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Search of human proteins with 239752657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752657 PREDICTED: hypothetical protein [Homo sapiens] 343 5e-95
gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo ... 340 4e-94
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ... 178 2e-45
gi|119220598 apolipoprotein B48 receptor [Homo sapiens] 36 0.018
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens] 35 0.040
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ... 35 0.040
gi|24497589 aristaless related homeobox [Homo sapiens] 33 0.15
gi|4507205 serum response factor (c-fos serum response element-b... 32 0.26
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 32 0.33
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 32 0.33
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 32 0.33
gi|134304838 eukaryotic translation initiation factor 2-alpha ki... 31 0.57
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 31 0.57
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 31 0.57
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 30 0.75
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 30 0.97
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ... 30 1.3
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa... 29 1.7
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 29 1.7
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 29 1.7
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 29 1.7
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 29 2.2
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 29 2.2
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 29 2.2
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 29 2.2
gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens] 29 2.2
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 29 2.2
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 29 2.2
gi|4585643 zinc finger protein 264 [Homo sapiens] 28 2.8
gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens] 28 2.8
>gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 168
Score = 343 bits (879), Expect = 5e-95
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG
Sbjct: 1 MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
Query: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA
Sbjct: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
Query: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
sapiens]
Length = 168
Score = 340 bits (871), Expect = 4e-94
Identities = 167/168 (99%), Positives = 167/168 (99%)
Query: 1 MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
MLPPSPW RGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG
Sbjct: 1 MLPPSPWERGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAG 60
Query: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA
Sbjct: 61 ACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVA 120
Query: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 121 RRAPGGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
sapiens]
Length = 152
Score = 178 bits (451), Expect = 2e-45
Identities = 90/104 (86%), Positives = 94/104 (90%)
Query: 65 WSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 124
W+ + +G +LLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP
Sbjct: 49 WAPGRSGRAKGPRGRRLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAP 108
Query: 125 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 168
GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ
Sbjct: 109 GGRLRVGFGDRQVEDAAFVQATVMVVQVAGVGALVGDLQRLDTQ 152
>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
Length = 1088
Score = 35.8 bits (81), Expect = 0.018
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 7 WGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
WG G + +S +QA+ Q+SG G+T + P + +GAC S
Sbjct: 101 WGWG-DGSSHGSQAERQDSGA------GETAKAARCQEPSAHLEARKKSKAGSGACQDRS 153
Query: 67 QQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQ----CGASFTWAWGAAV---AGAV 119
Q +E+Q EE + ++ ++ V AR+ GA W W AGAV
Sbjct: 154 GQAQERQESHEQEVNREERLRSWEQEEEEEEVRAREPGMARGAESEWTWHGETEGKAGAV 213
Query: 120 ARRAPGGRLRVGFGDRQVE 138
+A G + G R+ +
Sbjct: 214 GPKAAGDNREMEQGVREAD 232
>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.040
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 QTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRG 75
Q P +D + P V G PG G HR QQ + +QRG
Sbjct: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG 146
>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.040
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 QTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRG 75
Q P +D + P V G PG G HR QQ + +QRG
Sbjct: 109 QEPARDPSILRLPRVVGVPGPRGRRHRGEQQQQREQRG 146
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 32.7 bits (73), Expect = 0.15
Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 32/153 (20%)
Query: 6 PWGRGVEAASAYAQAKFQES---------GTSRWKGVGDTGQ--TPPQDS-------PGI 47
P G G AA+A A A ++ SR K + G PP + G+
Sbjct: 139 PDGAGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPGGV 198
Query: 48 SEPE----VAGAPGLAGACH--RWSQQDEEQ-----QRGQHVAQLLEEVGSALGDDDIDD 96
+ PE VAG PG A A ++ DEE+ + +LLE+ L +DD
Sbjct: 199 THPEERLGVAGGPGSAPAAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDARA 258
Query: 97 VVAA-RQCGASFTWAWGAAVAGAVARRAPGGRL 128
++ R+C + T A AA A AVA GG L
Sbjct: 259 LLKEPRRCPVAATGAVAAAAAAAVA--TEGGEL 289
>gi|4507205 serum response factor (c-fos serum response
element-binding transcription factor) [Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 0.26
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 1 MLPPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDT-----GQTPPQDS---PGISEPEV 52
MLP + + T R G G T G+ P + PG E E
Sbjct: 1 MLPTQAGAAAALGRGSALGGSLNRTPTGRPGGGGGTRGANGGRVPGNGAGLGPGRLEREA 60
Query: 53 AGAPGL-----AGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASF 107
A A AGA + S+ D E + + + +L + +I VV + A+
Sbjct: 61 AAAAATTPAPTAGALYSGSEGDSESGEEEELGAERRGLKRSLSEMEIGMVVGGPEASAAA 120
Query: 108 TWAWGAAVAGAVARRAPGGRLR 129
T +G V+GAV+ PG + R
Sbjct: 121 TGGYG-PVSGAVSGAKPGKKTR 141
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 0.33
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 7 WGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
W E A+ + + ++ +RW+ G GQ Q P+ A +A H +
Sbjct: 315 WREAQEVAAGAQEQRVAQASLARWRSCGQQGQEDGQQKKA-RAPQAFPAWPVAPGMHHEA 373
Query: 67 QQDEEQQRGQHVAQ 80
QQ + G AQ
Sbjct: 374 QQQAGESAGAQAAQ 387
>gi|134304838 eukaryotic translation initiation factor 2-alpha
kinase 3 [Homo sapiens]
Length = 1116
Score = 30.8 bits (68), Expect = 0.57
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 44 SPGISEPEVAG----APGLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVA 99
S +S+PEV G P L GA +W Q E + + L E GDD + +V
Sbjct: 139 SSSLSKPEVFGNKMIIPSLDGALFQWDQDRESMETVPFTVESLLESSYKFGDDVV--LVG 196
Query: 100 ARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGD--RQVEDAAFVQATVMVVQVAG 154
G S T +A +G V R D Q ED +Q T V+ G
Sbjct: 197 ----GKSLTTYGLSAYSGKVRYICSALGCRQWDSDEMEQEEDILLLQRTQKTVRAVG 249
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.8 bits (68), Expect = 0.57
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQ 76
G G+ PQ PG+ +P + G PG GA + E Q+G+
Sbjct: 144 GIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE 186
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.8 bits (68), Expect = 0.57
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQ 76
G G+ PQ PG+ +P + G PG GA + E Q+G+
Sbjct: 144 GIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGE 186
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 30.4 bits (67), Expect = 0.75
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 10/108 (9%)
Query: 30 WKGVGDTGQTPPQDSPGISE---PEVAGAPGLAGACHRWSQQDEEQQRGQHVAQLLEEVG 86
W G G+ P +PGI + E GAP L C W+ + + G+ + G
Sbjct: 3 WSGGKRAGRDPSPSAPGIGQVRNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSG 62
Query: 87 SALGDDDIDDVVAARQCGASFTWAWGAAVAGAVARRAPGGRLRVGFGD 134
+ + S W + R PGG R GFG+
Sbjct: 63 RRRASGRLG------RSAVSSGVLWTDSPEAGPGRIRPGGVER-GFGE 103
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 30.0 bits (66), Expect = 0.97
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 24 ESGTSRWKGVGDTGQTPPQDSPGISEPEVAG---APGLAGACHRWSQQDEEQQRGQHVAQ 80
+ G GDTGQ P +DS +P + APG Q+D E+ G A
Sbjct: 627 KGGPPPGNAAGDTGQ-PAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAAS 685
Query: 81 LLEEVGSA 88
LEE G A
Sbjct: 686 QLEEAGRA 693
>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
sapiens]
Length = 101
Score = 29.6 bits (65), Expect = 1.3
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 44 SPGISEPEVAGAPGLAGACH-----RWSQQDEEQQRGQHVAQLLEEVGSALGDDD 93
+PG+ P +A AP L ACH RW+ + RG A L + + LG D
Sbjct: 30 APGVEWPRLAAAPAL--ACHRRPRWRWTGRHLAALRGLGPAGALRRLRTRLGHQD 82
>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 19 QAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWS 66
QA Q SG + + +T +PP S E VA AP H+W+
Sbjct: 235 QALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQWA 282
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 29.3 bits (64), Expect = 1.7
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 35/130 (26%)
Query: 3 PPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTP-PQDSPGISE-----PEVAGAP 56
PPS ++S++AQ +F G G G TP P +P +++ G
Sbjct: 252 PPSSSASASSSSSSFAQQRFGAMGGGGPSAAG--GGTPQPTATPTLNQLLTSPSSARGYQ 309
Query: 57 GLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVA 116
G G + QD G+ G D+ A QC WGAA A
Sbjct: 310 GYPGGDYSGGPQDG---------------GAGKGPADM-----ASQC-------WGAAAA 342
Query: 117 GAVARRAPGG 126
A A A GG
Sbjct: 343 AAAAAAASGG 352
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 29.3 bits (64), Expect = 1.7
Identities = 35/130 (26%), Positives = 47/130 (36%), Gaps = 35/130 (26%)
Query: 3 PPSPWGRGVEAASAYAQAKFQESGTSRWKGVGDTGQTP-PQDSPGISE-----PEVAGAP 56
PPS ++S++AQ +F G G G TP P +P +++ G
Sbjct: 252 PPSSSASASSSSSSFAQQRFGAMGGGGPSAAG--GGTPQPTATPTLNQLLTSPSSARGYQ 309
Query: 57 GLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALGDDDIDDVVAARQCGASFTWAWGAAVA 116
G G + QD G+ G D+ A QC WGAA A
Sbjct: 310 GYPGGDYSGGPQDG---------------GAGKGPADM-----ASQC-------WGAAAA 342
Query: 117 GAVARRAPGG 126
A A A GG
Sbjct: 343 AAAAAAASGG 352
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 29.3 bits (64), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 34 GDTGQTPPQDSPGI-SEPEVAGAPGLAGACHRWSQQDEEQQRG 75
G+ G PQ PG+ P GAPGL G + E+ +RG
Sbjct: 563 GEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERG 605
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAG 60
GD G+ P PG+ P GAPG+AG
Sbjct: 1153 GDKGENGPPGPPGLQGP--VGAPGIAG 1177
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAG 60
GD G+ P PG+ P GAPG+AG
Sbjct: 1102 GDKGENGPPGPPGLQGP--VGAPGIAG 1126
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 34 GDTGQTPPQDSPGISEPEVAGAPGLAG 60
GD G+ P PG+ P GAPG+AG
Sbjct: 1141 GDKGENGPPGPPGLQGP--VGAPGIAG 1165
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 28.9 bits (63), Expect = 2.2
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 33 VGDTGQTPPQD--SPGISEPEVAGAPGLAGACHRWSQQDEEQQRGQHVAQLLEEVGSALG 90
+GD G P D +PG E GA A A SQ+DEE++ +L EE A
Sbjct: 1643 LGDAGDPGPPDAAAPGPRE----GAAAAAAAAGESSQEDEEEE-----LELPEE--EAED 1691
Query: 91 DDDIDD 96
D+D DD
Sbjct: 1692 DEDEDD 1697
>gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens]
Length = 860
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 23 QESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGL 58
Q+ G W G G + P SPG S + +PGL
Sbjct: 70 QDLGRQAWAGAGFEAENGPTPSPGRSPLDSQASPGL 105
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 33 VGDTGQTPPQDSPGISEPEVAGAPGLAGA 61
+G G PQ PG PE G PG AGA
Sbjct: 243 MGPIGPPGPQGPPGERGPEGIGKPGAAGA 271
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 28.9 bits (63), Expect = 2.2
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 8 GRGVEAASAYAQAKF------QESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGA 61
GR VE + +++ + GT R G G+TPPQ G G+ A
Sbjct: 58 GRSVEKENVAVESEKNLGPSRRSPGTPRPPGASKGGRTPPQQ---------GGRAGMGRA 108
Query: 62 CHRWSQQDEEQQRG 75
W EQ RG
Sbjct: 109 SRSWEGSPGEQPRG 122
>gi|4585643 zinc finger protein 264 [Homo sapiens]
Length = 627
Score = 28.5 bits (62), Expect = 2.8
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 9 RGVEAASAYAQAKFQESGTSRWKGVGDTGQTPPQDSPGISEPEVAGAPGLAGACHRWSQQ 68
+G S QA+ Q+ + +G G P + SPG PE G G C R Q+
Sbjct: 115 QGNSVDSQLGQAEDQDGLSEMQEGHFRPGIDPQEKSPGKMSPECDGLGTADGVCSRIGQE 174
>gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 113 AAVAGAVARRAPGGRLRVGFGDR 135
A +AG ++R++PG ++ V GDR
Sbjct: 84 AVIAGVLSRKSPGDKILVNMGDR 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,061,524
Number of Sequences: 37866
Number of extensions: 334192
Number of successful extensions: 1584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1544
Number of HSP's gapped (non-prelim): 80
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.