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Search of human proteins with 239752719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752719 PREDICTED: hypothetical protein [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752719 PREDICTED: hypothetical protein [Homo sapiens] 343 3e-95
gi|239753301 PREDICTED: hypothetical protein [Homo sapiens] 311 2e-85
gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo ... 243 4e-65
gi|226423905 splA/ryanodine receptor domain and SOCS box contain... 31 0.38
gi|226423903 splA/ryanodine receptor domain and SOCS box contain... 31 0.38
gi|14249178 splA/ryanodine receptor domain and SOCS box containi... 31 0.38
gi|8393264 delta-like 3 protein isoform 1 precursor [Homo sapiens] 30 0.66
gi|45243561 delta-like 3 protein isoform 2 precursor [Homo sapiens] 30 0.66
gi|68448528 mesothelin-like [Homo sapiens] 30 0.66
gi|239747649 PREDICTED: similar to Putative uncharacterized prot... 29 1.5
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 29 1.5
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 29 1.9
gi|8051586 ficolin 2 isoform b precursor [Homo sapiens] 29 1.9
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [... 28 2.5
gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo ... 28 3.3
gi|239748034 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo ... 28 3.3
gi|239741926 PREDICTED: hypothetical protein XP_002342353 [Homo ... 28 3.3
gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens] 28 4.3
gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens] 28 4.3
gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo ... 28 4.3
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 28 4.3
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 28 4.3
gi|51093874 proline rich 19 [Homo sapiens] 28 4.3
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 27 5.6
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 27 5.6
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 27 5.6
gi|239754552 PREDICTED: hypothetical protein [Homo sapiens] 27 5.6
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma... 27 5.6
gi|239749115 PREDICTED: hypothetical protein [Homo sapiens] 27 5.6
>gi|239752719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 343 bits (881), Expect = 3e-95
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MVNSKGQLRTHAQVHKWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWGL 60
MVNSKGQLRTHAQVHKWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWGL
Sbjct: 1 MVNSKGQLRTHAQVHKWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWGL 60
Query: 61 NISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQ 120
NISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQ
Sbjct: 61 NISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQ 120
Query: 121 PEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 158
PEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 121 PEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 158
>gi|239753301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 311 bits (796), Expect = 2e-85
Identities = 141/144 (97%), Positives = 142/144 (98%)
Query: 15 HKWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD 74
HKWQH WPKPPHSWAASWP EGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD
Sbjct: 48 HKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD 107
Query: 75 HGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ 134
HGPERGAGFLGAGL+SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ
Sbjct: 108 HGPERGAGFLGAGLKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ 167
Query: 135 LPEAGLTPSSPDRGAKSECCVHSW 158
LPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 168 LPEAGLTPSSPDRGAKSECCVHSW 191
>gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo
sapiens]
Length = 155
Score = 243 bits (621), Expect = 4e-65
Identities = 127/159 (79%), Positives = 129/159 (81%), Gaps = 5/159 (3%)
Query: 1 MVNSKGQLRTHAQVHKW-QHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWG 59
MV SKGQ RTHAQV A P A P + G + LLGLRTVGSGWG
Sbjct: 1 MVTSKGQPRTHAQVAACLAKASPLLGCQLAHGRP----EMQLGPTTQTLLGLRTVGSGWG 56
Query: 60 LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG 119
LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG
Sbjct: 57 LNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWG 116
Query: 120 QPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 158
QPEEE LWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 117 QPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
>gi|226423905 splA/ryanodine receptor domain and SOCS box containing
2 isoform 2 [Homo sapiens]
Length = 267
Score = 31.2 bits (69), Expect = 0.38
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 26 HSWAASWPTEGR------QCSSGLLP------KPLLGLRTVGSGWGLNISFGLLTQSMKQ 73
H+W SWP E R ++ L P LLG + WG +I G L K
Sbjct: 89 HAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNS--ESWGWDIGRGKLYHQSKG 146
Query: 74 DHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELG 110
P+ AG G LE +P+ L + +++ G LG
Sbjct: 147 PGAPQYPAGTQGEQLE--VPER--LLVVLDMEEGTLG 179
>gi|226423903 splA/ryanodine receptor domain and SOCS box containing
2 isoform 1 [Homo sapiens]
Length = 263
Score = 31.2 bits (69), Expect = 0.38
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 26 HSWAASWPTEGR------QCSSGLLP------KPLLGLRTVGSGWGLNISFGLLTQSMKQ 73
H+W SWP E R ++ L P LLG + WG +I G L K
Sbjct: 89 HAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNS--ESWGWDIGRGKLYHQSKG 146
Query: 74 DHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELG 110
P+ AG G LE +P+ L + +++ G LG
Sbjct: 147 PGAPQYPAGTQGEQLE--VPER--LLVVLDMEEGTLG 179
>gi|14249178 splA/ryanodine receptor domain and SOCS box containing
2 isoform 1 [Homo sapiens]
Length = 263
Score = 31.2 bits (69), Expect = 0.38
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 26 HSWAASWPTEGR------QCSSGLLP------KPLLGLRTVGSGWGLNISFGLLTQSMKQ 73
H+W SWP E R ++ L P LLG + WG +I G L K
Sbjct: 89 HAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNS--ESWGWDIGRGKLYHQSKG 146
Query: 74 DHGPERGAGFLGAGLESSLPQMGWALTLRELQMGELG 110
P+ AG G LE +P+ L + +++ G LG
Sbjct: 147 PGAPQYPAGTQGEQLE--VPER--LLVVLDMEEGTLG 179
>gi|8393264 delta-like 3 protein isoform 1 precursor [Homo sapiens]
Length = 618
Score = 30.4 bits (67), Expect = 0.66
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 43 LLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLR 102
LLP P LGL G + LL ++ H + G+ L E S+ + AL
Sbjct: 492 LLP-PALGLLVAAGVAGAAL---LLVHVRRRGHSQDAGSRLLAGTPEPSVHALPDALNNL 547
Query: 103 ELQMGELGAPQASGHWGQPEE 123
Q G P +S W +PE+
Sbjct: 548 RTQEGSGDGPSSSVDWNRPED 568
>gi|45243561 delta-like 3 protein isoform 2 precursor [Homo sapiens]
Length = 587
Score = 30.4 bits (67), Expect = 0.66
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 43 LLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTLR 102
LLP P LGL G + LL ++ H + G+ L E S+ + AL
Sbjct: 492 LLP-PALGLLVAAGVAGAAL---LLVHVRRRGHSQDAGSRLLAGTPEPSVHALPDALNNL 547
Query: 103 ELQMGELGAPQASGHWGQPEE 123
Q G P +S W +PE+
Sbjct: 548 RTQEGSGDGPSSSVDWNRPED 568
>gi|68448528 mesothelin-like [Homo sapiens]
Length = 1053
Score = 30.4 bits (67), Expect = 0.66
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 20 AWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGW 58
AW + H W W + SSGL P++G+ G W
Sbjct: 224 AWAQAVHRWPVLWGSRSSSMSSGLKQTPMVGV--TGPPW 260
>gi|239747649 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 237
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 36 GRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGA-GFLGAGLESSLPQ 94
G Q LP+P GL G + + L + + G R + G L A S PQ
Sbjct: 71 GPQLPXAKLPRPSSGLTVASPGSAPALRWHLQAPNGLRSVGSSRPSLGLLAASAGPSRPQ 130
Query: 95 MGWALTLRELQMG 107
+G + L E Q+G
Sbjct: 131 VGLEVGLEEQQVG 143
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 107 GELGAPQASGHWGQPEEEGLWDGLEL-GQLPEAGLTPSSPDRGAKSE 152
G G+P GH G+P E GL GQ E G S + G K E
Sbjct: 298 GAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEGSKGETGEKGE 344
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 28.9 bits (63), Expect = 1.9
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 104 LQMGELGAPQASGHWGQPEEEGLWDGL--ELGQLPEAGLTPSSPDRGAKSE 152
L +GE G P SG G+P + G+ GL G + EAG +RG K E
Sbjct: 2019 LALGERGPPGPSGLAGEPGKPGI-PGLPGRAGGVGEAGRPGERGERGEKGE 2068
>gi|8051586 ficolin 2 isoform b precursor [Homo sapiens]
Length = 275
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 78 ERGAGFLGAG-LESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 125
+R G LGA L S M WAL + GE G P G G P G
Sbjct: 4 DRAVGVLGAATLLLSFLGMAWALQAADTCPGERGPPGPPGKAGPPGPNG 52
>gi|115298645 mitogen-activated protein kinase kinase kinase 14
[Homo sapiens]
Length = 947
Score = 28.5 bits (62), Expect = 2.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 122 EEEGLWDGLELGQL-PEAGLTPSSPDRGA 149
EE G+W+ L L L P PSSP+R A
Sbjct: 735 EESGMWEPLPLSSLEPAPARNPSSPERKA 763
>gi|239750418 PREDICTED: hypothetical protein XP_002347389 [Homo
sapiens]
Length = 220
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 118 WGQPEEEGLWDGLELGQLPEAGL 140
W + +E W GLELG+ PE L
Sbjct: 6 WSRVNQENNWTGLELGKEPETEL 28
>gi|239748034 PREDICTED: hypothetical protein [Homo sapiens]
Length = 206
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 24 PPHSWAASWPTEGRQCSSGLLPKPLL---GLRTVGSGWGLNISFGLLTQSMKQDHGPERG 80
PP ++ S+P+ R + P + L+ G +S G ++ Q GP +G
Sbjct: 43 PPWAFGPSFPSSSRSAGGSVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKG 102
Query: 81 AGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLW 127
AG G L+ +L A + R Q + G P + G E G W
Sbjct: 103 AGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSP--CGASLEAGGW 147
>gi|239744720 PREDICTED: hypothetical protein XP_002343252 [Homo
sapiens]
Length = 220
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 118 WGQPEEEGLWDGLELGQLPEAGL 140
W + +E W GLELG+ PE L
Sbjct: 6 WSRVNQENNWTGLELGKEPETEL 28
>gi|239741926 PREDICTED: hypothetical protein XP_002342353 [Homo
sapiens]
Length = 206
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 24 PPHSWAASWPTEGRQCSSGLLPKPLL---GLRTVGSGWGLNISFGLLTQSMKQDHGPERG 80
PP ++ S+P+ R + P + L+ G +S G ++ Q GP +G
Sbjct: 43 PPWAFGPSFPSSSRSAGGSVAPHLRMEGPSLQVCGRTVLRLLSSGAVSGVTLQTLGPLKG 102
Query: 81 AGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLW 127
AG G L+ +L A + R Q + G P + G E G W
Sbjct: 103 AGRWGRALQPALRGGHHASSQRLCQTLDGGHPDSP--CGASLEAGGW 147
>gi|239754314 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 75 HGPERGAGFLGAGLESSLPQM--GWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLE 131
HG R G G+ + P + ++ T++ + EL + Q EGLW GLE
Sbjct: 39 HGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLE 97
>gi|239748870 PREDICTED: similar to hCG2002168 [Homo sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 75 HGPERGAGFLGAGLESSLPQM--GWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLE 131
HG R G G+ + P + ++ T++ + EL + Q EGLW GLE
Sbjct: 39 HGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLE 97
>gi|239742899 PREDICTED: hypothetical protein XP_002342644 [Homo
sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 4.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 75 HGPERGAGFLGAGLESSLPQM--GWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLE 131
HG R G G+ + P + ++ T++ + EL + Q EGLW GLE
Sbjct: 39 HGAVRLKGLTGSSPHRTPPHLKPSFSATIQGTRSPELSKTHSGRKPSQAVTEGLWSGLE 97
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 16 KWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRT 53
K H P+P H A PT+ R C L P+LGL T
Sbjct: 8 KCLHRGPQPSHWAAGDGPTQER-CGPRSLGSPVLGLDT 44
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 16 KWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRT 53
K H P+P H A PT+ R C L P+LGL T
Sbjct: 8 KCLHRGPQPSHWAAGDGPTQER-CGPRSLGSPVLGLDT 44
>gi|51093874 proline rich 19 [Homo sapiens]
Length = 356
Score = 27.7 bits (60), Expect = 4.3
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 17 WQHAWPKPPHSWAASWPTEGRQCSSGLLPK 46
W A P PP W P Q SS LLP+
Sbjct: 290 WLVATPPPPRPWGVGLPQPLPQPSSPLLPR 319
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 100 TLRELQMGELGAPQASGHWGQPE-----EEGLWDGLELGQLP 136
TL ++GELG P +W QP+ GL +GL LP
Sbjct: 3509 TLALQRLGELGPPSPGLNWEQPQAARLSRTGLVEGLRKRLLP 3550
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 27.3 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 100 TLRELQMGELGAPQASGHWGQPE-----EEGLWDGLELGQLP 136
TL ++GELG P +W QP+ GL +GL LP
Sbjct: 3510 TLALQRLGELGPPSPGLNWEQPQAARLSRTGLVEGLRKRLLP 3551
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 27.3 bits (59), Expect = 5.6
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 107 GELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECC 154
G+L P+ GH P+ +W G E G + R + CC
Sbjct: 4334 GQLQFPENMGHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCC 4381
>gi|239754552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 114
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 19 HAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVG 55
H WP WA++ + G Q ++G P L R G
Sbjct: 3 HGWPSLSAHWASARASHGSQRTTGPKPAELAPARATG 39
>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 27.3 bits (59), Expect = 5.6
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 107 GELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECC 154
G+L P+ GH P+ +W G E G + R + CC
Sbjct: 4334 GQLQFPENMGHTNLPDSRDVWIGDERGGHSAVRKNSAYSHRASLGSCC 4381
>gi|239749115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 337
Score = 27.3 bits (59), Expect = 5.6
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 19 HAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVG 55
H WP WA++ + G Q ++G P L R G
Sbjct: 3 HGWPSLSAHWASARASHGSQRTTGPKPAELAPARATG 39
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,927,950
Number of Sequences: 37866
Number of extensions: 413128
Number of successful extensions: 988
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 56
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.