Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293313 Sequence: fasta or formatted (721aa) NCBI GI: 239753475
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         66           2
 C cysteine            2.6         19           1
 D aspartate           3.9         28           2
 E glutamate           3.9         28           2
 F phenylalanine       1.5         11           1
 G glycine            11.5         83           2
 H histidine           3.9         28           2
 I isoleucine          1.7         12           2
 K lysine              2.6         19           1
 L leucine            12.2         88           3
 M methionine          0.4          3           1
 N asparagine          1.5         11           1
 P proline             9.0         65           2
 Q glutamine           5.1         37           2
 R arginine            6.7         48           2
 S serine              8.5         61           5
 T threonine           6.4         46           2
 V valine              6.4         46           2
 W tryptophan          2.1         15           1
 Y tyrosine            1.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290927          1.000   PREDICTED: hypothetical protein XP_002346500 
LOC100289192          1.000   PREDICTED: hypothetical protein XP_002342357 
SF3A2                 0.012   splicing factor 3a, subunit 2 
ZNF469                0.011   zinc finger protein 469 
MYO15A                0.010   myosin XV 
SEC31A                0.010   SEC31 homolog A isoform 1 
SEC31A                0.010   SEC31 homolog A isoform 2 
SEC31A                0.010   SEC31 homolog A isoform 1 
MUC7                  0.010   mucin 7, secreted precursor 
MUC7                  0.010   mucin 7, secreted precursor 
MUC7                  0.010   mucin 7, secreted precursor 
SHROOM2               0.010   apical protein of Xenopus-like 
CASKIN2               0.009   cask-interacting protein 2 isoform b 
CASKIN2               0.009   cask-interacting protein 2 isoform a 
HCN4                  0.009   hyperpolarization activated cyclic nucleotide-gated p...
LOC646862             0.009   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.009   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.009   PREDICTED: hypothetical protein LOC646862 
LOC643376             0.008   hypothetical protein LOC643376 
FLJ10404              0.008   hypothetical protein LOC54540 
MAPK1IP1L             0.008   MAPK-interacting and spindle-stabilizing protein [Ho...
AEBP1                 0.008   adipocyte enhancer binding protein 1 precursor [Homo...
LOC100133885          0.008   PREDICTED: hypothetical protein 
COL5A3                0.008   collagen, type V, alpha 3 preproprotein 
SHANK1                0.008   SH3 and multiple ankyrin repeat domains 1 
MEGF9                 0.008   multiple EGF-like-domains 9 
XIRP1                 0.008   xin actin-binding repeat containing 1 
SLC16A2               0.008   solute carrier family 16, member 2 
C17orf74              0.008   hypothetical protein LOC201243 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press