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Search of human proteins with 239752618
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752618 PREDICTED: similar to promyelocytic leukemia
protein [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752618 PREDICTED: similar to promyelocytic leukemia protei... 295 1e-80
gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens] 291 1e-79
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 212 8e-56
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 211 1e-55
gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens] 210 4e-55
gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens] 210 4e-55
gi|15451779 promyelocytic leukemia protein isoform 10 [Homo sapi... 209 7e-55
gi|109637788 promyelocytic leukemia protein isoform 5 [Homo sapi... 177 4e-45
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 36 0.013
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 36 0.013
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 35 0.029
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 34 0.038
gi|215422388 death-domain associated protein isoform a [Homo sap... 34 0.038
gi|215422366 death-domain associated protein isoform b [Homo sap... 34 0.038
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 34 0.038
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 34 0.038
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens] 32 0.15
gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens] 32 0.15
gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens] 32 0.15
gi|189181750 human immunodeficiency virus type I enhancer bindin... 32 0.15
gi|116089331 human immunodeficiency virus type I enhancer bindin... 32 0.15
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 32 0.15
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 0.19
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 32 0.19
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 32 0.19
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 32 0.19
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 32 0.19
gi|65288071 tensin 3 [Homo sapiens] 32 0.19
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 32 0.19
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 32 0.19
>gi|239752618 PREDICTED: similar to promyelocytic leukemia protein
[Homo sapiens]
Length = 147
Score = 295 bits (754), Expect = 1e-80
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MQDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDG 60
MQDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDG
Sbjct: 1 MQDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDG 60
Query: 61 PPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASP 120
PPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASP
Sbjct: 61 PPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASP 120
Query: 121 HFRSQGAQPQQVTLRLALRLGNFPVRH 147
HFRSQGAQPQQVTLRLALRLGNFPVRH
Sbjct: 121 HFRSQGAQPQQVTLRLALRLGNFPVRH 147
>gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens]
Length = 611
Score = 291 bits (746), Expect = 1e-79
Identities = 145/146 (99%), Positives = 146/146 (100%)
Query: 2 QDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 61
+DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP
Sbjct: 466 EDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 525
Query: 62 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH 121
PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH
Sbjct: 526 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH 585
Query: 122 FRSQGAQPQQVTLRLALRLGNFPVRH 147
FRSQGAQPQQVTLRLALRLGNFPVRH
Sbjct: 586 FRSQGAQPQQVTLRLALRLGNFPVRH 611
>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]
Length = 829
Score = 212 bits (540), Expect = 8e-56
Identities = 111/140 (79%), Positives = 116/140 (82%), Gaps = 6/140 (4%)
Query: 2 QDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 61
+DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP
Sbjct: 466 EDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 525
Query: 62 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS------VSGPEVQPR 115
PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS + P+ P
Sbjct: 526 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSCMEPMETAEPQSSPA 585
Query: 116 TPASPHFRSQGAQPQQVTLR 135
+ H + P Q LR
Sbjct: 586 HSSPAHSSPAHSSPVQSLLR 605
>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
sapiens]
Length = 781
Score = 211 bits (538), Expect = 1e-55
Identities = 111/139 (79%), Positives = 115/139 (82%), Gaps = 6/139 (4%)
Query: 3 DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP 62
DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP
Sbjct: 419 DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP 478
Query: 63 SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS------VSGPEVQPRT 116
SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS + P+ P
Sbjct: 479 SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSCMEPMETAEPQSSPAH 538
Query: 117 PASPHFRSQGAQPQQVTLR 135
+ H + P Q LR
Sbjct: 539 SSPAHSSPAHSSPVQSLLR 557
>gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens]
Length = 633
Score = 210 bits (534), Expect = 4e-55
Identities = 109/131 (83%), Positives = 115/131 (87%), Gaps = 1/131 (0%)
Query: 2 QDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 61
+DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP
Sbjct: 466 EDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 525
Query: 62 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH 121
PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS S E+ + S
Sbjct: 526 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS-SSRELDDSSSESSD 584
Query: 122 FRSQGAQPQQV 132
+ +G +V
Sbjct: 585 LQLEGPSTLRV 595
>gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens]
Length = 882
Score = 210 bits (534), Expect = 4e-55
Identities = 109/131 (83%), Positives = 115/131 (87%), Gaps = 1/131 (0%)
Query: 2 QDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 61
+DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP
Sbjct: 466 EDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 525
Query: 62 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH 121
PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS S E+ + S
Sbjct: 526 PSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS-SSRELDDSSSESSD 584
Query: 122 FRSQGAQPQQV 132
+ +G +V
Sbjct: 585 LQLEGPSTLRV 595
>gi|15451779 promyelocytic leukemia protein isoform 10 [Homo
sapiens]
Length = 585
Score = 209 bits (532), Expect = 7e-55
Identities = 109/130 (83%), Positives = 114/130 (87%), Gaps = 1/130 (0%)
Query: 3 DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP 62
DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP
Sbjct: 419 DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPP 478
Query: 63 SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPHF 122
SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS S E+ + S
Sbjct: 479 SPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENS-SSRELDDSSSESSDL 537
Query: 123 RSQGAQPQQV 132
+ +G +V
Sbjct: 538 QLEGPSTLRV 547
>gi|109637788 promyelocytic leukemia protein isoform 5 [Homo
sapiens]
Length = 560
Score = 177 bits (448), Expect = 4e-45
Identities = 86/87 (98%), Positives = 87/87 (100%)
Query: 2 QDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 61
+DVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP
Sbjct: 466 EDVSNTTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGP 525
Query: 62 PSPRSPVIGSEVFLPNSNHVASGAGEA 88
PSPRSPVIGSEVFLPNSNHVASGAGEA
Sbjct: 526 PSPRSPVIGSEVFLPNSNHVASGAGEA 552
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.013
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 37 LARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVIS 96
L+ S+P P P S + PP + PP P G LP V+ + +
Sbjct: 341 LSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSR----ALP 396
Query: 97 SSEDSDAENSVSGPEVQPRTPASPHFRSQGAQP 129
++ + + V P PR P P S GA P
Sbjct: 397 ATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 28.1 bits (61), Expect = 2.8
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 42 PEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDS 101
P PRPS S PP PP P P LP S+ +R + +SSS
Sbjct: 295 PSTPRPSASSQAPPP----PPPPSRP---GPPPLPPSSSGNDETPRLPQRNLSLSSSTPP 347
Query: 102 DAENSVSGPEVQPRTPASP 120
SGP P + P
Sbjct: 348 LPSPGRSGPLPPPPSERPP 366
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.013
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 37 LARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVIS 96
L+ S+P P P S + PP + PP P G LP V+ + +
Sbjct: 341 LSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSR----ALP 396
Query: 97 SSEDSDAENSVSGPEVQPRTPASPHFRSQGAQP 129
++ + + V P PR P P S GA P
Sbjct: 397 ATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 28.1 bits (61), Expect = 2.8
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 42 PEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDS 101
P PRPS S PP PP P P LP S+ +R + +SSS
Sbjct: 295 PSTPRPSASSQAPPP----PPPPSRP---GPPPLPPSSSGNDETPRLPQRNLSLSSSTPP 347
Query: 102 DAENSVSGPEVQPRTPASP 120
SGP P + P
Sbjct: 348 LPSPGRSGPLPPPPSERPP 366
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 34.7 bits (78), Expect = 0.029
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 7 TTTAQKRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPH--LDGPPSP 64
++ AQ S C E EE +E L SPE+ S + V+P GPP+P
Sbjct: 244 SSRAQSESLSDLTCTP-----EEEENEEKPLLEVSPEERPSSGQQDVAPDRGPEPGPPAP 298
Query: 65 RSPVIGSEVFLPNSNHVASGAGEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPHFRS 124
P G+ H ++ EE V A ++ PE P P
Sbjct: 299 LPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLRVEPPSPP 358
Query: 125 QG 126
+G
Sbjct: 359 EG 360
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 34.3 bits (77), Expect = 0.038
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 28 ESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPV-IGSEVFLPNSNHVASGAG 86
+SEE ++ + E + + DG SP S + I +E L ++ +G
Sbjct: 460 DSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGKQISRSSG 519
Query: 87 EAEERVVVISSSEDSDAENSVSGPEVQPRTPASPHFRSQGAQPQQVTL 134
E + + ++S S S+ +P P+S S G QP+++TL
Sbjct: 520 EQQNKGRIVSPSLLSE----------EPLAPSSIDAESNGEQPEELTL 557
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 34.3 bits (77), Expect = 0.038
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 28 ESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPV-IGSEVFLPNSNHVASGAG 86
+SEE ++ + E + + DG SP S + I +E L ++ +G
Sbjct: 460 DSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGKQISRSSG 519
Query: 87 EAEERVVVISSSEDSDAENSVSGPEVQPRTPASPHFRSQGAQPQQVTL 134
E + + ++S S S+ +P P+S S G QP+++TL
Sbjct: 520 EQQNKGRIVSPSLLSE----------EPLAPSSIDAESNGEQPEELTL 557
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 34.3 bits (77), Expect = 0.038
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 28 ESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPV-IGSEVFLPNSNHVASGAG 86
+SEE ++ + E + + DG SP S + I +E L ++ +G
Sbjct: 472 DSEEEEDLEQMQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGKQISRSSG 531
Query: 87 EAEERVVVISSSEDSDAENSVSGPEVQPRTPASPHFRSQGAQPQQVTL 134
E + + ++S S S+ +P P+S S G QP+++TL
Sbjct: 532 EQQNKGRIVSPSLLSE----------EPLAPSSIDAESNGEQPEELTL 569
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 34.3 bits (77), Expect = 0.038
Identities = 24/84 (28%), Positives = 31/84 (36%)
Query: 36 RLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVI 95
R R P P P +VS P + PP SP P ++ AG +E
Sbjct: 780 RARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPA 839
Query: 96 SSSEDSDAENSVSGPEVQPRTPAS 119
+ SD E GPE P + S
Sbjct: 840 PAGPASDTEEEEPGPEGTPPSRGS 863
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 34.3 bits (77), Expect = 0.038
Identities = 24/84 (28%), Positives = 31/84 (36%)
Query: 36 RLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVI 95
R R P P P +VS P + PP SP P ++ AG +E
Sbjct: 862 RARRKGPPPPPPKRLSSVSGPSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPA 921
Query: 96 SSSEDSDAENSVSGPEVQPRTPAS 119
+ SD E GPE P + S
Sbjct: 922 PAGPASDTEEEEPGPEGTPPSRGS 945
>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 21 PRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNH 80
P V M ++G+++ R P P S + P P + P + + V
Sbjct: 491 PGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQPEGQGPQVSTSVLY----- 545
Query: 81 VASGAGEAEERVVVISSSEDSDAE 104
E ++V SSSEDSD++
Sbjct: 546 ---------EDLLVTSSSEDSDSD 560
>gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 528
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 21 PRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNH 80
P V M ++G+++ R P P S + P P + P + + V
Sbjct: 459 PGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQPEGQGPQVSTSVLY----- 513
Query: 81 VASGAGEAEERVVVISSSEDSDAE 104
E ++V SSSEDSD++
Sbjct: 514 ---------EDLLVTSSSEDSDSD 528
>gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]
Length = 560
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 21 PRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNH 80
P V M ++G+++ R P P S + P P + P + + V
Sbjct: 491 PGSVTFMRGDKGQKSPRFRMPPTSRPPENSASAQSPRFSRQPEGQGPQVSTSVLY----- 545
Query: 81 VASGAGEAEERVVVISSSEDSDAE 104
E ++V SSSEDSD++
Sbjct: 546 ---------EDLLVTSSSEDSDSD 560
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 32.3 bits (72), Expect = 0.15
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 28 ESEEGKEARLARSSPEQPRPSTSKAV---SPPHLDGPPSPRSPVIGSEVFLPNS-----N 79
E EE + L+R S E P P A+ S P L GP P +P G+E +S
Sbjct: 1865 EDEEESQDELSRPSSEAPPPGPPHALRADSSPIL-GPQPPDAPASGTEATRGSSVSEAER 1923
Query: 80 HVASGAGEAEERVVVIS-------SSEDSDAENSVSGPEVQPRTPASPHFRSQGAQP 129
AS + + + + S + D +++S V PR P SP + G++P
Sbjct: 1924 LTASSCSMSSQSMPGLPWLGPAPLGSVEKDTGSALSYKPVSPRRPWSPS-KEAGSRP 1979
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 32.3 bits (72), Expect = 0.15
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 28 ESEEGKEARLARSSPEQPRPSTSKAV---SPPHLDGPPSPRSPVIGSEVFLPNS-----N 79
E EE + L+R S E P P A+ S P L GP P +P G+E +S
Sbjct: 1865 EDEEESQDELSRPSSEAPPPGPPHALRADSSPIL-GPQPPDAPASGTEATRGSSVSEAER 1923
Query: 80 HVASGAGEAEERVVVIS-------SSEDSDAENSVSGPEVQPRTPASPHFRSQGAQP 129
AS + + + + S + D +++S V PR P SP + G++P
Sbjct: 1924 LTASSCSMSSQSMPGLPWLGPAPLGSVEKDTGSALSYKPVSPRRPWSPS-KEAGSRP 1979
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 35 ARLARSSPEQPRPS-TSKAVSPPHLDGPPSPRSPVIG-------SEVFLPNSNHVASGAG 86
++L+ SSP T + + PPH PP P+ P + +EV P S+ +
Sbjct: 519 SQLSLSSPGSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHPEPSKAEVLRPESDELDETDT 578
Query: 87 EAEERVVVISSSEDSDAENSVSGPE---VQPRTPASPHFRSQGAQP 129
E V +SS ++ + GPE Q P R + ++P
Sbjct: 579 PGSE--VGLSSQAEATTSTTGEGPECICTQEHGQGPPRKRKRASEP 622
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 32.0 bits (71), Expect = 0.19
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 13 RKCSQTQCPRKVIKMESEEGKEARLARSSPEQPRPS---TSKAVSPPHLDGPPSP 64
+K S PRK ++ +SEEG + S + P+ +SK VS P L PP P
Sbjct: 1255 KKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQP 1309
Score = 29.3 bits (64), Expect = 1.2
Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 33/110 (30%)
Query: 26 KMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGA 85
K +S+E + S ++P PS + +P P PR PV
Sbjct: 1225 KKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPV----------------- 1267
Query: 86 GEAEERVVVISSSEDSDAENSVSGP---EVQPRTPASPHFRSQGAQPQQV 132
E+ E +VS P Q TPAS Q +QP V
Sbjct: 1268 -------------EEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALV 1304
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 39 RSSPEQPRPSTSKAVSPPH---LDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEERVVVI 95
R P++P P+ S+ PPH L GPP P L S+ G G A+ V+
Sbjct: 228 RPGPKRPDPAPSRLPPPPHAGALRGPPLPHR--------LRRSHFREVGGGCADSVVLAE 279
Query: 96 SSSEDSDAENSVSGPEVQPRTPASP 120
S E + A V PA P
Sbjct: 280 PSREQAHAAPPAWRTRVPGAGPAPP 304
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 32.0 bits (71), Expect = 0.19
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 35 ARLARSSPEQPRPSTSKA---------VSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGA 85
ARL R P P +A + PP + P +SP + + H +G
Sbjct: 167 ARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGG 226
Query: 86 GEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH-FRSQGAQP 129
GE + +V E+ E+S P+V P PA P F +G +P
Sbjct: 227 GEGDPGPIVGGRPEN---EDSPRFPDV-PTRPAGPSPFYCEGTEP 267
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 32.0 bits (71), Expect = 0.19
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 35 ARLARSSPEQPRPSTSKA---------VSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGA 85
ARL R P P +A + PP + P +SP + + H +G
Sbjct: 167 ARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARAHSRAHTCAGG 226
Query: 86 GEAEERVVVISSSEDSDAENSVSGPEVQPRTPASPH-FRSQGAQP 129
GE + +V E+ E+S P+V P PA P F +G +P
Sbjct: 227 GEGDPGPIVGGRPEN---EDSPRFPDV-PTRPAGPSPFYCEGTEP 267
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 32.0 bits (71), Expect = 0.19
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 45 PRPSTS-----KAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGA--GEAEERVVVISS 97
PRP+ + + V P + PP PR+P+ + H A A G+ R + +
Sbjct: 633 PRPARTPGTLQRQVRIPQMPAPPHPRTPLGSPAAYWKRVGHSACSASCGKGVWRPIFLCI 692
Query: 98 SEDSDAENSVSGPEVQPRTPASP 120
S +S E R PASP
Sbjct: 693 SRESGEELDERSCAAGARPPASP 715
>gi|65288071 tensin 3 [Homo sapiens]
Length = 1445
Score = 32.0 bits (71), Expect = 0.19
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 42 PEQPRPSTSKAVSP------------PHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAE 89
P+ +PS SKA P P L PSP SP + + + N +
Sbjct: 654 PDTQQPSPSKAFKPRFPGDQVVNGAGPELSTGPSPGSPTLDIDQSIEQLNRLILELDPTF 713
Query: 90 ERVVVISSSEDSDAENSVSGPEVQPRTPASPHFRSQGAQPQQVTLR 135
E + ++ S A SVS V AS G P + T R
Sbjct: 714 EPIPTHMNALGSQANGSVSPDSVGGGLRASSRLPDTGEGPSRATGR 759
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 32.0 bits (71), Expect = 0.19
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 45 PRPSTS-----KAVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGA--GEAEERVVVISS 97
PRP+ + + V P + PP PR+P+ + H A A G+ R + +
Sbjct: 633 PRPARTPGTLQRQVRIPQMPAPPHPRTPLGSPAAYWKRVGHSACSASCGKGVWRPIFLCI 692
Query: 98 SEDSDAENSVSGPEVQPRTPASP 120
S +S E R PASP
Sbjct: 693 SRESGEELDERSCAAGARPPASP 715
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 32.0 bits (71), Expect = 0.19
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 12 KRKCSQTQCPRKVIKMESEEGKEARLARSSPEQPR--PSTSKAVSPPHLDGPPSPRSPVI 69
K S+TQ PR+V + S + + +PR PSTS + PP +GP SP S
Sbjct: 530 KPSVSRTQ-PREVRRAASSVPNLKKTNAQAAPKPRKAPSTSHSGFPPVANGPRSPPSLRC 588
Query: 70 GSEVFLPNSNHVASGAGEAEERVVV--------ISSSEDSDAENSVSGPEV-QPRTPASP 120
G ++ ++ G ++V I + E+ E ++ + +PRTP+
Sbjct: 589 G------EASPPSAACGSPASQLVATPSLELGPIPAGEEKALELPLAASSIPRPRTPSPE 642
Query: 121 HFRSQGAQPQQVTL 134
RS ++++L
Sbjct: 643 SHRSPAEGSERLSL 656
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,896,535
Number of Sequences: 37866
Number of extensions: 368598
Number of successful extensions: 2997
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 2673
Number of HSP's gapped (non-prelim): 582
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.