Guide to the Human Genome
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Name: LOC100129619 Sequence: fasta or formatted (337aa) NCBI GI: 239749115
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {114aa} PREDICTED: hypothetical protein
alt prot {114aa} PREDICTED: hypothetical protein
alt prot {114aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         45           3
 C cysteine            2.4          8           1
 D aspartate           2.1          7           1
 E glutamate           2.4          8           2
 F phenylalanine       1.2          4           1
 G glycine            10.7         36           2
 H histidine           3.0         10           1
 I isoleucine          1.5          5           1
 K lysine              4.7         16           2
 L leucine             9.2         31           4
 M methionine          1.2          4           1
 N asparagine          1.5          5           1
 P proline             8.3         28           2
 Q glutamine           3.9         13           1
 R arginine            9.2         31           2
 S serine             10.7         36           2
 T threonine           6.5         22           2
 V valine              5.3         18           1
 W tryptophan          2.4          8           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129619          0.314   PREDICTED: hypothetical protein 
LOC100129619          0.314   PREDICTED: hypothetical protein 
LOC100129619          0.314   PREDICTED: hypothetical protein 
LOC100292798          0.267   PREDICTED: hypothetical protein 
LOC100287349          0.267   PREDICTED: hypothetical protein XP_002342760 
LOC100287349          0.267   PREDICTED: hypothetical protein 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
LOC100292172          0.023   PREDICTED: hypothetical protein 
LOC100289763          0.023   PREDICTED: hypothetical protein XP_002347867 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
LOC100289681          0.023   PREDICTED: hypothetical protein XP_002343623 
LOC100291634          0.023   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.023   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.023   PREDICTED: hypothetical protein 
DTX1                  0.023   deltex homolog 1 
LOC731551             0.021   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.021   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC728317             0.020   PREDICTED: hypothetical protein 
LOC728317             0.020   PREDICTED: hypothetical protein 
LOC728307             0.020   PREDICTED: hypothetical protein 
USP42                 0.020   ubiquitin specific peptidase 42 
C2orf71               0.018   hypothetical protein LOC388939 
LOC645321             0.018   PREDICTED: hypothetical protein 
LOC645321             0.018   PREDICTED: hypothetical protein 
LOC100293375          0.018   PREDICTED: hypothetical protein 
LOC100291220          0.018   PREDICTED: hypothetical protein XP_002347633 
LOC100287224          0.018   PREDICTED: hypothetical protein XP_002343483 
CXorf67               0.018   hypothetical protein LOC340602 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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