Guide to the Human Genome
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Name: LOC730163 Sequence: fasta or formatted (130aa) NCBI GI: 239757723
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {130aa} PREDICTED: hypothetical protein
alt mRNA {130aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         16           3
 C cysteine            2.3          3           1
 D aspartate           0.8          1           1
 E glutamate           6.2          8           2
 F phenylalanine       0.8          1           1
 G glycine             8.5         11           1
 H histidine           1.5          2           1
 I isoleucine          0.0          0           0
 K lysine              5.4          7           1
 L leucine            12.3         16           2
 M methionine          4.6          6           2
 N asparagine          0.0          0           0
 P proline            10.0         13           2
 Q glutamine          12.3         16           2
 R arginine            5.4          7           1
 S serine              6.9          9           1
 T threonine           3.1          4           1
 V valine              3.8          5           1
 W tryptophan          3.8          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730163             1.000   PREDICTED: hypothetical protein 
LOC730163             0.980   PREDICTED: hypothetical protein 
LOC100128559          0.196   PREDICTED: hypothetical protein 
LOC100128559          0.196   PREDICTED: hypothetical protein 
LOC100128559          0.196   PREDICTED: hypothetical protein 
LOC100129214          0.082   PREDICTED: hypothetical protein 
LOC100129214          0.082   PREDICTED: hypothetical protein 
LOC100129214          0.082   PREDICTED: hypothetical protein 
TTC34                 0.029   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
LOC100133065          0.029   PREDICTED: hypothetical protein 
LOC100287326          0.029   PREDICTED: hypothetical protein XP_002343352 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
PIK3R5                0.020   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
PIK3R5                0.020   phosphoinositide-3-kinase, regulatory subunit 5 [Ho...
LOC100293869          0.020   PREDICTED: hypothetical protein 
LOC100291040          0.020   PREDICTED: hypothetical protein XP_002347839 
LOC100289012          0.020   PREDICTED: hypothetical protein XP_002343616 
CAPRIN2               0.020   C1q domain containing 1 isoform 1 
CAPRIN2               0.020   C1q domain containing 1 isoform 3 
CAPRIN2               0.020   C1q domain containing 1 isoform 2 
WDR33                 0.020   WD repeat domain 33 isoform 1 
KDM6B                 0.020   lysine (K)-specific demethylase 6B 
MEOX2                 0.016   mesenchyme homeobox 2 
KIF6                  0.012   kinesin family member 6 
COL13A1               0.012   alpha 1 type XIII collagen isoform 20 
COL13A1               0.012   alpha 1 type XIII collagen isoform 19 
COL13A1               0.012   alpha 1 type XIII collagen isoform 18 
COL13A1               0.012   alpha 1 type XIII collagen isoform 17 
COL13A1               0.012   alpha 1 type XIII collagen isoform 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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