Guide to the Human Genome
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Name: LOC100293092 Sequence: fasta or formatted (170aa) NCBI GI: 239754173
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         11           2
 C cysteine            1.2          2           1
 D aspartate           4.1          7           1
 E glutamate           4.7          8           1
 F phenylalanine       2.4          4           2
 G glycine             6.5         11           2
 H histidine           0.6          1           1
 I isoleucine          4.7          8           1
 K lysine              5.9         10           1
 L leucine             8.8         15           2
 M methionine          0.6          1           1
 N asparagine          4.1          7           1
 P proline             5.9         10           2
 Q glutamine           7.1         12           2
 R arginine            7.6         13           1
 S serine             17.1         29           3
 T threonine           5.3          9           1
 V valine              5.3          9           2
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290333          1.000   PREDICTED: hypothetical protein XP_002346765 
LOC100287123          1.000   PREDICTED: hypothetical protein XP_002342633 
PCM1                  0.016   pericentriolar material 1 
LOC100128960          0.016   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.016   PREDICTED: similar to Putative paraneoplastic antig...
ERICH1                0.013   glutamate-rich 1 
TNKS1BP1              0.013   tankyrase 1-binding protein 1 
LOC100292237          0.010   PREDICTED: hypothetical protein 
LOC100289245          0.010   PREDICTED: hypothetical protein 
LOC100289245          0.010   PREDICTED: hypothetical protein XP_002342686 
SNX11                 0.010   sorting nexin 11 
SNX11                 0.010   sorting nexin 11 
CMIP                  0.010   c-Maf-inducing protein isoform C-mip 
CMIP                  0.010   c-Maf-inducing protein isoform Tc-mip 
NAGLU                 0.010   alpha-N-acetylglucosaminidase precursor 
MLPH                  0.010   melanophilin isoform 2 
MLPH                  0.010   melanophilin isoform 1 
STAU1                 0.010   staufen isoform b 
C10orf47              0.007   hypothetical protein LOC254427 
CWC22                 0.007   CWC22 spliceosome-associated protein homolog 
ZSCAN18               0.007   zinc finger and SCAN domain containing 18 isoform 2...
ZSCAN18               0.007   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.007   zinc finger and SCAN domain containing 18 isoform 3...
FLG                   0.007   filaggrin 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-a 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-d 
CDC20                 0.007   cell division cycle 20 
ZSCAN18               0.007   zinc finger and SCAN domain containing 18 isoform 1...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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