Guide to the Human Genome
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Search of human proteins with 239752210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]           270   2e-73
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]           270   2e-73
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]           265   6e-72
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]            73   6e-14
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]            73   6e-14
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]            73   6e-14
gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-05
gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-05
gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-05
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo...    32   0.19 
gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]            32   0.19 
gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo ...    32   0.19 
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       30   0.41 
gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    30   0.54 
gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho...    30   0.54 
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ...    30   0.54 
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ...    30   0.54 
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]           30   0.54 
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]           30   0.54 
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]           30   0.54 
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               30   0.54 
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]         30   0.71 
gi|84105335 mesenchyme homeobox 2 [Homo sapiens]                       29   1.2  
gi|157502184 kinesin family member 6 [Homo sapiens]                    28   1.6  
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      28   1.6  
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]       28   1.6  
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       28   1.6  
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       28   1.6  
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       28   1.6  

>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score =  270 bits (691), Expect = 2e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
           MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW
Sbjct: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60

Query: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
           LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP
Sbjct: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120

Query: 121 AEVMTEECGL 130
           AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130


>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score =  270 bits (691), Expect = 2e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
           MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW
Sbjct: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60

Query: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
           LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP
Sbjct: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120

Query: 121 AEVMTEECGL 130
           AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130


>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score =  265 bits (678), Expect = 6e-72
 Identities = 128/130 (98%), Positives = 128/130 (98%)

Query: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPW 60
           MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQ PKPW
Sbjct: 1   MMAAAGHLEQLLPSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQPPKPW 60

Query: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
           LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ EGP
Sbjct: 61  LQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQTEGP 120

Query: 121 AEVMTEECGL 130
           AEVMTEECGL
Sbjct: 121 AEVMTEECGL 130


>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 73.2 bits (178), Expect = 6e-14
 Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 23  ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
           A+AA SME   A DK E  PFQV    +    LQLPK  L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164

Query: 82  QAQLQLPKPWLQTQASLHSWGPRKAP 107
           QAQL+  KP LQTQA LHSWG  + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190


>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 73.2 bits (178), Expect = 6e-14
 Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 23  ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
           A+AA SME   A DK E  PFQV    +    LQLPK  L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164

Query: 82  QAQLQLPKPWLQTQASLHSWGPRKAP 107
           QAQL+  KP LQTQA LHSWG  + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190


>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 190

 Score = 73.2 bits (178), Expect = 6e-14
 Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 23  ARAACSMEKAKARDKRETRPFQVGVRASWML-LQLPKPWLQTQASLCSQGPEGQVGAPPS 81
           A+AA SME   A DK E  PFQV    +    LQLPK  L+ + S C+ G + + GAPPS
Sbjct: 106 AKAAHSMEPVAAGDKWEPSPFQVARAGTPQAQLQLPKEGLRPRHS-CALGSQEKAGAPPS 164

Query: 82  QAQLQLPKPWLQTQASLHSWGPRKAP 107
           QAQL+  KP LQTQA LHSWG  + P
Sbjct: 165 QAQLEPFKPQLQTQAPLHSWGLGRPP 190


>gi|169194706 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 29  MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
           ME   A DK E  PFQV    ++   QLP   +    TQA LCS        AP      
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59

Query: 86  QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
                WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 60  VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91


>gi|169201915 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 29  MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
           ME   A DK E  PFQV    ++   QLP   +    TQA LCS        AP      
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59

Query: 86  QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
                WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 60  VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91


>gi|169191953 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 229

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/96 (40%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 29  MEKAKARDKRETRPFQVGVRASWMLLQLP---KPWLQTQASLCSQGPEGQVGAPPSQAQL 85
           ME   A DK E  PFQV    ++   QLP   +    TQA LCS        AP      
Sbjct: 1   MEPVGAGDKHEPCPFQVDGVGAYQA-QLPAAAQAAAVTQAPLCSWKLGAGRSAPALPGIT 59

Query: 86  QLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGPA 121
                WLQ QASLHS G RKAP    +Q    E PA
Sbjct: 60  VATLLWLQIQASLHSQGSRKAPFPPRAQ----EAPA 91


>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
           sapiens]
          Length = 901

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 42  PFQVGVRASWMLLQLPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSW 101
           PF  G R +       +PW Q   S        + G+P S     LP P + T+  L  W
Sbjct: 12  PFLCGWRHAAPAATCTEPWSQAHGSPTHPNHTCEAGSPSSSTAPDLP-PCVPTELLLSPW 70

Query: 102 GPRKAPLVAGSQGPQKE 118
             R   +  GSQ   ++
Sbjct: 71  PTRSDHINGGSQAGSEQ 87


>gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 100

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 55  QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
           Q P+ W     S+ + G   EGQ G P    Q  LP PW Q      S  PRK   + GS
Sbjct: 39  QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89

Query: 113 QGP 115
            GP
Sbjct: 90  GGP 92


>gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
           sapiens]
          Length = 100

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 55  QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
           Q P+ W     S+ + G   EGQ G P    Q  LP PW Q      S  PRK   + GS
Sbjct: 39  QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89

Query: 113 QGP 115
            GP
Sbjct: 90  GGP 92


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 30.4 bits (67), Expect = 0.41
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 70  QGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ 116
           +GP+G+VGAP S+ +     P      ++   GPR  P   G  GPQ
Sbjct: 308 EGPKGEVGAPGSKGEAGPTGP----MGAMGPLGPRGMPGERGRLGPQ 350



 Score = 27.3 bits (59), Expect = 3.5
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 14/53 (26%)

Query: 69  SQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQG-PQKEGP 120
           +QGP G  G P S  ++  P             GP  AP  AG  G P KEGP
Sbjct: 901 TQGPPGATGFPGSAGRVGPP-------------GPAGAPGPAGPLGEPGKEGP 940


>gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 61  LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
           L+   SLCS  P  +  +PPS+AQ    LP+P L TQ  L SW         R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508

Query: 112 SQGPQ 116
            + P+
Sbjct: 509 DEDPK 513


>gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo
           sapiens]
          Length = 880

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 61  LQTQASLCSQGPEGQVGAPPSQAQLQ--LPKPWLQTQASLHSW-------GPRKAPLVAG 111
           L+   SLCS  P  +  +PPS+AQ    LP+P L TQ  L SW         R+ P ++G
Sbjct: 453 LRRAGSLCS--PLDEPVSPPSRAQRSRSLPQPKLGTQ--LPSWLLAPASRPQRRRPFLSG 508

Query: 112 SQGPQ 116
            + P+
Sbjct: 509 DEDPK 513


>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 464

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
          LP P  +   SLCS G   Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80


>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
          sapiens]
          Length = 490

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
          LP P  +   SLCS G   Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80


>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
          sapiens]
          Length = 522

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 56 LPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKP 90
          LP P  +   SLCS G   Q G P +Q QL+ P+P
Sbjct: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRP 80


>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
          Length = 1127

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 13  PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
           PS+W Q    ++A    E+ K ++  +  P Q+  +      Q PK W  +  S      
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527

Query: 67  -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
                +C +    Q   P S     + Q      Q+Q S  SWG   A L+   Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582


>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
          Length = 793

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 13  PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
           PS+W Q    ++A    E+ K ++  +  P Q+  +      Q PK W  +  S      
Sbjct: 136 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 194

Query: 67  -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
                +C +    Q   P S     + Q      Q+Q S  SWG   A L+   Q
Sbjct: 195 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 249


>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
          Length = 1077

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 15/115 (13%)

Query: 13  PSRWLQQLGMARAACSMEKAKARDKRETRPFQVGVRASWMLLQLPKPWLQTQAS------ 66
           PS+W Q    ++A    E+ K ++  +  P Q+  +      Q PK W  +  S      
Sbjct: 469 PSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL-QKEQDPKKQTPKSWTPSMQSEQNTTK 527

Query: 67  -----LCSQGPEGQVGAPPS---QAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQ 113
                +C +    Q   P S     + Q      Q+Q S  SWG   A L+   Q
Sbjct: 528 SWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQ 582


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 71  GPEGQVG--APPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQKEGP 120
           GP+G +G   PP    +Q P      Q   H  G +  P   G QGP  +GP
Sbjct: 724 GPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGP 775


>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
          Length = 1682

 Score = 29.6 bits (65), Expect = 0.71
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 55  QLPKPWLQTQASLCSQGPEGQVGAPPSQAQ----LQLPKPWLQTQASLHSWGPRKAPLVA 110
           QL KP L +     + GPE +  APP + +    L  P P+     + H  G R  P   
Sbjct: 275 QLTKPGLWSTLHGDAWGPERKGSAPPERQEQRHSLPHPYPYPAPAYTAHPPGHRLVPAAP 334

Query: 111 GSQGPQKEG 119
              GP+  G
Sbjct: 335 PGPGPRPPG 343


>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
          Length = 304

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 47  VRASWMLLQLPKPWLQTQASLCSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKA 106
           ++ +W L Q+  P    + SLC Q P+   G PP       P       +SL S  P  A
Sbjct: 88  LQTNWHLPQMSSPPSAARHSLCLQ-PDS--GGPPELG--SSPPVLCSNSSSLGSSTPTGA 142

Query: 107 PLVAGSQGPQKEGPAE 122
               G  G Q   PAE
Sbjct: 143 ACAPGDYGRQALSPAE 158


>gi|157502184 kinesin family member 6 [Homo sapiens]
          Length = 814

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 22/135 (16%)

Query: 6   GHLEQLLPSRWLQQLGMA----------------RAACSMEKAKARDKR---ETRPFQVG 46
           GHL++ +  R +QQ+ +                 +    +E+ K R K      +  +V 
Sbjct: 604 GHLKEEITQRHIQQVALGISENMAVPLMPDQQEEKLRSQLEEEKRRYKTMFTRLKALKVE 663

Query: 47  VRASWMLLQLPKPWLQTQASL--CSQGPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPR 104
           +    +L+   K  LQ +  +    +    QV +P   + L   KP+LQT  S H W   
Sbjct: 664 IEHLQLLMDKAKVKLQKEFEVWWAEEATNLQVNSPAVNS-LDHTKPFLQTSDSQHEWSQL 722

Query: 105 KAPLVAGSQGPQKEG 119
            +   +G    Q +G
Sbjct: 723 LSNKSSGGWEVQDQG 737


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 71  GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
           GP G  G P  + ++ LP P           GPR  P   G  GPQ    K+GP  V  E
Sbjct: 473 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 528


>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
          Length = 610

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 71  GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
           GP G  G P  + ++ LP P           GPR  P   G  GPQ    K+GP  V  E
Sbjct: 422 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 477


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 71  GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
           GP G  G P  + ++ LP P           GPR  P   G  GPQ    K+GP  V  E
Sbjct: 411 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 466


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 71  GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
           GP G  G P  + ++ LP P           GPR  P   G  GPQ    K+GP  V  E
Sbjct: 413 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 468


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 71  GPEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGSQGPQ----KEGPAEVMTE 126
           GP G  G P  + ++ LP P           GPR  P   G  GPQ    K+GP  V  E
Sbjct: 416 GPPGAPGIPGQKGEIGLPGP----PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 471


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,062,698
Number of Sequences: 37866
Number of extensions: 285710
Number of successful extensions: 1145
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1075
Number of HSP's gapped (non-prelim): 116
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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