Guide to the Human Genome
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Name: LOC100290985 Sequence: fasta or formatted (99aa) NCBI GI: 239747371
Description:

PREDICTED: hypothetical protein XP_002346571

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         12           1
 C cysteine            2.0          2           1
 D aspartate           0.0          0           0
 E glutamate           3.0          3           1
 F phenylalanine       2.0          2           1
 G glycine            17.2         17           3
 H histidine           0.0          0           0
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine             4.0          4           1
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline             5.1          5           1
 Q glutamine           5.1          5           2
 R arginine           31.3         31           5
 S serine              6.1          6           2
 T threonine           2.0          2           1
 V valine              7.1          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346571 
LOC100293828          1.000   PREDICTED: hypothetical protein 
LOC100289301          1.000   PREDICTED: hypothetical protein XP_002342133 
MDFIC                 0.069   MyoD family inhibitor domain containing protein isof...
ADRA2C                0.064   alpha-2C-adrenergic receptor 
LOC100293136          0.064   PREDICTED: hypothetical protein 
LOC100290831          0.064   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.064   PREDICTED: hypothetical protein XP_002343591 
BRWD3                 0.058   bromodomain and WD repeat domain containing 3 [Homo...
LOC728767             0.058   PREDICTED: hypothetical protein 
LOC728767             0.058   PREDICTED: hypothetical protein 
LOC100127891          0.058   PREDICTED: hypothetical protein 
FLJ37078              0.058   hypothetical protein LOC222183 
LOC100292062          0.052   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.052   PREDICTED: hypothetical protein XP_002347697 
BAT2                  0.052   HLA-B associated transcript-2 
LOC100287488          0.046   PREDICTED: hypothetical protein XP_002343589 
FUS                   0.046   fusion (involved in t(12;16) in malignant liposarcoma...
C1orf77               0.046   small protein rich in arginine and glycine 
LOC100292894          0.046   PREDICTED: similar to transformation related protei...
LOC100291545          0.046   PREDICTED: hypothetical protein XP_002347773 
LOC100287118          0.046   PREDICTED: hypothetical protein XP_002343546 
LOC100288548          0.046   PREDICTED: hypothetical protein XP_002342129 
DDX50                 0.046   nucleolar protein GU2 
UBAP2L                0.046   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.046   ubiquitin associated protein 2-like isoform b [Homo...
C1orf63               0.046   hypothetical protein LOC57035 
LOC100287499          0.040   PREDICTED: hypothetical protein 
LOC100287499          0.040   PREDICTED: hypothetical protein XP_002343643 
FOXA2                 0.040   forkhead box A2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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