BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|118582284 msh homeobox 1 [Homo sapiens] (303 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|118582284 msh homeobox 1 [Homo sapiens] 600 e-172 gi|27886557 msh homeobox 2 [Homo sapiens] 268 6e-72 gi|4758168 distal-less homeobox 2 [Homo sapiens] 95 9e-20 gi|226437602 NK1 homeobox 2 [Homo sapiens] 94 2e-19 gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 94 2e-19 gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 94 2e-19 gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 94 2e-19 gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 89 5e-18 gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 87 2e-17 gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 86 3e-17 gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 86 4e-17 gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 85 7e-17 gi|94536800 empty spiracles homolog 1 [Homo sapiens] 84 1e-16 gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 83 3e-16 gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 82 4e-16 gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 82 4e-16 gi|89257348 homeo box HB9 [Homo sapiens] 82 4e-16 gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 82 6e-16 gi|147901462 brain specific homeobox [Homo sapiens] 82 8e-16 gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 82 8e-16 gi|157743259 H6 family homeobox 3 [Homo sapiens] 81 1e-15 gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 81 1e-15 gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 81 1e-15 gi|70608170 H6 family homeobox 2 [Homo sapiens] 81 1e-15 gi|4885187 distal-less homeobox 5 [Homo sapiens] 80 2e-15 gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 80 2e-15 gi|82659115 distal-less homeobox 6 [Homo sapiens] 80 3e-15 gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 80 3e-15 gi|4504465 homeobox B2 [Homo sapiens] 80 3e-15 gi|4885185 distal-less homeobox 3 [Homo sapiens] 79 5e-15 >gi|118582284 msh homeobox 1 [Homo sapiens] Length = 303 Score = 600 bits (1548), Expect = e-172 Identities = 303/303 (100%), Positives = 303/303 (100%) Query: 1 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 60 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP Sbjct: 1 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 60 Query: 61 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV Sbjct: 61 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120 Query: 121 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 180 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT Sbjct: 121 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 180 Query: 181 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 240 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM Sbjct: 181 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 240 Query: 241 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 300 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY Sbjct: 241 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 300 Query: 301 HLT 303 HLT Sbjct: 301 HLT 303 >gi|27886557 msh homeobox 2 [Homo sapiens] Length = 267 Score = 268 bits (684), Expect = 6e-72 Identities = 161/275 (58%), Positives = 189/275 (68%), Gaps = 25/275 (9%) Query: 31 QAPSAAAATAAAMGADEEGAKPK-VSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAA 89 + P+ A G E A+ + V S LPFSVEALM+D + P KE++ P+E +A Sbjct: 16 EGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPP--KEASPLPAESA-SA 72 Query: 90 GGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSP 149 G + +PL + GA +A S G L+K E A VK+E+ E + WMQ P Sbjct: 73 GATLRPLLL--SGHGAREAHSP---------GPLVKPFETASVKSENSE--DGAAWMQEP 119 Query: 150 -RFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSS 208 R+SPPP R +SP CTLRKHKTNRKPRTPFTT+QLLALERKFRQKQYLSIAERAEFSSS Sbjct: 120 GRYSPPP-RHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSS 178 Query: 209 LSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAG 268 L+LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML P++F L FP+ P Sbjct: 179 LNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPML-PSSFSLPFPISSP-----LQA 232 Query: 269 ASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT 303 AS+YGAS PF R LP+ PVGLY VGY MYHL+ Sbjct: 233 ASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS 267 >gi|4758168 distal-less homeobox 2 [Homo sapiens] Length = 328 Score = 94.7 bits (234), Expect = 9e-20 Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 37/287 (12%) Query: 24 PAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPS 83 P+GGGAG +++++++ KP+ SP+L P S A +S+ + Sbjct: 30 PSGGGAGPGGNSSSSSSLH--------KPQESPTL-PVST-----------ATDSSYYTN 69 Query: 84 EGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT 143 + A GG G P +G+ +S +S L A + +P Sbjct: 70 QQHPAGGGGGG--GSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTSYAPYGTS-- 125 Query: 144 PWMQSPRFSPPPARRLSPPACTLR-KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202 SP + P L P + K K RKPRT +++ QL AL+R+F++ QYL++ ER Sbjct: 126 ---SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPER 182 Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQE-----AELEKLKMAAKPML-PPAAFGLSFP 256 AE ++SL LT+TQVKIWFQNRR+K K++ + +E A+ P PP + S+ Sbjct: 183 AELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHPGASASPPCASPPVSAPASWD 242 Query: 257 LGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT 303 G P +A G G SG + P + + + Y YH T Sbjct: 243 FGVPQRMAGGGGPG-SGGSGAGSSGSSPSSAASAFLGN--YPWYHQT 286 >gi|226437602 NK1 homeobox 2 [Homo sapiens] Length = 310 Score = 93.6 bits (231), Expect = 2e-19 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 AG GAGQA + A +EE A+ P L + L R P A ALA E Sbjct: 74 AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 129 Query: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144 + GG P+ PPGS G Sbjct: 130 PCEDGGGG--PVRSPPGSPG---------------------------------------- 147 Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204 SP P RR P C R+ RT FT QL+ALE KFR +YLS+ ER Sbjct: 148 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 195 Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261 + SLSLTETQVKIWFQNRR K K+ P A G + GG P Sbjct: 196 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 239 Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293 A G G+ GP AL Y+A Sbjct: 240 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 271 >gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 93.6 bits (231), Expect = 2e-19 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 AG GAGQA + A +EE A+ P L + L R P A ALA E Sbjct: 96 AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151 Query: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144 + GG P+ PPGS G Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169 Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204 SP P RR P C R+ RT FT QL+ALE KFR +YLS+ ER Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217 Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261 + SLSLTETQVKIWFQNRR K K+ P A G + GG P Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261 Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293 A G G+ GP AL Y+A Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293 >gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 93.6 bits (231), Expect = 2e-19 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 AG GAGQA + A +EE A+ P L + L R P A ALA E Sbjct: 96 AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151 Query: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144 + GG P+ PPGS G Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169 Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204 SP P RR P C R+ RT FT QL+ALE KFR +YLS+ ER Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217 Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261 + SLSLTETQVKIWFQNRR K K+ P A G + GG P Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261 Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293 A G G+ GP AL Y+A Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293 >gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 93.6 bits (231), Expect = 2e-19 Identities = 88/272 (32%), Positives = 103/272 (37%), Gaps = 77/272 (28%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 AG GAGQA + A +EE A+ P L + L R P A ALA E Sbjct: 96 AGPGAGQASPLEGSEAE----EEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGE 151 Query: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144 + GG P+ PPGS G Sbjct: 152 PCEDGGGG--PVRSPPGSPG---------------------------------------- 169 Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204 SP P RR P C R+ RT FT QL+ALE KFR +YLS+ ER Sbjct: 170 -------SPRPRRRRLEPNCA-----KPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217 Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGG---PA 261 + SLSLTETQVKIWFQNRR K K+ P A G + GG P Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQN----------------PGADGAAQVGGGAPQPG 261 Query: 262 AVAAAAGASLYGASGPFQRAALPVAPVGLYTA 293 A G G+ GP AL Y+A Sbjct: 262 AAGGGGGGGSGGSPGPPGTGALHFQTFPSYSA 293 >gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] Length = 240 Score = 89.0 bits (219), Expect = 5e-18 Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 37/204 (18%) Query: 80 LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHF----------------SVGGL 123 LAP V AA PLG+ P + +P+ S RP GH S Sbjct: 21 LAPVPSVAAA----YPLGLSPTTAASPNLSYS-RPYGHLLSYPYTEPANPGDSYLSCQQP 75 Query: 124 LKLPEDALVKAESPEKPERTPWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTA 182 L + AE P++ E + PR SP P+ RR PA K RKPRT +++ Sbjct: 76 AALSQPLCGPAEHPQELEADS--EKPRLSPEPSERRPQAPA------KKLRKPRTIYSSL 127 Query: 183 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAEL 235 QL L ++F+ QYL++ ERA+ ++ L LT+TQVKIWFQN+R+K K+L QE + Sbjct: 128 QLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDF 187 Query: 236 EKLKMAAKPMLPPAAFGLSFPLGG 259 + P PP P G Sbjct: 188 PGRTFSVSPCSPPLPSLWDLPKAG 211 >gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] Length = 324 Score = 86.7 bits (213), Expect = 2e-17 Identities = 81/271 (29%), Positives = 119/271 (43%), Gaps = 30/271 (11%) Query: 52 PKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQA--AGGSAQPLGVPPGSLGAPDAP 109 P ++P+ PFSV+ ++ ++ + +A S ++A A S P + P+A Sbjct: 5 PALTPT--PFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYAGPEAA 62 Query: 110 SSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKH 169 + P +G + P A + P P P S R C L+K Sbjct: 63 APGLPELRAELG---RAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQKA 119 Query: 170 ----------------KTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE 213 + RKPR F+ AQ+ LER+F+Q++YLS ER + +S L LT Sbjct: 120 VELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS 179 Query: 214 TQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPL----GGPAAVAAAAGA 269 TQVKIWFQNRR K KR ++ + +L + P PP A ++ P+ G P +A A Sbjct: 180 TQVKIWFQNRRYKCKRQRQDQTLEL-VGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYA 238 Query: 270 SLYGAS-GPFQRAALPVAP-VGLYTAHVGYS 298 YG P+ A P P G GYS Sbjct: 239 PAYGVGLNPYGYNAYPAYPGYGGAACSPGYS 269 >gi|210147470 NK2 transcription factor related, locus 6 [Homo sapiens] Length = 219 Score = 86.3 bits (212), Expect = 3e-17 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 10/131 (7%) Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227 K + RKPR F+ AQ+LALER+F+Q++YLS ER +S+L LT TQVKIWFQNRR K Sbjct: 46 KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105 Query: 228 KRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAP 287 KR + + + L++A P+ P G + GA + P+ A P Sbjct: 106 KR--QRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPGAPAF--PSPYSAAVSP--- 158 Query: 288 VGLYTAHVGYS 298 Y+ + GYS Sbjct: 159 ---YSCYGGYS 166 >gi|126116581 retina and anterior neural fold homeobox [Homo sapiens] Length = 346 Score = 85.9 bits (211), Expect = 4e-17 Identities = 80/244 (32%), Positives = 108/244 (44%), Gaps = 31/244 (12%) Query: 71 RKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDA 130 R PG S L E + LG P GA A R LG + K PE+ Sbjct: 23 RSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLG--ARPACPKAPEEG 80 Query: 131 LVKAESPEKPERTPWMQSPR-FSP--PPARRLSP-----PACTLRK-------HKTNRKP 175 + P P P ++PR + P P R SP PA K K +R+ Sbjct: 81 S-EPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRN 139 Query: 176 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAEL 235 RT FTT QL LER F + Y + R E + ++L E +V++WFQNRRAK +R ++ E+ Sbjct: 140 RTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEV 199 Query: 236 EKLKMAAKPML-----PPAAFGLSFPLG-GPAAVAAAAGASLYGASGPFQRAALPVAPVG 289 +K+ P+L PP+A PLG GP + AG +L P + P P G Sbjct: 200 SSMKLQDSPLLSFSRSPPSA--TLSPLGAGPGSGGGPAGGAL-----PLESWLGPPLPGG 252 Query: 290 LYTA 293 TA Sbjct: 253 GATA 256 >gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] Length = 330 Score = 85.1 bits (209), Expect = 7e-17 Identities = 70/244 (28%), Positives = 100/244 (40%), Gaps = 50/244 (20%) Query: 27 GGAGQAPSAAAATAAAMGADEEGAKP---------KVSPSLLPFSVEALMADHRKPGAKE 77 GG G A + A A A G G + P ++V +A PG Sbjct: 58 GGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGG 117 Query: 78 SALAPSEGVQAAGGSAQPLGVP---------PGSLGAPDAPSSPRPLGHFSVGGLLKLPE 128 + + + AAG P P P + G P PS P G ++ GL Sbjct: 118 GSSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLT---- 173 Query: 129 DALVKAESPEKPERTPWMQS------PRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTA 182 PWM+S RF+ P + +PP +KPRT FT Sbjct: 174 --------------FPWMESNRRYTKDRFTGHPYQNRTPPK--------KKKPRTSFTRL 211 Query: 183 QLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 242 Q+ LE++F +++YL+ AERA + +L +T+ QVK WFQNRR K +R E E + A Sbjct: 212 QICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQA 271 Query: 243 KPML 246 +L Sbjct: 272 NRIL 275 >gi|94536800 empty spiracles homolog 1 [Homo sapiens] Length = 290 Score = 84.3 bits (207), Expect = 1e-16 Identities = 78/236 (33%), Positives = 101/236 (42%), Gaps = 22/236 (9%) Query: 2 APAADMTSLPLGVK--VEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLL 59 APAA P + +S K G G G A + A A EE +P Sbjct: 28 APAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLAAAASEEPLRPT------ 81 Query: 60 PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGH-- 117 AL H P A E+A AA G+ + L P L P+A + P H Sbjct: 82 -----ALNYPH--PSAAEAAFVSGFPAAAAAGAGRSLYGGP-ELVFPEAMNHPALTVHPA 133 Query: 118 FSVGGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKT-NRKP- 175 +G P + A+ + PW+ RF + P L H RKP Sbjct: 134 HQLGASPLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPK 193 Query: 176 --RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 229 RT F+ +QLL LER F + Y+ AER + + SLSL+ETQVK+WFQNRR K KR Sbjct: 194 RIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 249 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/41 (46%), Positives = 22/41 (53%) Query: 233 AELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYG 273 A E L+ A P+A +F G PAA AA AG SLYG Sbjct: 73 ASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYG 113 >gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] Length = 255 Score = 83.2 bits (204), Expect = 3e-16 Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 46/191 (24%) Query: 104 GAPDAPSSPRPL--GHFSVGGLLKL----PEDALVKAESPEKPERTPWMQS--------- 148 G P+ SP P+ GH+S+ L P+ A A S +P P++ S Sbjct: 24 GPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPY 83 Query: 149 -------PRFSPPPARRLSPPACTLRKH--------------KTNRKPRTPFTTAQLLAL 187 P + RL P K K RKPRT +++ QL AL Sbjct: 84 ISSVQSYPGSASLAQSRLEDPGADSEKSTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQAL 143 Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE---AELE-------K 237 R+F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K K+L + A LE + Sbjct: 144 NRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGR 203 Query: 238 LKMAAKPMLPP 248 A P +PP Sbjct: 204 ALSAGSPPVPP 214 >gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] Length = 814 Score = 82.4 bits (202), Expect = 4e-16 Identities = 79/268 (29%), Positives = 105/268 (39%), Gaps = 42/268 (15%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 + GG G +PSA + DE+ + + + E GA+ S + Sbjct: 540 SSGGGGHSPSADSGDEVP--DDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAA 597 Query: 85 GVQAAGGSAQPLGVPPGSL-GAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERT 143 A+ G+ PG +P AP P G + GG P+ A KP+R Sbjct: 598 ETDASPGATVDEAAAPGPRENSPVAPGPPG--GAAAPGGAGTTPQGTATAA----KPKRK 651 Query: 144 PWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERA 203 + P R+ RT FT QL+ALE KF+ +YLS+ ER Sbjct: 652 RTGSDSKSGKP------------------RRARTAFTYEQLVALENKFKATRYLSVCERL 693 Query: 204 EFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAV 263 + SLSLTETQVKIWFQNRR K K K A P G P GP Sbjct: 694 NLALSLSLTETQVKIWFQNRRTKWK--------KQNPGADTSAPTGGGGGPGPGAGP--- 742 Query: 264 AAAAGASLYGASGPFQRAALPVAPVGLY 291 G L G P + AP+G++ Sbjct: 743 ----GTGLPGGLSPLSPSPPMGAPLGMH 766 >gi|148746211 NK2 transcription factor related, locus 3 [Homo sapiens] Length = 364 Score = 82.4 bits (202), Expect = 4e-16 Identities = 59/145 (40%), Positives = 73/145 (50%), Gaps = 14/145 (9%) Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227 K ++ RKPR F+ AQ+ LER+F+Q++YLS ER +SSL LT TQVKIWFQNRR K Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203 Query: 228 KRLQEAELEKLKMAAKPMLP-----PAAFGLSFPLGGPAAVAAAA----GASLYG----- 273 KR ++ + +L A P P P P P+A A A GAS Y Sbjct: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFP 263 Query: 274 ASGPFQRAALPVAPVGLYTAHVGYS 298 A G AA A A YS Sbjct: 264 AYGYGNSAAAAAAAAAAAAAAAAYS 288 Score = 28.9 bits (63), Expect = 5.9 Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 27/97 (27%) Query: 2 APAADMTSLPLGVKVEDSAFG--KPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLL 59 A AA + S++G PAGGG G ++AA TA G P V+ S L Sbjct: 272 AAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNL 331 Query: 60 PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPL 96 G +GGSAQPL Sbjct: 332 -------------------------GGFGSGGSAQPL 343 >gi|89257348 homeo box HB9 [Homo sapiens] Length = 401 Score = 82.4 bits (202), Expect = 4e-16 Identities = 91/296 (30%), Positives = 120/296 (40%), Gaps = 57/296 (19%) Query: 2 APAADMTSLPLGVKVEDSAFGKPAGGGAGQAP-------SAAAATAAAMGADEEGAKPKV 54 A +A L L + +A G GGG G A S A++ A AD A+ Sbjct: 20 AASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPS 79 Query: 55 SPSLLPFSVEALMAD---------------------HRKPGAKESALAPSEGVQAAGGSA 93 P LL L H PGA +A A + AAGG A Sbjct: 80 PPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAA-AAGGLA 138 Query: 94 QPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTPWMQS--PRF 151 L P G+ G P+ GH V G A + + P P +Q P Sbjct: 139 LGLH-PGGAQGGAGLPAQAALYGH-PVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAH 196 Query: 152 SPPPAR------------RLSPPACTLRKH-------KTN-----RKPRTPFTTAQLLAL 187 P + R S L K ++N R+PRT FT+ QLL L Sbjct: 197 PADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLEL 256 Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAK 243 E +F+ +YLS +R E ++SL LTETQVKIWFQNRR K KR ++A+ + + A K Sbjct: 257 EHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEK 312 >gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] Length = 168 Score = 82.0 bits (201), Expect = 6e-16 Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 14/124 (11%) Query: 144 PWMQSPRFSPPPA-RRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202 P + PR SP P+ RR PA K RKPRT +++ QL L ++F+ QYL++ ER Sbjct: 22 PDSEKPRLSPEPSERRPQAPA------KKLRKPRTIYSSLQLQHLNQRFQHTQYLALPER 75 Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPPAAFGLSF 255 A+ ++ L LT+TQVKIWFQN+R+K K+L QE + + P PP Sbjct: 76 AQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL 135 Query: 256 PLGG 259 P G Sbjct: 136 PKAG 139 >gi|147901462 brain specific homeobox [Homo sapiens] Length = 233 Score = 81.6 bits (200), Expect = 8e-16 Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Query: 144 PWMQSPRFSPPPARRLSPPACTLR-KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202 P+ + P PA P L KH RK RT F+ +QL LE++F ++YLS ER Sbjct: 81 PYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPER 140 Query: 203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAA 262 E +++LSL+ETQVK WFQNRR K K+ ++ K P P + P G AA Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGS-----PRGSEAA 195 Query: 263 VAAAAGASLYGASGPF 278 AA A SL +GPF Sbjct: 196 TAAEARLSL--PAGPF 209 >gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] Length = 284 Score = 81.6 bits (200), Expect = 8e-16 Identities = 62/182 (34%), Positives = 85/182 (46%), Gaps = 20/182 (10%) Query: 73 PGAKESALAPSEGVQAAG----GSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPE 128 P + L S GV G + +PL VPP + GAP P P G GGL L Sbjct: 62 PAGSLAPLPGSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPG---PSGLGGAGGLAGLTF 118 Query: 129 DALVKAESPEKPERT----PWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQL 184 + K T P+ + R P R P +KPRT F+ +Q+ Sbjct: 119 PWMDSGRRFAKDRLTAALSPFSGTRRIGHPYQNRTPPK---------RKKPRTSFSRSQV 169 Query: 185 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP 244 L LER+F +++YL+ AERA + +L +T+ QVK WFQNRR K +R E E + A Sbjct: 170 LELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGR 229 Query: 245 ML 246 +L Sbjct: 230 LL 231 >gi|157743259 H6 family homeobox 3 [Homo sapiens] Length = 357 Score = 81.3 bits (199), Expect = 1e-15 Identities = 85/254 (33%), Positives = 110/254 (43%), Gaps = 61/254 (24%) Query: 24 PAGGGAGQAPSAAAA----TAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESA 79 PAGG + ++ A ++ A G D + +P LL + D + P Sbjct: 124 PAGGHLPRPEASEKALLRDSSPASGTDRDSPEP-----LLKADPDHKELDSKSPDEIILE 178 Query: 80 LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLP--EDALVKAESP 137 + SE + G +A PG+ GA SVG P ED AESP Sbjct: 179 ESDSEESKKEGEAA------PGAAGA-------------SVGAAAATPGAEDWKKGAESP 219 Query: 138 EKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYL 197 EK PAC RK KT RT F+ +Q+ LE F K+YL Sbjct: 220 EKK---------------------PAC--RKKKT----RTVFSRSQVFQLESTFDMKRYL 252 Query: 198 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM----AAKPMLPPAAFGL 253 S +ERA ++SL LTETQVKIWFQNRR K KR AELE + A + + P + Sbjct: 253 SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE 312 Query: 254 SFPLGGPAAVAAAA 267 + G AA AA A Sbjct: 313 NSAAEGAAAAAAGA 326 >gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] Length = 411 Score = 81.3 bits (199), Expect = 1e-15 Identities = 81/267 (30%), Positives = 100/267 (37%), Gaps = 40/267 (14%) Query: 25 AGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSE 84 + GG G +PSA + D+E +P EA G A Sbjct: 137 SSGGGGHSPSADSGDEVP---DDEDDDEDEAPE-----TEAARGAEEARGGGGGLGARGS 188 Query: 85 GVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKPERTP 144 G Q A + G AP P P+ GG A +P TP Sbjct: 189 GCQGAAETDASPGATVDEAAAP-GPRENSPVAQGPPGG-----------AAAPGGAGTTP 236 Query: 145 WMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAE 204 + P R S K R+ RT FT QL+ALE KF+ +YLS+ ER Sbjct: 237 QGTATAAKPKRKRTGSDS-----KSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLN 291 Query: 205 FSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVA 264 + SLSLTETQVKIWFQNRR K K K A P G P GP Sbjct: 292 LALSLSLTETQVKIWFQNRRTKWK--------KQNPGADTSAPTGGGGGPGPGAGP---- 339 Query: 265 AAAGASLYGASGPFQRAALPVAPVGLY 291 G L G P + AP+G++ Sbjct: 340 ---GTGLPGGLSPLSPSPPMGAPLGMH 363 >gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] Length = 291 Score = 81.3 bits (199), Expect = 1e-15 Identities = 75/250 (30%), Positives = 101/250 (40%), Gaps = 40/250 (16%) Query: 2 APAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGAD-EEGAKPKVSPSLLP 60 +P D P G S G P GG G + A+ A +GA E+ V+ SL P Sbjct: 26 SPDQDSAPAPRGPD-GASYLGGPPGGRPGATYPSLPASFAGLGAPFEDAGSYSVNLSLAP 84 Query: 61 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 120 V + A PGA PP P PS P S+ Sbjct: 85 AGVIRVPAHRPLPGAVP---------------------PPLPSALPAMPSVPTV---SSL 120 Query: 121 GGLLKLP----EDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPR 176 GG L P VK TP+ + R P R P +KPR Sbjct: 121 GG-LNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPP---------KRKKPR 170 Query: 177 TPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELE 236 T F+ Q+ LE++F +++YL+ AERA + SL +T+ QVK WFQNRR K +R E E Sbjct: 171 TSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEERE 230 Query: 237 KLKMAAKPML 246 + A ++ Sbjct: 231 AERQQASRLM 240 >gi|70608170 H6 family homeobox 2 [Homo sapiens] Length = 273 Score = 80.9 bits (198), Expect = 1e-15 Identities = 85/261 (32%), Positives = 107/261 (40%), Gaps = 17/261 (6%) Query: 17 EDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAK-PKVSPSLLPFSVEALMADHRKPGA 75 ED+ G PA GG + A E P SL S E D K A Sbjct: 5 EDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPA 64 Query: 76 KESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAE 135 P + G +P LG P P GGL + P + ++ Sbjct: 65 ---CFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSGP------GGLERTPFLSPSHSD 115 Query: 136 SPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQ 195 E+ ER SP P + R + +K RT F+ +Q+ LE F K+ Sbjct: 116 FKEEKERLLPAGSPS---PGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKR 172 Query: 196 YLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMA---AKPMLP-PAAF 251 YLS +ERA +SSL LTETQVK WFQNRR K KR AELE MA A+ ++ P F Sbjct: 173 YLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVF 232 Query: 252 GLSFPLGGPAAVAAAAGASLY 272 S L P + A A LY Sbjct: 233 RDSSLLRVPVPRSLAFPAPLY 253 >gi|4885187 distal-less homeobox 5 [Homo sapiens] Length = 289 Score = 80.1 bits (196), Expect = 2e-15 Identities = 39/86 (45%), Positives = 61/86 (70%), Gaps = 2/86 (2%) Query: 149 PRFSPPPARRLSPPACTL--RKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFS 206 P + P + ++ P + K K RKPRT +++ QL AL+R+F++ QYL++ ERAE + Sbjct: 112 PSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 171 Query: 207 SSLSLTETQVKIWFQNRRAKAKRLQE 232 +SL LT+TQVKIWFQN+R+K K++ + Sbjct: 172 ASLGLTQTQVKIWFQNKRSKIKKIMK 197 >gi|28912912 NK6 transcription factor related, locus 2 [Homo sapiens] Length = 277 Score = 80.1 bits (196), Expect = 2e-15 Identities = 73/236 (30%), Positives = 106/236 (44%), Gaps = 42/236 (17%) Query: 33 PSAAAATAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESALAPSEGVQAAG-- 90 P A ++A + A A+ K S L P++++ G K AL G Sbjct: 6 PGAFVLSSAPLAALHNMAEMKTS--LFPYALQG------PAGFKAPALGGLGAQLPLGTP 57 Query: 91 -GSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVK------AESPEKP--- 140 G + LG P G+ G PR G S G+ P A+ + AE P +P Sbjct: 58 HGISDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIF 117 Query: 141 -----ERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQ 195 + PW + PR + P +P L K + R F+ Q+ ALE+ F Q + Sbjct: 118 WPGVVQGAPW-RDPRLAGP-----APAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTK 171 Query: 196 YLSIAERAEFSSSLSLTETQVKIWFQNRRAK-----------AKRLQEAELEKLKM 240 YL+ ERA + SL +TE+QVK+WFQNRR K AK+ Q+++ EKLK+ Sbjct: 172 YLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKV 227 >gi|82659115 distal-less homeobox 6 [Homo sapiens] Length = 265 Score = 79.7 bits (195), Expect = 3e-15 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 16/105 (15%) Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227 K K RKPRT +++ QL AL +F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K Sbjct: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194 Query: 228 KRLQEA-----ELEKLKMAA-----KPMLPP------AAFGLSFP 256 K+L + E + L+ +A P LPP +A G+S P Sbjct: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMP 239 >gi|116805350 homeo box (H6 family) 1 [Homo sapiens] Length = 348 Score = 79.7 bits (195), Expect = 3e-15 Identities = 59/131 (45%), Positives = 71/131 (54%), Gaps = 17/131 (12%) Query: 173 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 232 +K RT F+ +Q+ LE F K+YLS AERA ++SL LTETQVKIWFQNRR K KR Sbjct: 204 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 263 Query: 233 AELEKL--------KMAAKPML----PPAAFGLSFPLGGPAAVAAAAGA---SLYGASG- 276 AELE ++ P+L PPAA P P +A AA A L G SG Sbjct: 264 AELEAASLSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGA 323 Query: 277 -PFQRAALPVA 286 + AA P A Sbjct: 324 LAYPLAAFPAA 334 >gi|4504465 homeobox B2 [Homo sapiens] Length = 356 Score = 79.7 bits (195), Expect = 3e-15 Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 25/203 (12%) Query: 72 KPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDAL 131 +PGA + P +A G A P PP AP AP P + Sbjct: 57 QPGAS-TLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPW-----------------M 98 Query: 132 VKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTN----RKPRTPFTTAQLLAL 187 + +S +KP ++ SP S PA + PA L + R+ RT +T QLL L Sbjct: 99 KEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLEL 158 Query: 188 ERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLP 247 E++F +YL R E ++ L LTE QVK+WFQNRR K KR + + +P P Sbjct: 159 EKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ---HREPPDGEPACP 215 Query: 248 PAAFGLSFPLGGPAAVAAAAGAS 270 A + P PAA AS Sbjct: 216 GALEDICDPAEEPAASPGGPSAS 238 >gi|4885185 distal-less homeobox 3 [Homo sapiens] Length = 287 Score = 79.0 bits (193), Expect = 5e-15 Identities = 37/63 (58%), Positives = 51/63 (80%) Query: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227 K K RKPRT +++ QL AL+R+F++ QYL++ ERAE ++ L LT+TQVKIWFQNRR+K Sbjct: 125 KPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKF 184 Query: 228 KRL 230 K+L Sbjct: 185 KKL 187 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.129 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,108,975 Number of Sequences: 37866 Number of extensions: 820207 Number of successful extensions: 6861 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 294 Number of HSP's successfully gapped in prelim test: 459 Number of HSP's that attempted gapping in prelim test: 5140 Number of HSP's gapped (non-prelim): 2032 length of query: 303 length of database: 18,247,518 effective HSP length: 102 effective length of query: 201 effective length of database: 14,385,186 effective search space: 2891422386 effective search space used: 2891422386 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.