Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291545 Sequence: fasta or formatted (169aa) NCBI GI: 239751263
Description:

PREDICTED: hypothetical protein XP_002347773

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.8         30           3
 C cysteine            1.8          3           1
 D aspartate           5.3          9           2
 E glutamate           7.1         12           1
 F phenylalanine       0.6          1           1
 G glycine            11.2         19           2
 H histidine           4.7          8           1
 I isoleucine          0.6          1           1
 K lysine              2.4          4           1
 L leucine             7.1         12           2
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline             7.1         12           2
 Q glutamine           7.7         13           1
 R arginine           10.7         18           4
 S serine              1.8          3           1
 T threonine           1.8          3           1
 V valine              8.9         15           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347773 
LOC100292894          1.000   PREDICTED: similar to transformation related protei...
LOC100287118          1.000   PREDICTED: hypothetical protein XP_002343546 
LOC100292370          0.025   PREDICTED: hypothetical protein 
LOC100293828          0.025   PREDICTED: hypothetical protein 
LOC100290985          0.025   PREDICTED: hypothetical protein XP_002346571 
LOC100289301          0.025   PREDICTED: hypothetical protein XP_002342133 
TRIM67                0.022   tripartite motif-containing 67 
POU4F3                0.022   POU class 4 homeobox 3 
LOC100128598          0.016   PREDICTED: hypothetical protein 
LOC100128598          0.016   PREDICTED: hypothetical protein 
LOC100128598          0.016   PREDICTED: hypothetical protein 
OBSCN                 0.016   obscurin, cytoskeletal calmodulin and titin-interac...
PDCD7                 0.016   programmed cell death 7 
LOC100292572          0.016   PREDICTED: hypothetical protein 
LOC100288181          0.016   PREDICTED: hypothetical protein 
HLCS                  0.016   holocarboxylase synthetase 
SLC38A10              0.016   solute carrier family 38, member 10 isoform a 
SLC38A10              0.016   solute carrier family 38, member 10 isoform b 
MARCKS                0.013   myristoylated alanine-rich protein kinase C substra...
TTN                   0.013   titin isoform N2-A 
TTN                   0.013   titin isoform novex-2 
TTN                   0.013   titin isoform novex-1 
TTN                   0.013   titin isoform N2-B 
ZNF142                0.013   zinc finger protein 142 
LOC100291958          0.013   PREDICTED: hypothetical protein XP_002346017 
LOC646960             0.013   PREDICTED: similar to hCG1818432 
LOC100290443          0.013   PREDICTED: hypothetical protein XP_002346904 
LOC646960             0.013   PREDICTED: similar to hCG1818432 
LOC100287795          0.013   PREDICTED: hypothetical protein XP_002342737 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press