Guide to the Human Genome
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Name: LOC100287869 Sequence: fasta or formatted (127aa) NCBI GI: 239748870
Description:

PREDICTED: similar to hCG2002168

Not currently referenced in the text

Other entries for this name:
alt mRNA {127aa} PREDICTED: hypothetical protein XP_002342644
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          6           1
 C cysteine            1.6          2           1
 D aspartate           0.8          1           1
 E glutamate           5.5          7           1
 F phenylalanine       3.9          5           1
 G glycine            11.0         14           2
 H histidine           5.5          7           1
 I isoleucine          0.8          1           1
 K lysine              5.5          7           1
 L leucine            10.2         13           1
 M methionine          1.6          2           1
 N asparagine          0.0          0           0
 P proline             9.4         12           2
 Q glutamine           3.9          5           1
 R arginine            7.1          9           1
 S serine             12.6         16           2
 T threonine           7.9         10           1
 V valine              7.1          9           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2002168 
LOC100293760          1.000   PREDICTED: similar to hCG2002168 
LOC100287869          1.000   PREDICTED: hypothetical protein XP_002342644 
SPHKAP                0.051   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.051   sphingosine kinase type 1-interacting protein isofo...
NAP5                  0.042   Nck-associated protein 5 isoform 1 
ARHGAP17              0.030   nadrin isoform 1 
ARHGAP17              0.030   nadrin isoform 2 
IRF7                  0.021   interferon regulatory factor 7 isoform d 
IRF7                  0.021   interferon regulatory factor 7 isoform a 
AFAP1L1               0.017   actin filament associated protein 1-like 1 isoform ...
AFAP1L1               0.017   actin filament associated protein 1-like 1 isoform 1...
GAB3                  0.017   Gab3 protein isoform 1 
GAB3                  0.017   Gab3 protein isoform 2 
C20orf151             0.017   hypothetical protein LOC140893 
EGR1                  0.017   early growth response 1 
KIAA1211              0.017   hypothetical protein LOC57482 
MAST4                 0.017   microtubule associated serine/threonine kinase fami...
LOC100133408          0.013   PREDICTED: similar to mucin 
DIP2A                 0.013   disco-interacting protein 2A isoform g 
DIP2A                 0.013   disco-interacting protein 2A isoform a 
LOC389043             0.013   PREDICTED: hypothetical protein LOC389043 
LOC389043             0.013   PREDICTED: hypothetical protein LOC389043 
DIP2A                 0.013   disco-interacting protein 2A isoform e 
DIP2A                 0.013   disco-interacting protein 2A isoform d 
DIP2A                 0.013   disco-interacting protein 2A isoform c 
DIP2A                 0.013   disco-interacting protein 2A isoform b 
SYN3                  0.013   synapsin III isoform IIIg 
SYN3                  0.013   synapsin III isoform IIIa 
RTN2                  0.013   reticulon 2 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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