Guide to the Human Genome
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Name: LOC646508 Sequence: fasta or formatted (528aa) NCBI GI: 239751865
Description:

PREDICTED: hypothetical LOC646508

Not currently referenced in the text

Other entries for this name:
alt prot {560aa} PREDICTED: hypothetical LOC646508
alt prot {560aa} PREDICTED: hypothetical LOC646508
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         38           2
 C cysteine            1.5          8           1
 D aspartate           4.2         22           1
 E glutamate           4.5         24           1
 F phenylalanine       2.7         14           1
 G glycine             5.9         31           2
 H histidine           2.5         13           2
 I isoleucine          1.1          6           1
 K lysine              7.4         39           2
 L leucine             7.8         41           2
 M methionine          2.3         12           1
 N asparagine          2.5         13           1
 P proline            13.6         72           3
 Q glutamine           8.5         45           4
 R arginine            6.1         32           2
 S serine              8.7         46           3
 T threonine           7.4         39           2
 V valine              4.5         24           2
 W tryptophan          0.9          5           1
 X unknown             0.2          1           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical LOC646508 
LOC646508             0.977   PREDICTED: hypothetical LOC646508 
LOC646508             0.977   PREDICTED: hypothetical LOC646508 
FAM90A14              0.144   PREDICTED: hypothetical protein 
FAM90A5               0.144   PREDICTED: hypothetical protein 
FAM90A15              0.144   PREDICTED: hypothetical protein LOC389630 
FAM90A12              0.142   PREDICTED: hypothetical protein 
FAM90A13              0.142   PREDICTED: hypothetical protein 
FAM90A9               0.142   PREDICTED: hypothetical protein 
FAM90A3               0.142   PREDICTED: hypothetical protein 
FAM90A8               0.141   PREDICTED: hypothetical protein 
FAM90A1               0.141   hypothetical protein LOC55138 
FAM90A20              0.139   PREDICTED: hypothetical protein 
FAM90A10              0.138   PREDICTED: hypothetical protein LOC441328 
LOC100287045          0.138   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.138   PREDICTED: hypothetical protein XP_002342468 isofor...
FAM90A20              0.138   PREDICTED: hypothetical protein 
FAM90A19              0.138   PREDICTED: hypothetical protein 
FAM90A18              0.138   PREDICTED: hypothetical protein LOC441326 
FAM90A7               0.136   hypothetical protein LOC441317 
PCLO                  0.035   piccolo isoform 2 
PCLO                  0.035   piccolo isoform 1 
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
FLJ22184              0.024   PREDICTED: hypothetical protein LOC80164 
ZC3H18                0.024   zinc finger CCCH-type containing 18 
NEFH                  0.024   neurofilament, heavy polypeptide 200kDa 
GNAS                  0.024   GNAS complex locus alex 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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