Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239752141
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo
sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757650 PREDICTED: hypothetical protein [Homo sapiens] 276 3e-75
gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo ... 276 3e-75
gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo ... 276 3e-75
gi|193211610 dipeptidase 3 isoform b [Homo sapiens] 31 0.24
gi|193211608 dipeptidase 3 isoform a [Homo sapiens] 31 0.24
gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens] 29 1.2
gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens] 28 1.5
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 28 1.5
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 28 2.6
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 28 2.6
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 28 2.6
gi|209862785 anoctamin 2 [Homo sapiens] 27 3.4
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 27 4.5
gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo sa... 27 4.5
gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo sapi... 27 4.5
gi|239754173 PREDICTED: hypothetical protein [Homo sapiens] 27 5.8
gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo ... 27 5.8
gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo ... 27 5.8
gi|93277096 limbin [Homo sapiens] 27 5.8
gi|71051602 family with sequence similarity 108, member B1 isofo... 27 5.8
gi|71051600 family with sequence similarity 108, member B1 isofo... 27 5.8
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 26 7.6
gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [H... 26 9.9
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa... 26 9.9
gi|38371744 keratin associated protein 12-4 [Homo sapiens] 26 9.9
>gi|239757650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 276 bits (706), Expect = 3e-75
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
Query: 121 NINQHFGEI 129
NINQHFGEI
Sbjct: 121 NINQHFGEI 129
>gi|239752141 PREDICTED: hypothetical protein XP_002348152 [Homo
sapiens]
Length = 129
Score = 276 bits (706), Expect = 3e-75
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
Query: 121 NINQHFGEI 129
NINQHFGEI
Sbjct: 121 NINQHFGEI 129
>gi|239746671 PREDICTED: hypothetical protein XP_002343829 [Homo
sapiens]
Length = 129
Score = 276 bits (706), Expect = 3e-75
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER
Sbjct: 1 MRAGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKER 60
Query: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS
Sbjct: 61 KWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALYFWS 120
Query: 121 NINQHFGEI 129
NINQHFGEI
Sbjct: 121 NINQHFGEI 129
>gi|193211610 dipeptidase 3 isoform b [Homo sapiens]
Length = 512
Score = 31.2 bits (69), Expect = 0.24
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 19 RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70
RA T G +L SP+LF PG AL P L G + +G+ A
Sbjct: 60 RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111
>gi|193211608 dipeptidase 3 isoform a [Homo sapiens]
Length = 513
Score = 31.2 bits (69), Expect = 0.24
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 19 RAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKWQRKGKEMA 70
RA T G +L SP+LF PG AL P L G + +G+ A
Sbjct: 60 RAETTPGAPRALSTLGSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQA 111
>gi|169790825 odz, odd Oz/ten-m homolog 4 [Homo sapiens]
Length = 2769
Score = 28.9 bits (63), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 71 DRKWQGRENPLQLCCLLACPGTTIQLGGTLLPPCGTPAAACDSYALY 117
D W G + +++C C G + +GGT G AACD A +
Sbjct: 716 DPSWTGHDCSIEICAA-DCGGHGVCVGGTCRCEDGWMGAACDQRACH 761
>gi|55742695 sterile alpha motif domain containing 4B [Homo sapiens]
Length = 694
Score = 28.5 bits (62), Expect = 1.5
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 3 AGSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
AGS G G R +R+ P A G + L SP+ HAL P+L QG++ W
Sbjct: 561 AGSVGMGVARRTQRQFPMPPRALPPG-RMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLW 619
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 3 AGSQGGGQRTRARRRARAPTDAG 25
+GS GGGQR+R+ R+ +P +G
Sbjct: 484 SGSNGGGQRSRSHSRSASPFPSG 506
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 27.7 bits (60), Expect = 2.6
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28
G GG + RA RR RAP AGG G
Sbjct: 236 GEAGGERPARALRRPRAPGRAGGGG 260
>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
Length = 189
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 2 RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32
R G++GGGQR ++R ARAP G S S
Sbjct: 72 RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 27.7 bits (60), Expect = 2.6
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28
G GG + RA RR RAP AGG G
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265
>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
sapiens]
Length = 189
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 2 RAGSQGGGQRTRARRRARAPTDAGGLGYSLS 32
R G++GGGQR ++R ARAP G S S
Sbjct: 72 RGGARGGGQR-KSRSGARAPGQPAEAGLSAS 101
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 27.7 bits (60), Expect = 2.6
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLG 28
G GG + RA RR RAP AGG G
Sbjct: 241 GEAGGERPARALRRPRAPGRAGGGG 265
>gi|209862785 anoctamin 2 [Homo sapiens]
Length = 998
Score = 27.3 bits (59), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 5 SQGGGQRTRARRRARAPTDAGGLGYSLSLSS 35
S GGG R+R+R + AP+ LG +S S
Sbjct: 963 SPGGGDRSRSRAASSAPSGQSQLGSMMSSGS 993
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 27.3 bits (59), Expect = 3.4
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 17 RARAPTDAGG-----LGYSLSLSSPTLFLFPGCTHALVMPNLEQQG--KERKWQRKGKEM 69
R P AGG LG SL + L L A +P+ +G R+ G+ +
Sbjct: 400 RPEGPHGAGGCPMGELGMSLRVWGTLLPL----ERARSLPSWNSRGFCGARRGGGSGRFL 455
Query: 70 ADRKWQGRENPLQLCCLLACPGTTIQLGGTLLP-PCGTPAAACDSYALY 117
W+G L++CC A PG Q G+L P P G+ A + L+
Sbjct: 456 PGGGWRGARTKLRVCCTPA-PG---QSRGSLAPRPTGSAGRALAAARLF 500
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 26.9 bits (58), Expect = 4.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 23 DAGGLGYSLSLSSPTLFLFPG-------CTHALVMPNLEQQGKERKWQRKGKEMADRK 73
D+ GY + P L + P C H L+ LE+Q ++ K KE A+R+
Sbjct: 910 DSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERR 967
>gi|221136993 thioredoxin domain containing 14 isoform 2 [Homo
sapiens]
Length = 258
Score = 26.9 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 31 LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
L+ PTL LF G A+ P ++++G+ W
Sbjct: 175 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 206
>gi|7705726 thioredoxin domain containing 14 isoform 1 [Homo
sapiens]
Length = 296
Score = 26.9 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 31 LSLSSPTLFLFPGCTHALVMPNLEQQGKERKW 62
L+ PTL LF G A+ P ++++G+ W
Sbjct: 213 LTKQLPTLILFQGGKEAMRRPQIDKKGRAVSW 244
>gi|239754173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 26.6 bits (57), Expect = 5.8
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
G G R R RAR A L SL+ S P+ L +H ++PN++ ++
Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151
Query: 61 K 61
K
Sbjct: 152 K 152
>gi|239748693 PREDICTED: hypothetical protein XP_002346765 [Homo
sapiens]
Length = 170
Score = 26.6 bits (57), Expect = 5.8
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
G G R R RAR A L SL+ S P+ L +H ++PN++ ++
Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151
Query: 61 K 61
K
Sbjct: 152 K 152
>gi|239742716 PREDICTED: hypothetical protein XP_002342633 [Homo
sapiens]
Length = 170
Score = 26.6 bits (57), Expect = 5.8
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 4 GSQGGGQRTRARRRARAPTDAGGLGYSLSLSSPTLFL---FPGCTHALVMPNLEQQGKER 60
G G R R RAR A L SL+ S P+ L +H ++PN++ ++
Sbjct: 92 GETGASASLRVRVRARQSRGASSLCLSLTWSEPSWTLRAPLLKISHPNLLPNIQSAAIQQ 151
Query: 61 K 61
K
Sbjct: 152 K 152
>gi|93277096 limbin [Homo sapiens]
Length = 1308
Score = 26.6 bits (57), Expect = 5.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 47 ALVMPNLEQQGKERKWQRKGKEMADRKWQGRENPLQLCCLLACPGTTIQLGGTLL 101
A+ P L+QQ K RK + K K + + E+ + LC A ++ G LL
Sbjct: 895 AVAAPELQQQSKVRKSRSKSKSKGELLKKCIEDKIHLCEEQASEDLVEKVRGELL 949
>gi|71051602 family with sequence similarity 108, member B1 isoform
2 [Homo sapiens]
Length = 288
Score = 26.6 bits (57), Expect = 5.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112
+LCCL CP ++ L LPP T CD
Sbjct: 8 ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40
>gi|71051600 family with sequence similarity 108, member B1 isoform
1 [Homo sapiens]
Length = 293
Score = 26.6 bits (57), Expect = 5.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 QLCCLLACPGTTIQLGGTL--LPPCGTPAAACD 112
+LCCL CP ++ L LPP T CD
Sbjct: 8 ELCCLFCCPPCPGKIASKLAFLPPDPTYTLMCD 40
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 54 EQQGKERKWQRKGKEMADRKWQGRENPLQ 82
E+Q KER+ Q K ++ ++K QGR+ L+
Sbjct: 754 EKQEKEREKQEKERQKQEKKAQGRKLSLR 782
>gi|20070321 nicotinamide mononucleotide adenylyltransferase 1 [Homo
sapiens]
Length = 279
Score = 25.8 bits (55), Expect = 9.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 CTHALVMPNLEQQGKERKW 62
C H P LE+ G++RKW
Sbjct: 111 CDHQQNSPTLERPGRKRKW 129
>gi|17136078 VGF nerve growth factor inducible precursor [Homo
sapiens]
Length = 615
Score = 25.8 bits (55), Expect = 9.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 45 THALVMPNLEQQGKERKWQRKGKEMADR 72
TH L NLE G ER W+ E R
Sbjct: 189 THTLTRVNLESPGPERVWRASWGEFQAR 216
>gi|38371744 keratin associated protein 12-4 [Homo sapiens]
Length = 112
Score = 25.8 bits (55), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 85 CLLACPGTTIQLGGTLLPPCGTPAAACDS 113
C +ACPG+ + T PP G + C S
Sbjct: 10 CPMACPGSPCCVPSTCYPPEGYGTSCCCS 38
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,207
Number of Sequences: 37866
Number of extensions: 288404
Number of successful extensions: 865
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 28
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.