Guide to the Human Genome
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Name: C9orf131 Sequence: fasta or formatted (1031aa) NCBI GI: 94536864
Description:

hypothetical protein LOC138724 isoform D

Not currently referenced in the text

Other entries for this name:
alt prot {1044aa} hypothetical protein LOC138724 isoform B
alt prot {1006aa} hypothetical protein LOC138724 isoform C
alt prot {1079aa} hypothetical protein LOC138724 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         62           1
 C cysteine            2.2         23           1
 D aspartate           2.8         29           1
 E glutamate           7.2         74           5
 F phenylalanine       1.9         20           2
 G glycine             6.1         63           2
 H histidine           3.8         39           2
 I isoleucine          1.9         20           1
 K lysine              5.2         54           2
 L leucine             9.8        101           3
 M methionine          1.7         18           1
 N asparagine          2.1         22           1
 P proline            13.1        135           3
 Q glutamine           6.2         64           3
 R arginine            4.8         50           2
 S serine             12.9        133           3
 T threonine           4.0         41           2
 V valine              5.2         54           1
 W tryptophan          2.0         21           2
 Y tyrosine            0.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC138724 isoform D 
C9orf131              0.997   hypothetical protein LOC138724 isoform A 
C9orf131              0.970   hypothetical protein LOC138724 isoform C 
C9orf131              0.969   hypothetical protein LOC138724 isoform B 
MDC1                  0.017   mediator of DNA-damage checkpoint 1 
C9orf144B             0.013   hypothetical protein LOC259308 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.012   myeloid/lymphoid or mixed-lineage leukemia 2 
C9orf79               0.012   chromosome 9 open reading frame 79 
KIAA1217              0.011   sickle tail isoform 3 
KIAA1217              0.011   sickle tail isoform 2 
ZNF828                0.010   zinc finger protein 828 
FAM75A2               0.010   hypothetical protein LOC642265 
ZFHX2                 0.010   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.010   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.010   PREDICTED: zinc finger homeobox 2 
FAM75A1               0.010   hypothetical protein LOC647060 
SRCAP                 0.009   Snf2-related CBP activator protein 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
GLTSCR1               0.009   glioma tumor suppressor candidate region gene 1 [Ho...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
FAM75A4               0.008   PREDICTED: family with sequence similarity 75, memb...
FAM75A4               0.008   PREDICTED: family with sequence similarity 75, memb...
FAM75A7               0.008   hypothetical protein LOC26165 
CASKIN2               0.008   cask-interacting protein 2 isoform b 
CASKIN2               0.008   cask-interacting protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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