Guide to the Human Genome
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Name: LOC100292439 Sequence: fasta or formatted (129aa) NCBI GI: 239757650
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         12           3
 C cysteine            4.7          6           2
 D aspartate           2.3          3           1
 E glutamate           3.9          5           1
 F phenylalanine       3.1          4           1
 G glycine            12.4         16           3
 H histidine           1.6          2           1
 I isoleucine          2.3          3           1
 K lysine              3.9          5           1
 L leucine            11.6         15           2
 M methionine          2.3          3           1
 N asparagine          3.1          4           1
 P proline             7.0          9           2
 Q glutamine           7.0          9           2
 R arginine            8.5         11           3
 S serine              5.4          7           2
 T threonine           6.2          8           2
 V valine              0.8          1           1
 W tryptophan          2.3          3           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290392          1.000   PREDICTED: hypothetical protein XP_002348152 
LOC100286925          1.000   PREDICTED: hypothetical protein XP_002343829 
DPEP3                 0.024   dipeptidase 3 isoform b 
DPEP3                 0.024   dipeptidase 3 isoform a 
ODZ4                  0.016   odz, odd Oz/ten-m homolog 4 
SAMD4B                0.012   sterile alpha motif domain containing 4B 
PAF1                  0.012   Paf1, RNA polymerase II associated factor, homolog [...
LOC645321             0.012   PREDICTED: hypothetical protein 
LOC100290649          0.012   PREDICTED: hypothetical protein XP_002348220 
LOC645321             0.012   PREDICTED: hypothetical protein 
LOC100289318          0.012   PREDICTED: hypothetical protein XP_002343871 
LOC645321             0.012   PREDICTED: hypothetical protein 
ANO2                  0.008   anoctamin 2 
LOC100293005          0.008   PREDICTED: hypothetical protein 
RSF1                  0.008   remodeling and spacing factor 1 
TMX2                  0.008   thioredoxin domain containing 14 isoform 2 
TMX2                  0.008   thioredoxin domain containing 14 isoform 1 
LOC100293092          0.008   PREDICTED: hypothetical protein 
LOC100290333          0.008   PREDICTED: hypothetical protein XP_002346765 
LOC100287123          0.008   PREDICTED: hypothetical protein XP_002342633 
EVC2                  0.008   limbin 
FAM108B1              0.008   family with sequence similarity 108, member B1 isofo...
FAM108B1              0.008   family with sequence similarity 108, member B1 isofo...
TBC1D10B              0.004   TBC1 domain family, member 10B 
NMNAT1                0.004   nicotinamide mononucleotide adenylyltransferase 1 [H...
VGF                   0.004   VGF nerve growth factor inducible precursor 
KRTAP12-4             0.004   keratin associated protein 12-4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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