Guide to the Human Genome
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Name: C1orf167 Sequence: fasta or formatted (697aa) NCBI GI: 239752697
Description:

PREDICTED: chromosome 1 open reading frame 167

Not currently referenced in the text

Other entries for this name:
alt prot {697aa} PREDICTED: hypothetical protein LOC284498
alt mRNA {697aa} PREDICTED: chromosome 1 open reading frame 167
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         86           3
 C cysteine            3.2         22           2
 D aspartate           1.7         12           1
 E glutamate           3.9         27           2
 F phenylalanine       1.9         13           1
 G glycine             9.3         65           2
 H histidine           2.7         19           2
 I isoleucine          0.9          6           1
 K lysine              2.0         14           2
 L leucine             9.5         66           3
 M methionine          0.7          5           1
 N asparagine          0.4          3           1
 P proline             7.6         53           2
 Q glutamine          11.5         80           3
 R arginine            9.9         69           3
 S serine              7.3         51           3
 T threonine           4.2         29           1
 V valine              4.9         34           2
 W tryptophan          5.6         39           2
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: chromosome 1 open reading frame 167 [Hom... 
C1orf167              1.000   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.998   PREDICTED: hypothetical protein LOC284498 
MED15                 0.011   mediator complex subunit 15 isoform a 
MED15                 0.011   mediator complex subunit 15 isoform b 
MAML2                 0.010   mastermind-like 2 
ALPK3                 0.010   alpha-kinase 3 
C1orf229              0.010   hypothetical protein LOC388759 
LOC729575             0.008   PREDICTED: hypothetical protein 
LOC100288110          0.008   PREDICTED: hypothetical protein 
LOC100288110          0.008   PREDICTED: hypothetical protein XP_002343007 
LOC100293644          0.008   PREDICTED: hypothetical protein 
LOC100287563          0.008   PREDICTED: hypothetical protein 
LOC100287563          0.008   PREDICTED: hypothetical protein XP_002343733 
ZNF628                0.008   zinc finger protein 628 
CD300LG               0.008   CD300 molecule-like family member g 
TBC1D10B              0.008   TBC1 domain family, member 10B 
KLHDC7A               0.007   kelch domain containing 7A 
AHDC1                 0.007   AT hook, DNA binding motif, containing 1 
LOC100294438          0.006   PREDICTED: hypothetical protein 
HMGXB3                0.006   HMG box domain containing 3 
LOC100292562          0.006   PREDICTED: hypothetical protein 
LOC100290372          0.006   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.006   PREDICTED: hypothetical protein XP_002342652 
LOC100289324          0.006   PREDICTED: hypothetical protein XP_002342157 
LOC100286941          0.006   PREDICTED: hypothetical protein XP_002342159 
FOXG1                 0.006   forkhead box G1 
DMRTA1                0.006   DMRT-like family A1 
COL1A2                0.006   alpha 2 type I collagen 
LOC100287981          0.006   PREDICTED: hypothetical protein XP_002344484 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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