Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131646 Sequence: fasta or formatted (181aa) NCBI GI: 239752818
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {134aa} PREDICTED: hypothetical protein
alt prot {134aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         24           2
 C cysteine            1.7          3           1
 D aspartate           2.2          4           1
 E glutamate           3.3          6           2
 F phenylalanine       2.8          5           2
 G glycine            10.5         19           2
 H histidine           0.6          1           1
 I isoleucine          1.1          2           1
 K lysine              1.1          2           1
 L leucine             8.3         15           1
 M methionine          1.1          2           1
 N asparagine          0.6          1           1
 P proline            14.9         27           3
 Q glutamine           3.3          6           1
 R arginine           13.8         25           2
 S serine             10.5         19           1
 T threonine           3.3          6           1
 V valine              3.3          6           2
 W tryptophan          2.2          4           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131646          0.361   PREDICTED: hypothetical protein 
LOC100131646          0.361   PREDICTED: hypothetical protein 
TBKBP1                0.054   TBK1 binding protein 1 
SYN3                  0.043   synapsin III isoform IIIg 
SYN3                  0.043   synapsin III isoform IIIa 
LOC440829             0.040   PREDICTED: transmembrane protein 46-like 
LOC645307             0.040   PREDICTED: hypothetical protein 
ATXN2                 0.037   ataxin 2 
COL4A4                0.037   alpha 4 type IV collagen precursor 
MLL4                  0.034   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100292934          0.034   PREDICTED: hypothetical protein 
LOC100287002          0.034   PREDICTED: hypothetical protein XP_002343745 
DACT3                 0.031   thymus expressed gene 3-like 
KDM6B                 0.031   lysine (K)-specific demethylase 6B 
PRKAG2                0.031   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG2                0.031   AMP-activated protein kinase gamma2 subunit isoform ...
ADAM19                0.028   ADAM metallopeptidase domain 19 preproprotein 
KIF12                 0.028   kinesin family member 12 
ZNF469                0.028   zinc finger protein 469 
C2orf55               0.028   hypothetical protein LOC343990 
LOC100292347          0.026   PREDICTED: hypothetical protein 
LOC100290593          0.026   PREDICTED: hypothetical protein XP_002347195 
LOC100289632          0.026   PREDICTED: hypothetical protein XP_002343051 
MAP7D1                0.026   MAP7 domain containing 1 
NFIA                  0.023   nuclear factor I/A isoform 4 
NFIA                  0.023   nuclear factor I/A isoform 3 
NFIA                  0.023   nuclear factor I/A isoform 1 
LOC100292370          0.023   PREDICTED: hypothetical protein 
LOC100291220          0.023   PREDICTED: hypothetical protein XP_002347633 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press