Guide to the Human Genome
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Name: LOC100290593 Sequence: fasta or formatted (104aa) NCBI GI: 239749885
Description:

PREDICTED: hypothetical protein XP_002347195

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7          8           3
 C cysteine            1.0          1           1
 D aspartate           2.9          3           1
 E glutamate           1.0          1           1
 F phenylalanine       0.0          0           0
 G glycine             7.7          8           1
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine             7.7          8           2
 M methionine          1.9          2           1
 N asparagine          1.0          1           1
 P proline            18.3         19           2
 Q glutamine           2.9          3           1
 R arginine           13.5         14           2
 S serine             10.6         11           2
 T threonine           9.6         10           1
 V valine              6.7          7           1
 W tryptophan          5.8          6           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347195 
LOC100292347          1.000   PREDICTED: hypothetical protein 
LOC100289632          1.000   PREDICTED: hypothetical protein XP_002343051 
PSD                   0.079   pleckstrin and Sec7 domain containing 
NACA                  0.059   nascent polypeptide-associated complex alpha subuni...
FAM189A1              0.050   hypothetical protein LOC23359 
TCERG1                0.050   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.050   transcription elongation regulator 1 isoform 1 [Homo...
SOLH                  0.050   small optic lobes 
LOC100131778          0.045   PREDICTED: hypothetical protein 
LOC100131646          0.045   PREDICTED: hypothetical protein 
LOC100131778          0.045   PREDICTED: hypothetical protein 
LOC100131778          0.045   PREDICTED: hypothetical protein 
SNAPC2                0.045   small nuclear RNA activating complex, polypeptide 2, ...
SELV                  0.040   selenoprotein V 
SRRM1                 0.040   serine/arginine repetitive matrix 1 
ANKRD34A              0.035   ankyrin repeat domain 34 
IRAK1                 0.035   interleukin-1 receptor-associated kinase 1 isoform 3...
IRAK1                 0.035   interleukin-1 receptor-associated kinase 1 isoform 2...
IRAK1                 0.035   interleukin-1 receptor-associated kinase 1 isoform 1...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform a 
MUC2                  0.035   mucin 2 precursor 
LOC100294420          0.035   PREDICTED: similar to mucin 2 
DGKK                  0.035   diacylglycerol kinase kappa 
IGSF9                 0.035   immunoglobulin superfamily, member 9 isoform a [Hom...
IGSF9                 0.035   immunoglobulin superfamily, member 9 isoform b [Hom...
SHANK1                0.035   SH3 and multiple ankyrin repeat domains 1 
ANO8                  0.030   anoctamin 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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