Guide to the Human Genome
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Name: SH3TC1 Sequence: fasta or formatted (1336aa) NCBI GI: 145386551
Description:

SH3 domain and tetratricopeptide repeats 1

Referenced in:

Tetratricopeptide Domains
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4        152           3
 C cysteine            2.2         30           1
 D aspartate           4.0         54           2
 E glutamate           7.5        100           4
 F phenylalanine       3.4         45           2
 G glycine             6.8         91           3
 H histidine           2.9         39           2
 I isoleucine          2.5         34           2
 K lysine              3.1         42           2
 L leucine            14.4        193           4
 M methionine          1.5         20           1
 N asparagine          1.9         26           1
 P proline             5.8         78           3
 Q glutamine           5.2         69           2
 R arginine            6.4         85           2
 S serine              6.7         89           2
 T threonine           3.7         49           2
 V valine              6.4         86           2
 W tryptophan          1.1         15           1
 Y tyrosine            2.9         39           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 domain and tetratricopeptide repeats 1 
SH3TC2                0.252   SH3 domain and tetratricopeptide repeats 2 
TTC28                 0.021   tetratricopeptide repeat domain 28 
GPSM1                 0.011   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM1                 0.011   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM2                 0.009   LGN protein 
GRAP                  0.005   GRB2-related adaptor protein 
MLL                   0.005   myeloid/lymphoid or mixed-lineage leukemia protein [...
DNMBP                 0.005   dynamin binding protein 
HPX-2                 0.005   PREDICTED: similar to double homeobox, 4 
AKAP12                0.005   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.005   A kinase (PRKA) anchor protein 12 isoform 2 
SAMD1                 0.004   sterile alpha motif domain containing 1 
MAP3K11               0.004   mitogen-activated protein kinase kinase kinase 11 [Ho...
VAV3                  0.004   vav 3 guanine nucleotide exchange factor isoform 2 ...
SRP68                 0.004   signal recognition particle 68kDa 
VAV3                  0.004   vav 3 guanine nucleotide exchange factor isoform 1 ...
MLL2                  0.003   myeloid/lymphoid or mixed-lineage leukemia 2 
MAP3K10               0.003   mitogen-activated protein kinase kinase kinase 10 [H...
TTC23L                0.003   tetratricopeptide repeat domain 23-like 
OGFR                  0.003   opioid growth factor receptor 
ART3                  0.003   ADP-ribosyltransferase 3 isoform c 
ART3                  0.003   ADP-ribosyltransferase 3 isoform a 
ART3                  0.003   ADP-ribosyltransferase 3 isoform b 
SSPO                  0.003   SCO-spondin 
PEX5                  0.003   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.003   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.003   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.003   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.003   peroxisomal biogenesis factor 5 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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