Guide to the Human Genome
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Name: LOC100291089 Sequence: fasta or formatted (120aa) NCBI GI: 239752118
Description:

PREDICTED: hypothetical protein XP_002348116

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         16           3
 C cysteine            3.3          4           1
 D aspartate           4.2          5           1
 E glutamate           1.7          2           1
 F phenylalanine       0.8          1           1
 G glycine            15.0         18           3
 H histidine           5.8          7           2
 I isoleucine          0.8          1           1
 K lysine              1.7          2           1
 L leucine             5.0          6           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            11.7         14           2
 Q glutamine           1.7          2           1
 R arginine           14.2         17           3
 S serine             13.3         16           2
 T threonine           3.3          4           1
 V valine              1.7          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348116 
LOC100292493          1.000   PREDICTED: hypothetical protein 
LOC100287393          1.000   PREDICTED: hypothetical protein XP_002344228 
PRR12                 0.052   proline rich 12 
ARX                   0.052   aristaless related homeobox 
GATA6                 0.052   GATA binding protein 6 
ONECUT2               0.048   one cut domain, family member 2 
LOC284988             0.048   PREDICTED: hypothetical protein 
BAT2                  0.048   HLA-B associated transcript-2 
LOC100288382          0.043   PREDICTED: hypothetical protein XP_002342213 
IQSEC2                0.043   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.043   IQ motif and Sec7 domain 2 isoform1 
TAF4                  0.043   TBP-associated factor 4 
LOC100293975          0.039   PREDICTED: hypothetical protein 
LOC100290812          0.039   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.039   PREDICTED: hypothetical protein XP_002343496 
ZNF318                0.039   zinc finger protein 318 
WTIP                  0.039   Wilms tumor 1 interacting protein 
HRNR                  0.039   hornerin 
LOC643355             0.039   PREDICTED: hypothetical protein 
LOC643355             0.039   PREDICTED: hypothetical protein 
LOC643355             0.039   PREDICTED: hypothetical protein 
FZD8                  0.039   frizzled 8 
LOC100293933          0.035   PREDICTED: hypothetical protein 
LOC100290206          0.035   PREDICTED: hypothetical protein XP_002347062 
LOC100287139          0.035   PREDICTED: hypothetical protein XP_002342915 
PPP1R10               0.035   protein phosphatase 1, regulatory subunit 10 
LOC100292062          0.035   PREDICTED: hypothetical protein XP_002346314 
LOC100292573          0.035   PREDICTED: hypothetical protein 
LOC100293375          0.035   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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