Guide to the Human Genome
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Name: LOC100290649 Sequence: fasta or formatted (189aa) NCBI GI: 239752392
Description:

PREDICTED: hypothetical protein XP_002348220

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         23           2
 C cysteine            2.6          5           1
 D aspartate           0.0          0           0
 E glutamate           3.7          7           1
 F phenylalanine       1.1          2           1
 G glycine            14.3         27           3
 H histidine           1.1          2           1
 I isoleucine          1.1          2           1
 K lysine              3.2          6           1
 L leucine             6.3         12           3
 M methionine          0.5          1           1
 N asparagine          1.6          3           1
 P proline            11.6         22           3
 Q glutamine           6.9         13           1
 R arginine           15.3         29           2
 S serine              9.0         17           2
 T threonine           4.8          9           1
 V valine              2.1          4           2
 W tryptophan          2.1          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348220 
LOC100289318          1.000   PREDICTED: hypothetical protein XP_002343871 
LOC100292088          0.049   PREDICTED: hypothetical protein XP_002346321 
SYN1                  0.046   synapsin I isoform Ia 
SYN1                  0.046   synapsin I isoform Ib 
SYNPO2L               0.043   synaptopodin 2-like isoform a 
SYNPO2L               0.043   synaptopodin 2-like isoform b 
DMKN                  0.041   dermokine isoform 3 precursor 
SCAF1                 0.041   SR-related CTD-associated factor 1 
COL3A1                0.041   collagen type III alpha 1 preproprotein 
LOC100130360          0.038   PREDICTED: hypothetical protein 
LOC100293812          0.038   PREDICTED: hypothetical protein 
LOC100289716          0.038   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.038   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.038   PREDICTED: hypothetical protein 
DMKN                  0.038   dermokine isoform 5 precursor 
CACNA1A               0.038   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.038   calcium channel, alpha 1A subunit isoform 3 
FLJ37078              0.038   hypothetical protein LOC222183 
C10orf47              0.035   hypothetical protein LOC254427 
LOC100291136          0.035   PREDICTED: hypothetical protein XP_002347630 
LOC100291206          0.035   PREDICTED: hypothetical protein XP_002347014 
LOC100287129          0.035   PREDICTED: hypothetical protein XP_002343480 
EN1                   0.035   engrailed homeobox 1 
LOC100134283          0.035   PREDICTED: hypothetical protein 
RICS                  0.035   Rho GTPase-activating protein isoform 1 
RICS                  0.035   Rho GTPase-activating protein isoform 2 
SRRM2                 0.035   splicing coactivator subunit SRm300 
LOC100288496          0.032   PREDICTED: hypothetical protein XP_002342747 
BBC3                  0.032   BCL2 binding component 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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