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Search of human proteins with 239752818
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752818 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|239747395 PREDICTED: hypothetical protein [Homo sapiens] 152 2e-37
gi|239741221 PREDICTED: hypothetical protein [Homo sapiens] 152 2e-37
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 44 8e-05
gi|209413756 synapsin III isoform IIIg [Homo sapiens] 40 0.001
gi|209413752 synapsin III isoform IIIa [Homo sapiens] 40 0.001
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.002
gi|89040494 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|171543895 ataxin 2 [Homo sapiens] 38 0.004
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 38 0.004
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 37 0.007
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 37 0.009
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ... 37 0.009
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 36 0.016
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 36 0.021
gi|100913192 AMP-activated protein kinase gamma2 subunit isoform... 36 0.021
gi|33186925 AMP-activated protein kinase gamma2 subunit isoform ... 36 0.021
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 35 0.027
gi|19923949 kinesin family member 12 [Homo sapiens] 35 0.035
gi|188536004 zinc finger protein 469 [Homo sapiens] 35 0.046
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 35 0.046
gi|239755429 PREDICTED: hypothetical protein [Homo sapiens] 34 0.060
gi|239749885 PREDICTED: hypothetical protein XP_002347195 [Homo ... 34 0.060
gi|239744187 PREDICTED: hypothetical protein XP_002343051 [Homo ... 34 0.060
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 34 0.060
gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens] 33 0.10
gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens] 33 0.10
gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens] 33 0.10
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 33 0.10
>gi|239752818 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 377 bits (969), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MGSLVAQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLS 60
MGSLVAQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLS
Sbjct: 1 MGSLVAQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLS 60
Query: 61 QTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPES 120
QTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPES
Sbjct: 61 QTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPES 120
Query: 121 RSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRRGWEGAARDA 180
RSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRRGWEGAARDA
Sbjct: 121 RSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRRGWEGAARDA 180
Query: 181 T 181
T
Sbjct: 181 T 181
>gi|239747395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 152 bits (383), Expect = 2e-37
Identities = 88/132 (66%), Positives = 93/132 (70%), Gaps = 10/132 (7%)
Query: 60 SQTYWSRGPLP--PQRSTPMASPARR----GQFPACYAKSPSAA-PRLGG---FFRKRLG 109
S Y +R P P+ S P S + G+ C A+ S PRL F L
Sbjct: 3 SLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLE 62
Query: 110 GSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 169
SEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG
Sbjct: 63 KSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 122
Query: 170 RRGWEGAARDAT 181
RRGWEGAARDAT
Sbjct: 123 RRGWEGAARDAT 134
>gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 152 bits (383), Expect = 2e-37
Identities = 88/132 (66%), Positives = 93/132 (70%), Gaps = 10/132 (7%)
Query: 60 SQTYWSRGPLP--PQRSTPMASPARR----GQFPACYAKSPSAA-PRLGG---FFRKRLG 109
S Y +R P P+ S P S + G+ C A+ S PRL F L
Sbjct: 3 SLPYHNRAPRARDPRHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLE 62
Query: 110 GSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 169
SEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG
Sbjct: 63 KSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALG 122
Query: 170 RRGWEGAARDAT 181
RRGWEGAARDAT
Sbjct: 123 RRGWEGAARDAT 134
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 43.9 bits (102), Expect = 8e-05
Identities = 50/173 (28%), Positives = 63/173 (36%), Gaps = 34/173 (19%)
Query: 3 SLVAQRSLPQPGSPRPRPPPFAAPYL-------------------AQAGRSCVRRARDLY 43
S ++QR P P P P PP AAP Q RS +
Sbjct: 335 SPLSQRHSPAPQCPSPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRRSPASPSCPSP 394
Query: 44 GSLRILPLPPTDCVVLSQTYWSRGPLPPQ------RSTPMASPARRGQFPACYAKSPSAA 97
R P+PP+ S + R P+PP R P P R YAK PS
Sbjct: 395 VPQRRSPVPPS---CQSPSPQRRSPVPPSCPAPQPRPPPPPPPGERTLAERAYAKPPSHH 451
Query: 98 PRLGGFFRKRLGGSEEAEDGPESRSAPPW----SHTPRSPRRIGVLSLWPGAP 146
+ G F+ R SE AE + ++PPW + T PR G PG P
Sbjct: 452 VKAG--FQGRRSYSELAEGAAYAGASPPWLQAEAATLPKPRAYGSELYGPGRP 502
>gi|209413756 synapsin III isoform IIIg [Homo sapiens]
Length = 579
Score = 39.7 bits (91), Expect = 0.001
Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 27/148 (18%)
Query: 11 PQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRG--P 68
PQ G P+PRPPP P AQ+ P P Q +G P
Sbjct: 426 PQLGQPQPRPPPQGGPRQAQS------------------PQPQRSGSPSQQRLSPQGQQP 467
Query: 69 LPPQRSTP--MASPARRGQFPACYAKSPSAAPRLGGFF----RKRLGGSEEAEDGPESRS 122
L PQ +P SP A SP+ A + G R + G ++ G ES+
Sbjct: 468 LSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKK 527
Query: 123 -APPWSHTPRSPRRIGVLSLWPGAPRAT 149
APP H +S LS + R T
Sbjct: 528 PAPPHPHLNKSQSLTNSLSTSDTSQRGT 555
>gi|209413752 synapsin III isoform IIIa [Homo sapiens]
Length = 580
Score = 39.7 bits (91), Expect = 0.001
Identities = 42/148 (28%), Positives = 54/148 (36%), Gaps = 27/148 (18%)
Query: 11 PQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRG--P 68
PQ G P+PRPPP P AQ+ P P Q +G P
Sbjct: 427 PQLGQPQPRPPPQGGPRQAQS------------------PQPQRSGSPSQQRLSPQGQQP 468
Query: 69 LPPQRSTP--MASPARRGQFPACYAKSPSAAPRLGGFF----RKRLGGSEEAEDGPESRS 122
L PQ +P SP A SP+ A + G R + G ++ G ES+
Sbjct: 469 LSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLASQPRPPVQGRSTSQQGEESKK 528
Query: 123 -APPWSHTPRSPRRIGVLSLWPGAPRAT 149
APP H +S LS + R T
Sbjct: 529 PAPPHPHLNKSQSLTNSLSTSDTSQRGT 556
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 38.9 bits (89), Expect = 0.002
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 10 LPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLP-PTDCVVLSQTYWSRGP 68
LP+P PRPRP P +P + AG C + G+ R + LP P + + R P
Sbjct: 376 LPRPSGPRPRPAPARSPSQSPAGTPCPVLS---LGARRGVTLPCPVPAEAAPRDFCQRFP 432
Query: 69 L--PPQRSTPMASPARRGQFPACYAKSPSAAP 98
P R P +P PA P A P
Sbjct: 433 ALEPSPRQPPARAPRPSPDLPAPLDACPWAPP 464
Score = 32.7 bits (73), Expect = 0.17
Identities = 46/180 (25%), Positives = 61/180 (33%), Gaps = 42/180 (23%)
Query: 10 LPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPL 69
L QPG P PP P CV+ + D + + S GP
Sbjct: 183 LKQPGPQEPLPPTLGPPL-----GGCVQ-------------VQMGDGLPRGSPHNSAGPR 224
Query: 70 PPQ--RSTPMASPARRGQFPACYAKS------PSAAPRLGGFFRKRLGGSEEAEDGPESR 121
P+ R++P P R P A + P P GG RLG E+G
Sbjct: 225 TPRLARASPPGEPFMRVAPPGLAAAAAARDSEPGPVPGAGGCGEDRLGSQPRPENG---- 280
Query: 122 SAPPWSHTPRSPRRI------GVLSLWPGAPRATF----ARAAENLSRGPASVGGALGRR 171
PP SH S R + G ++ G R + + N RG A+ G G R
Sbjct: 281 --PPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSAAPGPPRGPR 338
>gi|89040494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 38.9 bits (89), Expect = 0.002
Identities = 48/164 (29%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 13 PGSPRPRPPPFAAPYLAQAGRSCVRRARDLYG--SLRILPLPPTDCVVLSQTYWSRGPLP 70
PG PRPRP P R+ V ARDL + R P C V + SR P
Sbjct: 32 PGKPRPRPSALYGP------RARVLPARDLSSARARRDAFAEPRPCHV--GLFGSREAPP 83
Query: 71 PQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPESRSAPPWSHTP 130
P+ P+ P RR PR GG + G SE GP S P
Sbjct: 84 PR---PLCHPQRRAVEALTLRAVLEPGPRTGGVSARGTGTSEMIA-GPVECGERGSSFFP 139
Query: 131 RSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRRGWE 174
R P + + S W +P+ P+S GG WE
Sbjct: 140 RGPCQGLLQSQWVPSPK-------------PSSPGGKRFSSPWE 170
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 38.1 bits (87), Expect = 0.004
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 11 PQPGSP--RPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPL--PPTDCVVLSQTYWSR 66
P PG P R PP A+ G GS R+L L PP VVL S
Sbjct: 58 PGPGPPPSRQSSPPSASDCFGSNGNG---GGAFRPGSRRLLGLGGPPRPFVVLLLPLASP 114
Query: 67 G--PLPPQRSTPM---ASPARRGQF---PACYAKSPSAAPRLGGFF----------RKRL 108
G P P R++P+ ASP R G PA P+ P G +++
Sbjct: 115 GAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQ 174
Query: 109 GGSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGAL 168
++ + + + PP + R P G+L+ AP + + + + + P+SV A
Sbjct: 175 QQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAAT 234
Query: 169 GRRGWEGAAR 178
G G R
Sbjct: 235 SGGGRPGLGR 244
Score = 28.1 bits (61), Expect = 4.3
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 58 VLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDG 117
+LS T RGP + +SPA + + K +A RK E
Sbjct: 868 ILSNTEHKRGPEVTSQGVQTSSPACKQEKDDKEEKKDAAEQ-----VRKSTLNPNAKEFN 922
Query: 118 PESRSAPPWSHTPRSPR 134
P S S P S TP SPR
Sbjct: 923 PRSFSQPKPSTTPTSPR 939
Score = 26.9 bits (58), Expect = 9.6
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 64 WSRGP--LPPQRSTPMASPARRGQFPACYAKSPSA--APRLGGFFRKRLGGSEEAEDGPE 119
+ GP LPP+ +TP P+R P+ PSA +P KR+ + +GP
Sbjct: 567 YQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRM-----SSEGP- 620
Query: 120 SRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPAS 163
R +P PR+ R A R + + E +S P S
Sbjct: 621 PRMSPKAQRHPRNHR--------VSAGRGSISSGLEFVSHNPPS 656
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 38.1 bits (87), Expect = 0.004
Identities = 52/188 (27%), Positives = 63/188 (33%), Gaps = 34/188 (18%)
Query: 6 AQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWS 65
A + +P PG P + PP G L GS+ +L P DC +
Sbjct: 1250 APKDIPDPGPPGDQGPP------GPDGPRGAPGPPGLPGSVDLLRGEPGDCGL------- 1296
Query: 66 RGPLPPQRSTPMASPARRGQFPACYA----KSPSAAPRLGGFFRKRLGGSEEAEDGPESR 121
P PP P P +G FP C K P P G E+ GP R
Sbjct: 1297 --PGPPGPPGPPGPPGYKG-FPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGR 1353
Query: 122 SAPPWSHTPRS----PRRIGVLSLWPGAPRATFARAAENL-----SRGPASVG-----GA 167
P PR P + PG P A R E RGP+ G G
Sbjct: 1354 KGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGL 1413
Query: 168 LGRRGWEG 175
GRRG +G
Sbjct: 1414 DGRRGVDG 1421
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 37.4 bits (85), Expect = 0.007
Identities = 49/172 (28%), Positives = 58/172 (33%), Gaps = 28/172 (16%)
Query: 5 VAQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSL-RILPLPPTDCVVLSQTY 63
V Q P P PR PP L + RS +R + SL R LP PP
Sbjct: 573 VPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPP--------- 623
Query: 64 WSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGG-------FFRKRLGGSEEAED 116
P PP +P +PA + P ++P P LG E E
Sbjct: 624 ---APPPPPAPSPPPAPATSSRRP-LLLRAPQFTPSEAHLKIYESVLTPPPLGAPEAPEP 679
Query: 117 GPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAE-------NLSRGP 161
P P PR+ R LSL AP T AE LS GP
Sbjct: 680 EPPPADDSPAEPEPRAVGRTNHLSLPRFAPVVTTPVKAEVSPHGAPALSNGP 731
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 70 PPQRSTPMASPA--RRGQFPAC--YAKSPSAAP-RLGGFFRKRLGGSEEAEDGPESRSAP 124
P + TP + P R G A A+ P P + F K LGG + GP S P
Sbjct: 2078 PRGQGTPPSGPGVVRAGVLGAAGDRARPPEDLPSEIVDFVLKNLGGPGDGGAGPREESLP 2137
Query: 125 PWSHTPRSPRRIGVLSLWPGAPRATF-----ARAAENLSRGPA 162
P + L+ P P TF A LS GPA
Sbjct: 2138 PAPPLANGSQPSQGLTASPADPTRTFAWLPGAPGVRVLSLGPA 2180
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 37.0 bits (84), Expect = 0.009
Identities = 47/166 (28%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 19 RPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLP-PTDCVVLSQTYWSRGPLPPQRSTPM 77
+PPP +P LAQ+ +L+ LP P P C+ P PP TP
Sbjct: 195 QPPPMLSPGLAQSP------GVELHARTLSLPAPSPAPCLP--------PPAPPAARTPS 240
Query: 78 ASPARRGQFPACYAKSPSAA--PRLGGFFRKR---LGGSEEAEDGPESRSAPPWSHTPRS 132
A F A++ + A P GG +GG E ED S+++PP P +
Sbjct: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDSLASQTSPP---APPA 297
Query: 133 PRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGRRGWEGAAR 178
P + PGA R A R S GR W AR
Sbjct: 298 PVPSTARARSPGARRGARELAPRAGRRRQPS-----GRTSWRRRAR 338
>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
sapiens]
Length = 529
Score = 37.0 bits (84), Expect = 0.009
Identities = 46/164 (28%), Positives = 62/164 (37%), Gaps = 23/164 (14%)
Query: 20 PPPFAAPYLAQ--AGRSCVRRAR-----------DLYGSLRILPLPPTDCVVLSQTYWSR 66
PPP + + Q AGRS +R+ R L R+ P C + + R
Sbjct: 60 PPPASRDWYRQRRAGRSLIRQFRRTPEATPQGRLGLESRTRLAP-----CALRPDRFPRR 114
Query: 67 GPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPESRSAPPW 126
P PP + P A AR+ + SP R G +R G + GPE R+ P
Sbjct: 115 FPEPPPQPAPPAGGARKERDAGAADLSPRRPGRSG--VARRPGDARTQSAGPERRAHLPG 172
Query: 127 SHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGGALGR 170
P G +L P A A RA+ L+ G G GR
Sbjct: 173 PGA--GPGFCGARALLP-AFEALVVRASCPLNLGQVCRTGVAGR 213
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 36.2 bits (82), Expect = 0.016
Identities = 51/173 (29%), Positives = 65/173 (37%), Gaps = 32/173 (18%)
Query: 6 AQRSLPQPGSPRPRPPPFAAPYLAQAGRSCVRRAR-----DLYGSLRILPLPPTDCVVLS 60
A+R P+P PR P P A AQA SC RR R D R+ P P V
Sbjct: 447 AEREEPRPPRPRRGPAPTLA---AQAAGSC-RRWRSTAEIDAADGRRVRPRAPAARVP-- 500
Query: 61 QTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRL-----GGSEEAE 115
GP P ++P RR + + S +A RLG R+ GG E+E
Sbjct: 501 ----GPGPSP-------SAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESE 549
Query: 116 DGPESRSAPPWSHTPRSPRRIGVLSLWP----GAPRATFARAAENLSRGPASV 164
+P +S G L +WP A A+ A GPA V
Sbjct: 550 SSASEGESPAFSSASSDSDGSGGL-VWPQQLVAATAASGGGAGAGAPAGPAKV 601
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 35.8 bits (81), Expect = 0.021
Identities = 38/128 (29%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 11 PQPGSPRPRPPPFAAP-----YLAQA--GRSCVRRARDLYGSLRILPLPPTDCVVLSQTY 63
P P P+P PPP +P LA G+ R S R PLP T
Sbjct: 785 PPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLPTTQ-------- 836
Query: 64 WSRGP------LPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDG 117
+S GP LPP + P A + P A S S GG + + EE G
Sbjct: 837 YSPGPPSGATALPPTSAAPSAQGS-----PQPSASSSSQFSTSGGPWARERRAGEEPVPG 891
Query: 118 PESRSAPP 125
P + + PP
Sbjct: 892 PMTPTQPP 899
>gi|100913192 AMP-activated protein kinase gamma2 subunit isoform c
[Homo sapiens]
Length = 525
Score = 35.8 bits (81), Expect = 0.021
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 60 SQTYWSRGPLPPQRSTPMASPAR--------RGQFPACYAKSPSAAPRLGGFFRKRLGGS 111
S+ ++SRGP P+ S+PM++P R + FP Y +SP +PR F S
Sbjct: 29 SKGFFSRGP-QPRPSSPMSAPVRPKTSPGSPKTVFPFSYQESPPRSPRRMSFSGIFRSSS 87
Query: 112 EEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAP 146
+E+ ++P R+ LS P P
Sbjct: 88 KESSPNSNPATSPGGIRFFSRSRKTSGLSSSPSTP 122
>gi|33186925 AMP-activated protein kinase gamma2 subunit isoform a
[Homo sapiens]
Length = 569
Score = 35.8 bits (81), Expect = 0.021
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 60 SQTYWSRGPLPPQRSTPMASPAR--------RGQFPACYAKSPSAAPRLGGFFRKRLGGS 111
S+ ++SRGP P+ S+PM++P R + FP Y +SP +PR F S
Sbjct: 73 SKGFFSRGP-QPRPSSPMSAPVRPKTSPGSPKTVFPFSYQESPPRSPRRMSFSGIFRSSS 131
Query: 112 EEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAP 146
+E+ ++P R+ LS P P
Sbjct: 132 KESSPNSNPATSPGGIRFFSRSRKTSGLSSSPSTP 166
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 35.4 bits (80), Expect = 0.027
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 32/148 (21%)
Query: 10 LPQPGSPRPRPPPF-------AAP---YLAQAGR------SCVRRARDLYGSLRILPLPP 53
L +P P PRPPP AP +L++A R S + R P+PP
Sbjct: 783 LRKPSQPPPRPPPDYLRGGSPPAPLPAHLSRAARNSPGPGSQIERTESSRRPPPSRPIPP 842
Query: 54 TDCVVLSQTYWSRGPLPPQRSTPM-ASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSE 112
++SQ + SR P PPQ++ P P RR + PR GG R G+
Sbjct: 843 APNCIVSQDF-SR-PRPPQKALPANPVPGRR------------SLPRPGGASPLRPPGAG 888
Query: 113 EAEDGPESRSAPPWSHTPRSPRRIGVLS 140
+ P + AP + RS R G++S
Sbjct: 889 PQQSRPLAALAPKFPEY-RSQRAGGMIS 915
Score = 26.9 bits (58), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 7 QRSLPQPGSPRPRPPPFAAP 26
+RSLP+PG P PP A P
Sbjct: 870 RRSLPRPGGASPLRPPGAGP 889
>gi|19923949 kinesin family member 12 [Homo sapiens]
Length = 513
Score = 35.0 bits (79), Expect = 0.035
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 16 PRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPLPPQRST 75
P RPPP+A P + + R+ + R+L + + + S PLP +
Sbjct: 406 PSARPPPWAPPCSPGSAKCPRERSHSDWTQTRVL----AEMLTEEEVVPSAPPLPVR--P 459
Query: 76 PMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPESRSAPPWSHTPRSPRR 135
P SP RG A P+ A RL R ++G S RS PP S RSP +
Sbjct: 460 PKTSPGLRGG-----AGVPNLAQRLEA-LRDQIGSSLR-----RGRSQPPCSEGARSPGQ 508
Query: 136 I 136
+
Sbjct: 509 V 509
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 34.7 bits (78), Expect = 0.046
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 79 SPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDG-----PESRSAPPWSHTPRSP 133
SP R P A SPS A R G G +A G P+SR APP ++ R P
Sbjct: 2236 SPGRATSPPLAGAVSPSVAVRATGLSSTPTGDEAQAGRGLPGPDPQSRGAPPHTNPDRMP 2295
Query: 134 R 134
R
Sbjct: 2296 R 2296
Score = 28.9 bits (63), Expect = 2.5
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 13 PGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPLPPQ 72
P P+ P AP R+ + A + G R PP+ + T S P PP
Sbjct: 148 PEVDTPQGPGTGAPLRPGLPRTEAQPAAEELGFHRCFQEPPSSFTSTNYTSPSATPRPPA 207
Query: 73 RSTPMA---SPARRGQFPACYAKSPSAAP 98
P + SP + G +P A + P
Sbjct: 208 PGPPQSRGTSPLQPGSYPEYQASGADSWP 236
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 34.7 bits (78), Expect = 0.046
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 11 PQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPLP 70
P+PG P P PPP A+A R+ ++ + L S+ +P D S P
Sbjct: 291 PEPGPPAPLPPPGG----ARARRARLQHSSALTASVEEGGVPGEDP--------SSRPAT 338
Query: 71 PQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPESRSAP 124
P+ + P ++P R + P+ P+ P GG ++ E P AP
Sbjct: 339 PELAEPESAPTLRVEPPSPPEGPPNPGPD---------GGKQDGEAPPAGPCAP 383
>gi|239755429 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 34.3 bits (77), Expect = 0.060
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 50 PLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLG 109
PLPPT V RGPLP T +++ A RGQ ++P ++ G
Sbjct: 15 PLPPTSWTV-------RGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG------N 61
Query: 110 GSEEAEDGPESRSAPPWS-HTPRSPR 134
A P P W TPRSPR
Sbjct: 62 TVRHAAPSPRWSPTPWWPVCTPRSPR 87
>gi|239749885 PREDICTED: hypothetical protein XP_002347195 [Homo
sapiens]
Length = 104
Score = 34.3 bits (77), Expect = 0.060
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 50 PLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLG 109
PLPPT V RGPLP T +++ A RGQ ++P ++ G
Sbjct: 15 PLPPTSWTV-------RGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG------N 61
Query: 110 GSEEAEDGPESRSAPPWS-HTPRSPR 134
A P P W TPRSPR
Sbjct: 62 TVRHAAPSPRWSPTPWWPVCTPRSPR 87
>gi|239744187 PREDICTED: hypothetical protein XP_002343051 [Homo
sapiens]
Length = 104
Score = 34.3 bits (77), Expect = 0.060
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 50 PLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRKRLG 109
PLPPT V RGPLP T +++ A RGQ ++P ++ G
Sbjct: 15 PLPPTSWTV-------RGPLPSSGLTSVSTAAARGQALLRSRRTPGDVTQILG------N 61
Query: 110 GSEEAEDGPESRSAPPWS-HTPRSPR 134
A P P W TPRSPR
Sbjct: 62 TVRHAAPSPRWSPTPWWPVCTPRSPR 87
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 34.3 bits (77), Expect = 0.060
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 23/111 (20%)
Query: 5 VAQRSLPQP-----GSPRPRPPPFAA----------PYL--AQAGRSCVRRARDLYGSLR 47
V R+ P+P G P P PPP +A P + A + + G +
Sbjct: 17 VVARTPPEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPESPSGQVG 76
Query: 48 ILPLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAP 98
P PP + S+ SRGP PP A P RR P SP+A P
Sbjct: 77 PRPAPPQEESPSSEAK-SRGPTPPAMGPRDARPPRRSSQP-----SPTAVP 121
>gi|224465184 nuclear factor I/A isoform 4 [Homo sapiens]
Length = 554
Score = 33.5 bits (75), Expect = 0.10
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 10 LPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPL 69
LP P P P PPP A P LP+P T S + P
Sbjct: 477 LPTPMLPPPPPPPMARPVP--------------------LPVPDTKPPTTSTEGGAASPT 516
Query: 70 PPQRSTPMASPARR 83
P STP SPA R
Sbjct: 517 SPTYSTPSTSPANR 530
>gi|224465182 nuclear factor I/A isoform 3 [Homo sapiens]
Length = 501
Score = 33.5 bits (75), Expect = 0.10
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 10 LPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPL 69
LP P P P PPP A P LP+P T S + P
Sbjct: 424 LPTPMLPPPPPPPMARPVP--------------------LPVPDTKPPTTSTEGGAASPT 463
Query: 70 PPQRSTPMASPARR 83
P STP SPA R
Sbjct: 464 SPTYSTPSTSPANR 477
>gi|197927284 nuclear factor I/A isoform 1 [Homo sapiens]
Length = 509
Score = 33.5 bits (75), Expect = 0.10
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 20/74 (27%)
Query: 10 LPQPGSPRPRPPPFAAPYLAQAGRSCVRRARDLYGSLRILPLPPTDCVVLSQTYWSRGPL 69
LP P P P PPP A P LP+P T S + P
Sbjct: 432 LPTPMLPPPPPPPMARPVP--------------------LPVPDTKPPTTSTEGGAASPT 471
Query: 70 PPQRSTPMASPARR 83
P STP SPA R
Sbjct: 472 SPTYSTPSTSPANR 485
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.5 bits (75), Expect = 0.10
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 79 SPARRGQFPACYAKSPSAAPRLGGFFRKRLGGSEEAEDGPESRSAPPWSHTPRSPRRIGV 138
+P RR Q K+P+A PR GG + R G + A +SR S + PRR G
Sbjct: 406 NPRRRAQ------KAPAAKPRGGGSKKPRRRGPKAA----KSRGGKSRSGGGKKPRRRGQ 455
Query: 139 LSLWPGAPRATFARAAENLSRGPASVGGALGRRG 172
+ A +R + R AS G R G
Sbjct: 456 KARQKAAEAGAESRGDKKQGRQKASAAGTKSRGG 489
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.10
Identities = 41/125 (32%), Positives = 46/125 (36%), Gaps = 27/125 (21%)
Query: 47 RILPLPPTDCVVLSQTYWSRGPLPPQRSTPMASPARRGQFPACYAKSPSAAPRLGGFFRK 106
R LPLP ++L + PLPP S R G+ A A +P
Sbjct: 162 RPLPLP----LMLMLMLPTLQPLPPPGSARRPRRGRAGRGGA--APAPPT---------- 205
Query: 107 RLGGSEEAEDGPESRSAPPWSHTPRSPRRIGVLSLWPGAPRATFARAAENLSRGPASVGG 166
GS A GP S SA P SH P SP PG T R S G A G
Sbjct: 206 ---GSMRAGPGPSSPSAAPTSHPPPSP-------ACPGPEMETILRNPPARSPG-AGWGS 254
Query: 167 ALGRR 171
GRR
Sbjct: 255 GAGRR 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,851,748
Number of Sequences: 37866
Number of extensions: 595489
Number of successful extensions: 4628
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 4227
Number of HSP's gapped (non-prelim): 685
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.