Guide to the Human Genome
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Name: LOC100129214 Sequence: fasta or formatted (229aa) NCBI GI: 169201915
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {229aa} PREDICTED: hypothetical protein
alt mRNA {229aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         30           3
 C cysteine            4.4         10           1
 D aspartate           0.9          2           1
 E glutamate           4.8         11           1
 F phenylalanine       1.3          3           1
 G glycine            10.0         23           1
 H histidine           2.2          5           1
 I isoleucine          1.7          4           1
 K lysine              4.4         10           2
 L leucine            11.8         27           2
 M methionine          0.9          2           1
 N asparagine          0.4          1           1
 P proline            11.8         27           3
 Q glutamine           7.4         17           1
 R arginine            3.9          9           1
 S serine              7.4         17           2
 T threonine           3.1          7           1
 V valine              6.6         15           2
 W tryptophan          3.5          8           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129214          1.000   PREDICTED: hypothetical protein 
LOC100129214          1.000   PREDICTED: hypothetical protein 
LOC100128559          0.046   PREDICTED: hypothetical protein 
LOC100128559          0.046   PREDICTED: hypothetical protein 
LOC100128559          0.046   PREDICTED: hypothetical protein 
LOC730163             0.044   PREDICTED: hypothetical protein 
LOC730163             0.044   PREDICTED: hypothetical protein 
LOC730163             0.044   PREDICTED: hypothetical protein 
ATXN2L                0.028   ataxin 2 related protein isoform B 
ATXN2L                0.028   ataxin 2 related protein isoform E 
ATXN2L                0.028   ataxin 2 related protein isoform C 
ATXN2L                0.028   ataxin 2 related protein isoform A 
ATXN2L                0.028   ataxin 2 related protein isoform D 
KIF19                 0.022   kinesin family member 19 
SNAPC4                0.022   small nuclear RNA activating complex, polypeptide 4,...
SLC23A3               0.022   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.022   solute carrier family 23 (nucleobase transporters),...
FLJ31945              0.018   PREDICTED: hypothetical protein 
FLJ31945              0.018   PREDICTED: hypothetical protein 
CDKN1C                0.015   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.015   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.015   cyclin-dependent kinase inhibitor 1C isoform a 
TFE3                  0.015   transcription factor E3 
INS-IGF2              0.015   insulin- insulin-like growth factor 2 
FLJ31945              0.013   PREDICTED: hypothetical protein 
FOXJ1                 0.013   forkhead box J1 
RPH3A                 0.011   rabphilin 3A homolog isoform 1 
RPH3A                 0.011   rabphilin 3A homolog isoform 2 
CCDC88B               0.011   coiled-coil domain containing 88 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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