Guide to the Human Genome
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Name: LOC100128648 Sequence: fasta or formatted (251aa) NCBI GI: 239754243
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {251aa} PREDICTED: hypothetical protein
alt mRNA {251aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         37           4
 C cysteine            1.6          4           1
 D aspartate           6.0         15           2
 E glutamate           5.6         14           2
 F phenylalanine       0.4          1           1
 G glycine             8.4         21           3
 H histidine           8.4         21           2
 I isoleucine          2.0          5           2
 K lysine              1.6          4           1
 L leucine            12.4         31           2
 M methionine          2.8          7           2
 N asparagine          0.0          0           0
 P proline             2.4          6           1
 Q glutamine           5.2         13           2
 R arginine            6.0         15           2
 S serine              6.0         15           2
 T threonine           2.8          7           2
 V valine             12.0         30           3
 W tryptophan          1.6          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128648          1.000   PREDICTED: hypothetical protein 
LOC100128648          1.000   PREDICTED: hypothetical protein 
RNF186                0.021   ring finger protein 186 
RNF111                0.015   ring finger protein 111 
LOC100294001          0.015   PREDICTED: hypothetical protein 
LOC100290969          0.015   PREDICTED: hypothetical protein XP_002347122 
LOC100289446          0.015   PREDICTED: hypothetical protein XP_002344250 
RASSF10               0.013   Ras association (RalGDS/AF-6) domain family (N-term...
CACHD1                0.011   cache domain containing 1 
CLSTN1                0.011   calsyntenin 1 isoform 1 
CLSTN1                0.011   calsyntenin 1 isoform 2 
LOC100290187          0.011   PREDICTED: hypothetical protein XP_002348281 
LOC100291455          0.008   PREDICTED: hypothetical protein XP_002346892 
LOC100288744          0.008   PREDICTED: hypothetical protein XP_002342752 
LOC100288744          0.008   PREDICTED: hypothetical protein 
NBEAL2                0.006   neurobeachin-like 2 
LOC727962             0.006   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
LOC100293316          0.006   PREDICTED: hypothetical protein 
LOC100287115          0.006   PREDICTED: hypothetical protein 
LOC100287115          0.006   PREDICTED: hypothetical protein XP_002343389 
ZNF212                0.006   zinc finger protein 212 
ZNF365                0.006   zinc finger protein 365 isoform C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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