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Search of human proteins with 239752180
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752180 PREDICTED: hypothetical protein [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757695 PREDICTED: hypothetical protein XP_002345523 [Homo ... 485 e-137
gi|239752180 PREDICTED: hypothetical protein [Homo sapiens] 485 e-137
gi|239746703 PREDICTED: hypothetical protein XP_002343814 [Homo ... 485 e-137
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|171906567 peripheral benzodiazepine receptor-associated prote... 36 0.033
gi|171906559 peripheral benzodiazepine receptor-associated prote... 36 0.033
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 35 0.056
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.056
gi|11415052 retinoid X receptor, beta [Homo sapiens] 35 0.073
gi|239753475 PREDICTED: hypothetical protein [Homo sapiens] 35 0.073
gi|239748044 PREDICTED: hypothetical protein XP_002346500 [Homo ... 35 0.073
gi|239741935 PREDICTED: hypothetical protein XP_002342357 [Homo ... 35 0.073
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 34 0.096
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 33 0.21
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 33 0.21
gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens] 33 0.28
gi|56090582 immunity-related GTPase family, Q [Homo sapiens] 33 0.28
gi|134244285 Notch homolog 3 [Homo sapiens] 32 0.36
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 0.36
gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo ... 32 0.36
gi|239508872 PREDICTED: similar to Putative uncharacterized prot... 32 0.36
gi|146134388 YLP motif containing 1 [Homo sapiens] 32 0.36
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 32 0.36
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 32 0.48
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 32 0.48
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 32 0.48
>gi|239757695 PREDICTED: hypothetical protein XP_002345523 [Homo
sapiens]
Length = 236
Score = 485 bits (1249), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP
Sbjct: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
Query: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP
Sbjct: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
Query: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL
Sbjct: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
Query: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG
Sbjct: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
>gi|239752180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 485 bits (1249), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP
Sbjct: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
Query: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP
Sbjct: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
Query: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL
Sbjct: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
Query: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG
Sbjct: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
>gi|239746703 PREDICTED: hypothetical protein XP_002343814 [Homo
sapiens]
Length = 236
Score = 485 bits (1249), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP
Sbjct: 1 MVLLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP 60
Query: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP
Sbjct: 61 GRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP 120
Query: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL
Sbjct: 121 GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLL 180
Query: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG
Sbjct: 181 NREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQLLPLQFPDG 236
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.015
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 8 LVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP--GRSTC 65
L +RV A PS+++ +W GG + P + A+ + P GR+
Sbjct: 305 LPTARVAHASPPSLAAA---QWRLGGG---KRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 66 PACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP----- 120
PA S + GGS G A LP S RP + PR S PP
Sbjct: 359 PAQGSELWARAERHGGSSG---ARTLPTPSRARPGKPAPRGSA----------PPARLRG 405
Query: 121 ---GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLG 158
GS + GSG + G AL +R + PRP+G
Sbjct: 406 GGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVG 446
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 37.0 bits (84), Expect = 0.015
Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 29/161 (18%)
Query: 8 LVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSP--GRSTC 65
L +RV A PS+++ +W GG + P + A+ + P GR+
Sbjct: 305 LPTARVAHASPPSLAAA---QWRLGGG---KRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 66 PACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPP----- 120
PA S + GGS G A LP S RP + PR S PP
Sbjct: 359 PAQGSELWARAERHGGSSG---ARTLPTPSRARPGKPAPRGSA----------PPARLRG 405
Query: 121 ---GSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLG 158
GS + GSG + G AL +R + PRP+G
Sbjct: 406 GGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVG 446
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 35.8 bits (81), Expect = 0.033
Identities = 41/167 (24%), Positives = 54/167 (32%), Gaps = 9/167 (5%)
Query: 28 RWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVAGTHPHWGGSGGRL- 86
R +S ++P + ALAP++ P P R+ +A P G L
Sbjct: 998 RTMSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQ 1057
Query: 87 -PALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPAL 145
PA P+G+ P PS M PP G+ G+SE T +
Sbjct: 1058 HPA---PLGTQEPPGAPPASPSR-EMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTST 1113
Query: 146 FSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLLNREEVSLGPREE 192
P P PS Q W G A P S P E
Sbjct: 1114 LGE---KDPGPAAPSLAKQEAEWTAGEACPASSSTQGARAQQAPNTE 1157
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 35.8 bits (81), Expect = 0.033
Identities = 41/167 (24%), Positives = 54/167 (32%), Gaps = 9/167 (5%)
Query: 28 RWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVAGTHPHWGGSGGRL- 86
R +S ++P + ALAP++ P P R+ +A P G L
Sbjct: 1058 RTMSPHGESADSIPAPITPALAPASLPARVSCPSPHPSPEARAPLASASPGPGDPSSPLQ 1117
Query: 87 -PALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPAL 145
PA P+G+ P PS M PP G+ G+SE T +
Sbjct: 1118 HPA---PLGTQEPPGAPPASPSR-EMAKGSHEDPPAPCSQEEAGAAVLGTSEERTASTST 1173
Query: 146 FSRGLAAKPRPLGPSSWGQLRSWARGWATPRCSLLNREEVSLGPREE 192
P P PS Q W G A P S P E
Sbjct: 1174 LGE---KDPGPAAPSLAKQEAEWTAGEACPASSSTQGARAQQAPNTE 1217
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 35.0 bits (79), Expect = 0.056
Identities = 64/242 (26%), Positives = 91/242 (37%), Gaps = 32/242 (13%)
Query: 3 LLPPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGR 62
LLPP L S A + S G S ++V + +LA + P SP +
Sbjct: 598 LLPPTLPTSATSLASDSTFDSGQGSTVYSDSQSSQQSV---MLGSLADAAP-----SPAQ 649
Query: 63 STC--PACRSAVAGTH-PHWGGSGGRLPALWLPVGSSTRPV------EAWPRPSLISMVN 113
C P V P G A LPVGS P + +P P++ S
Sbjct: 650 CVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGLPVGSVPAPACPPSLQQHFPDPAM-SFAP 708
Query: 114 VVFILPPGSAVPTATGSGA-PGSSERATGPPALFSRGLAAKP----RPLGPSSWGQLRSW 168
V + PP + +PT G A PG P + LA +P +P+ P L
Sbjct: 709 V--LPPPSTPMPTGPGQPAPPGQQPPPLAQPTPLPQVLAPQPVVPLQPVPPHLPPYLAPA 766
Query: 169 ARGWATPRCSLLNREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGTETLGCQGLLLALQL 228
++ A + L + L P + P + +P + VV P+ T G GL AL
Sbjct: 767 SQVGAPAQLKPLQMPQAPLQPLAQVPPQ------MPPIPVVPPI-TPLAGIDGLPPALPD 819
Query: 229 LP 230
LP
Sbjct: 820 LP 821
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.0 bits (79), Expect = 0.056
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 41 PDKVDNALAPSTPFGDTLSPGRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPV 100
P ++ P G +PG + P S+ P G+ P GS P
Sbjct: 100 PPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGA---------PPGSGPGPT 150
Query: 101 EAWPRPSLISMVNVVFILPPGSAVPTATGSGAPGSSERATGPP 143
P P++ S PPG+ PT SG P + +A GPP
Sbjct: 151 PT-PPPAVTSA-------PPGAPPPTPPSSGVPTTPPQAGGPP 185
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 34.7 bits (78), Expect = 0.073
Identities = 46/173 (26%), Positives = 61/173 (35%), Gaps = 25/173 (14%)
Query: 5 PPLLVLSRVGGARSPSVSSEWGERWLSGGSGGVR-------AVPDKVDNALAPSTPFGDT 57
P + V G + E GE G R + P+ + + P +P G
Sbjct: 45 PAAAAAAAVAGGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPP 104
Query: 58 LSPGRSTCPACRSAVAGTHPHWGGS--GGRLPALWLPVGSSTRPVEAWPR---PSLISMV 112
L P ST P+ + A P G P + +GS P A P P +
Sbjct: 105 LPP--STAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQI 162
Query: 113 NVVFILPPGSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQL 165
N LP G GSG P + PP L RGL P P GP + +L
Sbjct: 163 NSTVSLPGG-------GSGPPEDVK----PPVLGVRGLHCPPPPGGPGAGKRL 204
>gi|239753475 PREDICTED: hypothetical protein [Homo sapiens]
Length = 721
Score = 34.7 bits (78), Expect = 0.073
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 21 VSSEWGERWL--SGGS-----GGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVA 73
+ S+ G RWL S GS G + + + P G L+ R+ PA V
Sbjct: 186 LGSQEGTRWLPPSRGSWKPLNGSNQTQKHEAQKPPKHTAPPGPDLTSIRT--PASEPPVT 243
Query: 74 GTHPHWGGSG--GRLPALWLPVGSSTRPVE-AW-PRPSLISM-------VNVVFILPPGS 122
G HP GG G RLP W V +S + W RPS + + + + P S
Sbjct: 244 GCHPPSGGCGWISRLPRTWTRVAASRWGLHMGWGQRPSTVLLPLPSSGRPCLHHLSPTSS 303
Query: 123 AVPTATGSGAPG 134
+P GAPG
Sbjct: 304 ILPPQAPGGAPG 315
>gi|239748044 PREDICTED: hypothetical protein XP_002346500 [Homo
sapiens]
Length = 721
Score = 34.7 bits (78), Expect = 0.073
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 21 VSSEWGERWL--SGGS-----GGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVA 73
+ S+ G RWL S GS G + + + P G L+ R+ PA V
Sbjct: 186 LGSQEGTRWLPPSRGSWKPLNGSNQTQKHEAQKPPKHTAPPGPDLTSIRT--PASEPPVT 243
Query: 74 GTHPHWGGSG--GRLPALWLPVGSSTRPVE-AW-PRPSLISM-------VNVVFILPPGS 122
G HP GG G RLP W V +S + W RPS + + + + P S
Sbjct: 244 GCHPPSGGCGWISRLPRTWTRVAASRWGLHMGWGQRPSTVLLPLPSSGRPCLHHLSPTSS 303
Query: 123 AVPTATGSGAPG 134
+P GAPG
Sbjct: 304 ILPPQAPGGAPG 315
>gi|239741935 PREDICTED: hypothetical protein XP_002342357 [Homo
sapiens]
Length = 721
Score = 34.7 bits (78), Expect = 0.073
Identities = 39/132 (29%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
Query: 21 VSSEWGERWL--SGGS-----GGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVA 73
+ S+ G RWL S GS G + + + P G L+ R+ PA V
Sbjct: 186 LGSQEGTRWLPPSRGSWKPLNGSNQTQKHEAQKPPKHTAPPGPDLTSIRT--PASEPPVT 243
Query: 74 GTHPHWGGSG--GRLPALWLPVGSSTRPVE-AW-PRPSLISM-------VNVVFILPPGS 122
G HP GG G RLP W V +S + W RPS + + + + P S
Sbjct: 244 GCHPPSGGCGWISRLPRTWTRVAASRWGLHMGWGQRPSTVLLPLPSSGRPCLHHLSPTSS 303
Query: 123 AVPTATGSGAPG 134
+P GAPG
Sbjct: 304 ILPPQAPGGAPG 315
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 34.3 bits (77), Expect = 0.096
Identities = 45/159 (28%), Positives = 61/159 (38%), Gaps = 34/159 (21%)
Query: 22 SSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPA-CRSAVAGTHPHWG 80
+ EWG GG+G ++ ALA L PG++ C A + +G P
Sbjct: 98 TQEWG-----GGTGTPQSPGPCAPQALA------SLLGPGKAGCRARLQGGSSGASPR-R 145
Query: 81 GSGGRLPALWLPV--GSSTRP-------------VEAWPRPSLISMVNVVFILPPGSAVP 125
GGR PA V G+ RP V P P+ + + V + PPG P
Sbjct: 146 LPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLP-PASLQPLRVPYFAPPGPHDP 204
Query: 126 TATGSG-----APGSSERATGPPALFSRGLAAKPRPLGP 159
T+ G G P S + P SR + A P P P
Sbjct: 205 TSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 33.1 bits (74), Expect = 0.21
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 55 GDTLSPGRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNV 114
G+ + +T P + A P + PA PVGS P A P P+ N
Sbjct: 5 GEATTTTTTTLPQAPTEAAAAAP-------QDPAPKSPVGSGA-PQAAAPAPAAHVAGN- 55
Query: 115 VFILPPGSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRS 167
P G A P ATG+ A S A G + LA K LG W +R+
Sbjct: 56 ----PGGDAAPAATGTAAAASLATAAGSEDAEKKVLATK--VLGTVKWFNVRN 102
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 33.1 bits (74), Expect = 0.21
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 55 GDTLSPGRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNV 114
G+ + +T P + A P + PA PVGS P A P P+ N
Sbjct: 5 GEATTTTTTTLPQAPTEAAAAAP-------QDPAPKSPVGSGA-PQAAAPAPAAHVAGN- 55
Query: 115 VFILPPGSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRS 167
P G A P ATG+ A S A G + LA K LG W +R+
Sbjct: 56 ----PGGDAAPAATGTAAAASLATAAGSEDAEKKVLATK--VLGTVKWFNVRN 102
>gi|110227613 centaurin, gamma 3 isoform a [Homo sapiens]
Length = 911
Score = 32.7 bits (73), Expect = 0.28
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 22/103 (21%)
Query: 120 PGSAVPTATGSGAPGSSERA---------------TGPPALFSRGLAAKPRPLGPSSWGQ 164
PG +P AT + APG+S RA TG P S RPL S+W
Sbjct: 463 PGKRLPRATPATAPGTSPRANGLSVERSNTQLGGGTGAPHSASSASLHSERPLSSSAWAG 522
Query: 165 LRSWARGWATPRCSLLNREE-----VSLGPREEEPLEEEAGVV 202
R G CS+ + ++ SL P + P A V+
Sbjct: 523 PR--PEGLHQRSCSVSSADQWSEATTSLPPGMQHPASGPAEVL 563
>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
Length = 623
Score = 32.7 bits (73), Expect = 0.28
Identities = 58/218 (26%), Positives = 76/218 (34%), Gaps = 41/218 (18%)
Query: 2 VLLP--PLLVLSRVGGARSPSVSSEW------GERWLSGGSGGVR-AVPDKVDNALAPST 52
+LLP PL+ + G P E GE + G GG+ A+ + A S
Sbjct: 319 LLLPDAPLVCVRTDGEGEDPECLGEGKMENPKGESLKNAGGGGLENALSKGREKCSAGSQ 378
Query: 53 PFGDTLSPGRSTCPACRSAVAGTHPHWGGSGGRLPAL------WLPVGSSTRPVEA---- 102
G PG++ + V G GG R AL W + + PV
Sbjct: 379 KAGSGEGPGKAGSEGLQQVV-GMKKSGGGDSERAAALSPEDETWEVLEEAPPPVFPLRPG 437
Query: 103 -------WPRPSL--ISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPALFSRGLAAK 153
W R +L ++ LPP S P+A + A A P L S LAA
Sbjct: 438 GLPGLCEWLRRALPPAQAGALLLALPPAS--PSAARTKAAALRAGAWRPALLAS--LAAA 493
Query: 154 PRPLGPSSW--------GQLRSWARGWATPRCSLLNRE 183
PL W GQL W RG +L RE
Sbjct: 494 AAPLPGLGWACDVALLRGQLAEWRRGLGLEPTALARRE 531
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 32.3 bits (72), Expect = 0.36
Identities = 38/137 (27%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 60 PGRSTCPACRSAVAGTHPHWGGSGGRLPA----LWLPVGSSTRPVEAWPRPSLISMVNVV 115
PG C A P WG R+ L PVG + PR +
Sbjct: 1267 PGGGLTFTCHCA----QPFWGPRCERVARSCRELQCPVGVPCQQTPRGPRCAC------- 1315
Query: 116 FILPPGSAVPTATG-SGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWAT 174
PPG + P+ G+P + A+ A G + +P PL P + A+GW
Sbjct: 1316 ---PPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPFF---RCACAQGWTG 1369
Query: 175 PRCSL-LNREEVSLGPR 190
PRC EVS PR
Sbjct: 1370 PRCEAPAAAPEVSEEPR 1386
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 32.3 bits (72), Expect = 0.36
Identities = 45/157 (28%), Positives = 55/157 (35%), Gaps = 26/157 (16%)
Query: 14 GGARSPSVSSEWGERWLSG--GSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSA 71
GGA P + GE G G G+ VP A G PG + P
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVP----GAKGEDGKDGSPGEPGANGLPGAAGE 484
Query: 72 VAGTHPHWGGSGGR--LPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATG 129
P + G G +P P G P A PR + P VP G
Sbjct: 485 RGA--PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE--------PGRDGVPGGPG 534
Query: 130 S-GAPGS-----SERATGPPALFSRGLAAKPRPLGPS 160
G PGS S+ GPP S+G + +P P GPS
Sbjct: 535 MRGMPGSPGGPGSDGKPGPPG--SQGESGRPGPPGPS 569
>gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo
sapiens]
Length = 203
Score = 32.3 bits (72), Expect = 0.36
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 24/93 (25%)
Query: 82 SGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVF----ILPPGSAVPTATGSGAP---- 133
S G PA W RP+EA P P ++ +F +L PGS + A GS AP
Sbjct: 6 SPGPAPACW-------RPLEAQPLPQQWALHAHLFPRRGLLGPGSRLGAAPGSPAPASRP 58
Query: 134 -GSSERATGPP--------ALFSRGLAAKPRPL 157
G A+G P + SR + RPL
Sbjct: 59 SGGQAHASGRPLPAWRLLLCMGSRSCTSSSRPL 91
>gi|239508872 PREDICTED: similar to Putative uncharacterized protein
FLJ46348 [Homo sapiens]
Length = 203
Score = 32.3 bits (72), Expect = 0.36
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 24/93 (25%)
Query: 82 SGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVF----ILPPGSAVPTATGSGAP---- 133
S G PA W RP+EA P P ++ +F +L PGS + A GS AP
Sbjct: 6 SPGPAPACW-------RPLEAQPLPQQWALHAHLFPRRGLLGPGSRLGAAPGSPAPASRP 58
Query: 134 -GSSERATGPP--------ALFSRGLAAKPRPL 157
G A+G P + SR + RPL
Sbjct: 59 SGGQAHASGRPLPAWRLLLCMGSRSCTSSSRPL 91
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 0.36
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 82 SGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAPGSSERATG 141
S G P L P SST P P P L S PP P G P A
Sbjct: 598 SAGPPPVLPPPSLSSTAPPPVMPLPPLSSAT------PPPGIPPPGVPQGIPPQLTAAPV 651
Query: 142 PPALFSRG--LAAKPRP 156
PPA S+ + KPRP
Sbjct: 652 PPASSSQSSQVPEKPRP 668
Score = 29.6 bits (65), Expect = 2.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 119 PPGSAVPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGP 159
PPGS P PGS R + PPA S + P P+ P
Sbjct: 1508 PPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPPVPIPP 1548
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 32.3 bits (72), Expect = 0.36
Identities = 41/136 (30%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 30 LSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVAGTHPHWGGSGGRLPAL 89
L+GG G + P V A F PG P V SGG
Sbjct: 157 LNGGPGSLPPEPPSVSQA------FPTLAGPGGLFPPRLADPVP--------SGGSSSPR 202
Query: 90 WLPVGSSTRPVEAWPRPSLISMVNVVF---ILPPGSAVPTATGSG-APGSSERATGPPAL 145
+LP G++ P A P P IS+ + S VP+ GS AP +S P L
Sbjct: 203 FLPRGNAPSP--APPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPL 260
Query: 146 FSRGLAAKPRPLGPSS 161
F A P PL PS+
Sbjct: 261 FHCSDALTPPPLPPSN 276
Score = 28.1 bits (61), Expect = 6.9
Identities = 59/232 (25%), Positives = 84/232 (36%), Gaps = 54/232 (23%)
Query: 31 SGGSGGVRAVPDKVDNALAPSTPFGDTLS---PGRSTCPACRSAVAGTH------PHWGG 81
SGGS R +P NA +P+ P +S P + A RS++ + PH
Sbjct: 195 SGGSSSPRFLPR--GNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASS 252
Query: 82 SGGRLPALW----------LPVGSS--TRPVEAWPRPSLISMVNVVFILPPGSAVPTATG 129
S P L+ LP ++ P A P + +++ +L P PT G
Sbjct: 253 SPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVLGPLGGAPTVEG 312
Query: 130 SGAP--------------------------GSSERATGPPALFSRGL-AAKPRPLGPSSW 162
GAP G RA P A S L ++ RP P +
Sbjct: 313 PGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTV 372
Query: 163 GQLRSWARGWATPRCSLLNREEVSLGPREEEPLEEEAGVVLPVLLVVLPLGT 214
+L RG TPR S R + L E + +LP +L +L L T
Sbjct: 373 FRLLE-GRGPQTPRRS---RPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPT 420
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 32.0 bits (71), Expect = 0.48
Identities = 43/152 (28%), Positives = 51/152 (33%), Gaps = 17/152 (11%)
Query: 59 SPGRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFIL 118
SP T P SA PH R P+ P S R P + F+
Sbjct: 150 SPREPTPPGRLSAPPRHGPH--PQSFRRPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLA 207
Query: 119 PPGSA---VPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATP 175
P GS +P+A + AP + RA A SRG RP S Q P
Sbjct: 208 PEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQ---------PP 258
Query: 176 RCSLLNREEVSLG---PREEEPLEEEAGVVLP 204
LL VSL R PL+ G P
Sbjct: 259 LARLLLASAVSLAASLARSPPPLQPRLGSASP 290
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 30 LSGGSGGVRAVPDKVDNALAPSTPF-----GDTLSPGRST-CPACRSAVAGTHPHWGGSG 83
L+G G + P +NA +P +P G +PG + P A THP G+
Sbjct: 38 LTGSWGPFQEEPQDTENAQSPGSPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQ 97
Query: 84 GRLPALWLPVGSST--------RPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAPGS 135
LP L P ST R PRP + F+ P AVP T + P
Sbjct: 98 PALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRA----LPFLSLPCQAVPAPTLTPTPPD 153
Query: 136 SERA 139
RA
Sbjct: 154 PPRA 157
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 32.0 bits (71), Expect = 0.48
Identities = 43/152 (28%), Positives = 51/152 (33%), Gaps = 17/152 (11%)
Query: 59 SPGRSTCPACRSAVAGTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFIL 118
SP T P SA PH R P+ P S R P + F+
Sbjct: 150 SPREPTPPGRLSAPPRHGPH--PQSFRRPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLA 207
Query: 119 PPGSA---VPTATGSGAPGSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWARGWATP 175
P GS +P+A + AP + RA A SRG RP S Q P
Sbjct: 208 PEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQ---------PP 258
Query: 176 RCSLLNREEVSLG---PREEEPLEEEAGVVLP 204
LL VSL R PL+ G P
Sbjct: 259 LARLLLASAVSLAASLARSPPPLQPRLGSASP 290
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 119 PPGSAVPTATGSGAP-GSSERATGPPALFSRGLAAKPRPLGPSSWGQLRSWAR----GWA 173
P G A+ A G G+ E+ GPP L + LG +W + R+ R GWA
Sbjct: 47 PAGPALLVAALEGPDAGTEEQGPGPPQLLVSRALLRLLALGSGAWVRARAVRRPPALGWA 106
Query: 174 TPRCSLLNREEVSLGPREEEPLEEEAGVVLPV 205
SL LGPR PL G LPV
Sbjct: 107 LLGTSL----GPGLGPR-VGPLLVRRGETLPV 133
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 14 GGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVA 73
GG + + ++E GE + G + A+ P P G L G + A
Sbjct: 36 GGEAAAAAAAERGEMKAAAGQ-------ESEGPAVGPPQPLGKELQDGAESNGGGGGGGA 88
Query: 74 GTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAP 133
G+ GG G P L G+ A PRP+L + + P G ++ G GAP
Sbjct: 89 GS----GGGPGAEPDLKNSNGN------AGPRPALNNNLTEP---PGGGGGGSSDGVGAP 135
Query: 134 GSSERATGPPALFSRG 149
S A PP + G
Sbjct: 136 PHSAAAALPPPAYGFG 151
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 32.0 bits (71), Expect = 0.48
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 14 GGARSPSVSSEWGERWLSGGSGGVRAVPDKVDNALAPSTPFGDTLSPGRSTCPACRSAVA 73
GG + + ++E GE + G + A+ P P G L G + A
Sbjct: 36 GGEAAAAAAAERGEMKAAAGQ-------ESEGPAVGPPQPLGKELQDGAESNGGGGGGGA 88
Query: 74 GTHPHWGGSGGRLPALWLPVGSSTRPVEAWPRPSLISMVNVVFILPPGSAVPTATGSGAP 133
G+ GG G P L G+ A PRP+L + + P G ++ G GAP
Sbjct: 89 GS----GGGPGAEPDLKNSNGN------AGPRPALNNNLTEP---PGGGGGGSSDGVGAP 135
Query: 134 GSSERATGPPALFSRG 149
S A PP + G
Sbjct: 136 PHSAAAALPPPAYGFG 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,215,764
Number of Sequences: 37866
Number of extensions: 743375
Number of successful extensions: 3240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 3146
Number of HSP's gapped (non-prelim): 242
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.