Guide to the Human Genome
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Name: LOC100288928 Sequence: fasta or formatted (206aa) NCBI GI: 239748034
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {206aa} PREDICTED: hypothetical protein XP_002342353
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         20           1
 C cysteine            3.9          8           1
 D aspartate           1.5          3           1
 E glutamate           4.4          9           2
 F phenylalanine       1.5          3           1
 G glycine            18.4         38           4
 H histidine           1.9          4           2
 I isoleucine          0.0          0           0
 K lysine              1.0          2           1
 L leucine            13.6         28           3
 M methionine          1.0          2           1
 N asparagine          0.0          0           0
 P proline            10.2         21           2
 Q glutamine           2.9          6           1
 R arginine            7.3         15           2
 S serine             10.7         22           3
 T threonine           3.9          8           1
 V valine              4.9         10           1
 W tryptophan          3.4          7           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288928          1.000   PREDICTED: hypothetical protein XP_002342353 
EP400                 0.034   E1A binding protein p400 
LOC100288583          0.029   PREDICTED: hypothetical protein XP_002343504 
CNOT3                 0.022   CCR4-NOT transcription complex, subunit 3 
LOC100130600          0.019   PREDICTED: similar to hCG2014367 
LOC100291533          0.019   PREDICTED: hypothetical protein XP_002347080 
LOC651986             0.019   PREDICTED: similar to forkhead box L2 
LOC100288002          0.019   PREDICTED: hypothetical protein XP_002342946 
LOC100288524          0.019   PREDICTED: hypothetical protein XP_002342748 
SNX19                 0.019   sorting nexin 19 
ADRA1D                0.017   alpha-1D-adrenergic receptor 
TRIOBP                0.017   TRIO and F-actin binding protein isoform 6 
UBQLN3                0.017   ubiquilin 3 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
ZC3H3                 0.017   zinc finger CCCH-type containing 3 
YLPM1                 0.017   YLP motif containing 1 
LOC100288667          0.015   PREDICTED: hypothetical protein XP_002344293 
KDM6B                 0.015   lysine (K)-specific demethylase 6B 
PRR14                 0.015   proline rich 14 
LOC100131831          0.015   PREDICTED: hypothetical protein 
LOC100292287          0.015   PREDICTED: hypothetical protein 
LOC100131831          0.015   PREDICTED: hypothetical protein 
LOC100289576          0.015   PREDICTED: hypothetical protein 
LOC100130600          0.015   PREDICTED: similar to hCG2014367 
LOC100131831          0.015   PREDICTED: hypothetical protein 
LOC100289576          0.015   PREDICTED: hypothetical protein XP_002343622 
LOC100130600          0.015   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.015   PREDICTED: similar to hCG2014367 
UTF1                  0.015   undifferentiated embryonic cell transcription factor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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