Guide to the Human Genome
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Name: PEX5 Sequence: fasta or formatted (631aa) NCBI GI: 21361204
Description:

peroxisomal biogenesis factor 5 isoform b

Referenced in:

Peroxisomes
Tetratricopeptide Domains

Other entries for this name:
alt prot [654aa] peroxisomal biogenesis factor 5 isoform a
alt prot [602aa] peroxisomal biogenesis factor 5 isoform c
alt prot [639aa] peroxisomal biogenesis factor 5 isoform d
alt prot [639aa] peroxisomal biogenesis factor 5 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         78           2
 C cysteine            1.0          6           1
 D aspartate           6.3         40           2
 E glutamate          10.1         64           3
 F phenylalanine       3.5         22           1
 G glycine             6.7         42           2
 H histidine           1.4          9           1
 I isoleucine          1.9         12           1
 K lysine              2.9         18           1
 L leucine            12.0         76           2
 M methionine          2.1         13           1
 N asparagine          3.3         21           1
 P proline             5.2         33           2
 Q glutamine           6.5         41           3
 R arginine            5.4         34           2
 S serine              6.3         40           1
 T threonine           4.1         26           2
 V valine              4.3         27           1
 W tryptophan          2.1         13           1
 Y tyrosine            2.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 5 isoform b 
PEX5                  0.994   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.994   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.986   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.922   peroxisomal biogenesis factor 5 isoform c 
PEX5L                 0.281   peroxisomal biogenesis factor 5-like 
OGT                   0.032   O-linked GlcNAc transferase isoform 2 
OGT                   0.032   O-linked GlcNAc transferase isoform 1 
TMTC1                 0.029   transmembrane and tetratricopeptide repeat containin...
CDC27                 0.024   cell division cycle protein 27 isoform 1 
CDC27                 0.024   cell division cycle protein 27 isoform 2 
TMTC3                 0.019   transmembrane and tetratricopeptide repeat containi...
TTC31                 0.019   tetratricopeptide repeat domain 31 
TTC27                 0.018   tetratricopeptide repeat domain 27 
TTC28                 0.016   tetratricopeptide repeat domain 28 
BBS4                  0.015   Bardet-Biedl syndrome 4 
TTC37                 0.014   tetratricopeptide repeat domain 37 
TMTC4                 0.014   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.014   transmembrane and tetratricopeptide repeat containi...
CDC23                 0.012   cell division cycle protein 23 
GTF3C3                0.012   general transcription factor IIIC, polypeptide 3, 102...
SGTA                  0.012   small glutamine-rich tetratricopeptide 
SGTB                  0.011   small glutamine-rich tetratricopeptide repeat (TPR)-...
STUB1                 0.011   STIP1 homology and U-box containing protein 1 
TTC6                  0.011   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.011   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.011   PREDICTED: chromosome 14 open reading frame 25 [Hom...
RGPD1                 0.011   RANBP2-like and GRIP domain containing 1 
RGPD3                 0.010   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.010   RANBP2-like and GRIP domain containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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