Guide to the Human Genome
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Name: FAM108B1 Sequence: fasta or formatted (288aa) NCBI GI: 71051602
Description:

family with sequence similarity 108, member B1 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {293aa} family with sequence similarity 108, member B1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         20           2
 C cysteine            4.2         12           2
 D aspartate           4.9         14           1
 E glutamate           5.9         17           1
 F phenylalanine       4.9         14           1
 G glycine             6.6         19           1
 H histidine           2.1          6           1
 I isoleucine          6.2         18           2
 K lysine              4.2         12           2
 L leucine             9.4         27           2
 M methionine          2.1          6           1
 N asparagine          4.2         12           2
 P proline             5.6         16           2
 Q glutamine           2.4          7           1
 R arginine            5.2         15           1
 S serine              9.4         27           2
 T threonine           4.9         14           1
 V valine              4.9         14           1
 W tryptophan          1.4          4           1
 Y tyrosine            4.9         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 108, member B1 isofo... 
FAM108B1              0.995   family with sequence similarity 108, member B1 isofo...
FAM108A1              0.798   hypothetical protein LOC81926 isoform 2 
FAM108C1              0.785   hypothetical protein LOC58489 
LOC100289252          0.775   PREDICTED: hypothetical protein XP_002342156 
FAM108A4              0.771   PREDICTED: hypothetical protein 
FAM108A1              0.756   hypothetical protein LOC81926 isoform 1 
FAM108A5              0.738   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.738   PREDICTED: family with sequence similarity 108, mem...
FAM108A5              0.738   PREDICTED: hypothetical protein LOC729495 
ABHD13                0.084   abhydrolase domain containing 13 
ABHD12B               0.072   abhydrolase domain containing 12B isoform c 
ABHD12B               0.072   abhydrolase domain containing 12B isoform b 
ABHD12                0.054   abhydrolase domain containing 12 isoform a 
ABHD12                0.054   abhydrolase domain containing 12 isoform b 
BAT5                  0.035   HLA-B associated transcript 5 
C20orf135             0.016   hypothetical protein LOC140701 
PPME1                 0.012   protein phosphatase methylesterase 1 
KCP                   0.009   cysteine rich BMP regulator 2 isoform 1 
LOC100294459          0.005   PREDICTED: similar to immunoglobulin lambda-like po...
ODF3                  0.005   outer dense fiber of sperm tails 3 
C13orf27              0.005   hypothetical protein LOC93081 
MFSD9                 0.005   major facilitator superfamily domain containing 9 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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