA 109


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/51 (37%), Positives = 23/51 (45%)

Query: 24  GVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
           G  +  R  RGRGG   G  G      R +G +  R R   RGGRG   G+
Sbjct: 207 GYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGS 257


>gi|28875797 small protein rich in arginine and glycine [Homo
           sapiens]
          Length = 248

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 15  ARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVF-RSRSRRRRRG-GRGRCS 72
           A R   ++ GV+  GR   GRGG   G +GR    GR  G+  R R     RG GRGR  
Sbjct: 146 APRMGLRRGGVR--GRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGR 203

Query: 73  GALSLAV 79
           GAL+  V
Sbjct: 204 GALARPV 210



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 6   VARRSSPGRAR--RRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRA 53
           V  R  PGR    R    + G+   GR   GRG G  G  GR    GR A
Sbjct: 156 VRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGA 205


>gi|239756776 PREDICTED: similar to transformation related protein
          53 inducible protein 13 [Homo sapiens]
          Length = 169

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
          QAG++    AQ GR         GG A+  VG+E    RRA  F  R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77


>gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo
          sapiens]
          Length = 169

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
          QAG++    AQ GR         GG A+  VG+E    RRA  F  R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77


>gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo
          sapiens]
          Length = 169

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 22 QAGVQRTGRAQRGR---------GGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
          QAG++    AQ GR         GG A+  VG+E    RRA  F  R +RRRR
Sbjct: 28 QAGLEPLSAAQHGRDAGGACHVAGGAALAQVGQEQ---RRARAFAHREQRRRR 77


>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
          sapiens]
          Length = 211

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 21/51 (41%), Positives = 23/51 (45%)

Query: 24 GVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGA 74
          G    GR+ RG GGGA G  G   + GR     R RS  R    R R  GA
Sbjct: 17 GAGSGGRSLRGGGGGAGGGGGGREKRGRPESPRRRRSGERASPARRRGPGA 67


>gi|13129006 nucleolar protein GU2 [Homo sapiens]
          Length = 737

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 13  GRARRRRRQQAGVQ--RTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGR 70
           G      RQ++G    R+GR+ R  GG + G  GR++R G R+G    +  RRR G R R
Sbjct: 670 GNTSSNSRQRSGWSSGRSGRSGRS-GGRSGGRSGRQSRQGSRSG--SRQDGRRRSGNRNR 726


>gi|188497758 ubiquitin associated protein 2-like isoform a [Homo
           sapiens]
          Length = 1087

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 19/87 (21%)

Query: 14  RARRRRRQQAGVQRTGR-AQRGR----------GGGAVGPVGREARAGRRAGVFRSRSRR 62
           R R   R++ G  R GR A RGR          G  + GP GR    GR       R R 
Sbjct: 126 RDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTERGR-------RGRG 178

Query: 63  RRRGGRGRCSGALSLAVCPGAPEPAFY 89
           R RGG GR  G  S A   G   PA Y
Sbjct: 179 RGRGGSGRRGGRFS-AQGMGTFNPADY 204


>gi|188497756 ubiquitin associated protein 2-like isoform b [Homo
           sapiens]
          Length = 983

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 33/87 (37%), Positives = 36/87 (41%), Gaps = 19/87 (21%)

Query: 14  RARRRRRQQAGVQRTGR-AQRGR----------GGGAVGPVGREARAGRRAGVFRSRSRR 62
           R R   R++ G  R GR A RGR          G  + GP GR    GR       R R 
Sbjct: 126 RDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGTKSGGPSGRGTERGR-------RGRG 178

Query: 63  RRRGGRGRCSGALSLAVCPGAPEPAFY 89
           R RGG GR  G  S A   G   PA Y
Sbjct: 179 RGRGGSGRRGGRFS-AQGMGTFNPADY 204


>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
          Length = 290

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 9   RSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAG------RRAGVFRSRSRR 62
           R S  R+R RRR Q   +R  R+       +     RE R G      R    +RSRSR 
Sbjct: 58  RRSKSRSRSRRRHQRKYRRYSRSYSRSRSRSRSRRYRERRYGFTRRYYRSPSRYRSRSRS 117

Query: 63  RRRG-GRGRCSGALSLA 78
           R R  GR  C  A ++A
Sbjct: 118 RSRSRGRSYCGRAYAIA 134


>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 18  RRRQQAGVQRTGRAQR-GRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS 76
           +R  Q    R+ R  R G GGG  G  G   R  R  G +    +  R  GRG   G L 
Sbjct: 24  QRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGE-GGDLQ 82

Query: 77  LAVCPGAPEPAFYTGRRR 94
           ++  PGA  PA +    R
Sbjct: 83  VSSGPGAAPPAEFRASAR 100


>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
           sapiens]
          Length = 255

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 18  RRRQQAGVQRTGRAQR-GRGGGAVGPVGREARAGRRAGVFRSRSRRRRRGGRGRCSGALS 76
           +R  Q    R+ R  R G GGG  G  G   R  R  G +    +  R  GRG   G L 
Sbjct: 24  QRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGE-GGDLQ 82

Query: 77  LAVCPGAPEPAFYTGRRR 94
           ++  PGA  PA +    R
Sbjct: 83  VSSGPGAAPPAEFRASAR 100


>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
          Length = 457

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 6   VARRSSPGRARRRRRQQAGVQRTGRAQRGRGGGAVGPVGREARAGRRAGVFRSRSRRRRR 65
           +A + + G A   ++  AG Q    A + + G A GP               S  +  +R
Sbjct: 261 LALKEAAGAAGSGKKAAAGAQ----ASQAQLGEAAGPASETPAGTESPHSSASPCQEHKR 316

Query: 66  GGRGRCSGALSLAVCPGAPEPAFYTGRRRR 95
           GG G   G  + A+ P  PEPA   G++++
Sbjct: 317 GGLGELKGTPAAALSP--PEPAPSPGQQQQ 344


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,390
Number of Sequences: 37866
Number of extensions: 202167
Number of successful extensions: 2591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 2017
Number of HSP's gapped (non-prelim): 727
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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