Guide to the Human Genome
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Search of human proteins with 239751748

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751748 PREDICTED: hypothetical protein [Homo sapiens]
         (217 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751748 PREDICTED: hypothetical protein [Homo sapiens]           450   e-127
gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo ...   450   e-127
gi|239757240 PREDICTED: hypothetical protein [Homo sapiens]           449   e-127
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ...    39   0.003
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b...    39   0.003
gi|222537714 taxilin beta [Homo sapiens]                               38   0.008
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    36   0.029
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    36   0.029
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     35   0.064
gi|119508426 alpha 3 type IX collagen [Homo sapiens]                   35   0.064
gi|153792074 proline rich 12 [Homo sapiens]                            35   0.064
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               34   0.084
gi|239757601 PREDICTED: hypothetical protein [Homo sapiens]            34   0.11 
gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo ...    34   0.11 
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    34   0.11 
gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo ...    34   0.11 
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    34   0.11 
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      34   0.11 
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]       34   0.11 
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       34   0.11 
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       34   0.11 
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       34   0.11 
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]       34   0.11 
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]       34   0.11 
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]       34   0.11 
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]       34   0.11 
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]       34   0.11 
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]       34   0.11 
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]        34   0.11 
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]        34   0.11 

>gi|239751748 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score =  450 bits (1158), Expect = e-127
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG
Sbjct: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
           SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120

Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
           HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180

Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
           LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217


>gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo
           sapiens]
          Length = 217

 Score =  450 bits (1158), Expect = e-127
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG
Sbjct: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
           SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120

Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
           HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180

Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
           LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217


>gi|239757240 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score =  449 bits (1155), Expect = e-127
 Identities = 216/217 (99%), Positives = 217/217 (100%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMA+WSLAMSSGWKTWAPREG
Sbjct: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMANWSLAMSSGWKTWAPREG 60

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120
           SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE
Sbjct: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLEVACGIDILGLGDVCASLEAATGPVEE 120

Query: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180
           HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG
Sbjct: 121 HGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIGHHEAG 180

Query: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217
           LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL
Sbjct: 181 LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQL 217


>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
           [Homo sapiens]
          Length = 730

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 72  QRMTCGVPNVACEAQEHVPTSLE--------VACGIDILGLGDVCASLEAATGPVEEHGP 123
           +RM  G+  +     +H+ +S+E        +  G++ +G G +   LE    P++  G 
Sbjct: 448 ERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAG-MGFGLERMAAPIDRVGQ 506

Query: 124 LGSR---GQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVA--------------AQQR 166
              R   G +++GPA++  GLS+   VP        + GPV                ++ 
Sbjct: 507 TIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERM 566

Query: 167 GAARLGGIGHHEAGLP-FQPQELGVIGPQQ-PPRGQGL-RWGQAQAGTG 212
           G  R+G       GL       L  +GP   P  G G+ R G A  G G
Sbjct: 567 GLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGG 615


>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
           [Homo sapiens]
          Length = 691

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 29/169 (17%)

Query: 72  QRMTCGVPNVACEAQEHVPTSLE--------VACGIDILGLGDVCASLEAATGPVEEHGP 123
           +RM  G+  +     +H+ +S+E        +  G++ +G G +   LE    P++  G 
Sbjct: 409 ERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAG-MGFGLERMAAPIDRVGQ 467

Query: 124 LGSR---GQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVA--------------AQQR 166
              R   G +++GPA++  GLS+   VP        + GPV                ++ 
Sbjct: 468 TIERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERM 527

Query: 167 GAARLGGIGHHEAGLP-FQPQELGVIGPQQ-PPRGQGL-RWGQAQAGTG 212
           G  R+G       GL       L  +GP   P  G G+ R G A  G G
Sbjct: 528 GLERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGG 576


>gi|222537714 taxilin beta [Homo sapiens]
          Length = 684

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 3   AKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSL-AMSSGWKTWAPREGS 61
           A+A G + A  PS  S S + L    +   L   +    ASW   A +SG    AP E S
Sbjct: 563 AEAEGGSDAEPPSKASNSPAGLGAETQCEGLPVGAQADQASWKPEAEASGQAPQAPTEAS 622

Query: 62  CCSRRNMEPSQRMTCGVPNVACEAQEHV 89
                     Q+M   VP  AC A+EHV
Sbjct: 623 L---------QKMEADVPAPACAAEEHV 641


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
           GP    GP G+RG Q    A    G + RV  PG          P  + + G     G  
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-- 933

Query: 176 HHEAGLPFQPQELGVIGPQQPP--RGQGLRWGQAQAGTGPGPQ 216
             ++G P +  E G+ GP  PP  +G+    G + A   PGPQ
Sbjct: 934 --DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 974



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--GPVAAQQRGAARLGG 173
           GP  E GP G RG +    A   +G       PG           GP       AA++ G
Sbjct: 126 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG 185

Query: 174 IGHHEAG---LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
               +AG   L      +G +GP+ PP   G           PGPQ
Sbjct: 186 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG----------APGPQ 221



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
           GP  + GP G+ G+         QG   +  V G          P  A ++G     G+ 
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL- 628

Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGP 215
               GLP +  E G  GP  P    G R  Q   G       PGP
Sbjct: 629 ---RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 670



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 109 ASLEAATGPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
           A  + A GP  E G  G+RG+      +GP  + +G       PG   L   K  P    
Sbjct: 476 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE-RGAPGNRGFPGQDGLAGPKGAP---G 531

Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
           +RG + L G      G P +P E G+ G +      G    Q + G    P
Sbjct: 532 ERGPSGLAG-PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 581


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 35.8 bits (81), Expect = 0.029
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
           GP    GP G+RG Q    A    G + RV  PG          P  + + G     G  
Sbjct: 807 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG-- 864

Query: 176 HHEAGLPFQPQELGVIGPQQPP--RGQGLRWGQAQAGTGPGPQ 216
             ++G P +  E G+ GP  PP  +G+    G + A   PGPQ
Sbjct: 865 --DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 905



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--GPVAAQQRGAARLGG 173
           GP  E GP G RG +    A   +G       PG           GP       AA++ G
Sbjct: 57  GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAG 116

Query: 174 IGHHEAG---LPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
               +AG   L      +G +GP+ PP   G           PGPQ
Sbjct: 117 GFDEKAGGAQLGVMQGPMGPMGPRGPPGPAG----------APGPQ 152



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 29/105 (27%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
           GP  + GP G+ G+         QG   +  V G          P  A ++G     G+ 
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL- 559

Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGP 215
               GLP +  E G  GP  P    G R  Q   G       PGP
Sbjct: 560 ---RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP 601



 Score = 27.7 bits (60), Expect = 7.8
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 109 ASLEAATGPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
           A  + A GP  E G  G+RG+      +GP  + +G       PG   L   K  P    
Sbjct: 407 AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE-RGAPGNRGFPGQDGLAGPKGAP---G 462

Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
           +RG + L G      G P +P E G+ G +      G    Q + G    P
Sbjct: 463 ERGPSGLAG-PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 512


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 14/114 (12%)

Query: 111 LEAATGPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAAR 170
           L   +GPV   G  G+ G      A  L G++    +PG + +     GPV A     AR
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI----PGPVGAAGATGAR 342

Query: 171 LGGIGHH-------EAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG--PGP 215
            G +G         E+G   +P   G  GP  P   +G R    +AG+   PGP
Sbjct: 343 -GLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 25/112 (22%)

Query: 108 CASLEAAT---GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQ 164
           C SL+  T   GP  + GP G RG    GP  +  G       PG         GP    
Sbjct: 22  CQSLQEETVRKGPAGDRGPRGERGPP--GPPGR-DGEDGPTGPPGPPG----PPGPPGLG 74

Query: 165 QRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGPQ 216
              AA+  G      G+   P  +G++GP+ PP   G           PGPQ
Sbjct: 75  GNFAAQYDG-----KGVGLGPGPMGLMGPRGPPGAAG----------APGPQ 111



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 12/106 (11%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGGIG 175
           GP    GP GSRG           G + R   PG   +      P  A + G     G  
Sbjct: 766 GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRG-- 823

Query: 176 HHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG-----PGPQ 216
             + G   +  E+G +G   PP   G +    +AGT      PGPQ
Sbjct: 824 --DQGPVGRTGEVGAVG---PPGFAGEKGPSGEAGTAGPPGTPGPQ 864



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 122 GPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAA----RLGGIGHH 177
           G +G RG      A   QG       PG       + GP  A  RG A    + G  GH 
Sbjct: 94  GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPG----QTGPAGA--RGPAGPPGKAGEDGH- 146

Query: 178 EAGLPFQPQELGVIGPQ 194
             G P +P E GV+GPQ
Sbjct: 147 -PGKPGRPGERGVVGPQ 162



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 24/111 (21%)

Query: 112 EAATGPVEEHGPLGSRGQQ----------------QVGPAVQLQGLSVRVPVPGVQALVR 155
           + + GPV   GP+GS G                    GPA    G    V +PG+   V 
Sbjct: 237 DGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP-AGPRGEVGLPGLSGPVG 295

Query: 156 VKAGPVA---AQQRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLR 203
               P A      +GAA L G+    AG P  P   G+ GP       G R
Sbjct: 296 PPGNPGANGLTGAKGAAGLPGV----AGAPGLPGPRGIPGPVGAAGATGAR 342



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 116 GPVEEHGPLGSRGQQ----QVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARL 171
           GP  + GP+G  G       +GPA   +G    +  PG +       GP     +     
Sbjct: 460 GPAGKEGPVGLPGIDGRPGPIGPA-GARGEPGNIGFPGPK-------GPTGDPGKN---- 507

Query: 172 GGIGHHE-AGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
           G  GH   AG    P   G  G Q PP  QG++ G+ + G  PGP
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGP-PGP 551


>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
          Length = 684

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 25/126 (19%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRG-------A 168
           GP  E G  G  GQ  V      +G + R   PG +    +   P  A  +G       A
Sbjct: 295 GPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRA 354

Query: 169 ARLGGIGHH-------EAGLPFQPQELG------VIGPQQPPRGQGLRWGQAQAGTG--- 212
             LG  G         +AG+P +  E G       +GPQ PP   G+R  Q Q G+    
Sbjct: 355 GELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDP 414

Query: 213 --PGPQ 216
             PGPQ
Sbjct: 415 GLPGPQ 420



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 111 LEAATGPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALV--RVKAGPVAAQQRGA 168
           L    GP    G  G  G+  +     + GL+ R   PG +     R   GP      G 
Sbjct: 57  LPGPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPP-----GP 111

Query: 169 ARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTG--PGP 215
             LGG      GLP  P E GV G   PP G GLR     +G    PGP
Sbjct: 112 PGLGG-----KGLPGPPGEAGVSG---PPGGIGLRGPPGPSGLPGLPGP 152



 Score = 30.0 bits (66), Expect = 1.6
 Identities = 34/94 (36%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 116 GPVEEHGPLGSRGQQQV-GPAVQLQGLSVRVPVPGVQALVRVKAGPVAAQQRGAARLGG- 173
           GP    GP G+ G Q V GP   L GL     VPG+     V  G  A++QR     GG 
Sbjct: 475 GPKGTQGPNGTSGVQGVPGPPGPL-GLQGVPGVPGITGKPGV-PGKEASEQRIRELCGGM 532

Query: 174 IGHHEAGL------PFQPQELGVIGPQQPPRGQG 201
           I    A L      P  P  +G  GP  PP   G
Sbjct: 533 ISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPG 566


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQGL-------------SVRVPVPGVQALVRVKA-- 158
           ATGP    G     G     P +Q  G              + R P P   A  + ++  
Sbjct: 362 ATGPEAAGGGGAGGGGGGYRPIIQSPGYKTGKGGYGAAAGGATRPPPPRSTATPKCQSLG 421

Query: 159 GPVAAQQRGAARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQ 208
           GP AA   G A   G    +A  P QPQ  G++GPQ    GQG   GQAQ
Sbjct: 422 GPAAAYATGKASGAGGAGGQAYSPGQPQ--GLLGPQ--AYGQGFGGGQAQ 467


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 34.3 bits (77), Expect = 0.084
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 116 GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKAG----PVAAQQRGAARL 171
           GPV + GP GSRG   +     L G      +PGV    R K G    P    +RG   L
Sbjct: 745 GPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPG-KRGKMGMPGFPGVFGERGPPGL 803

Query: 172 GGIGHHEAGLPFQP------QELGVIGPQQPPRGQGLR 203
            G    E GLP  P       +LGV+GP   P  +G++
Sbjct: 804 DG-NPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMK 840



 Score = 33.5 bits (75), Expect = 0.14
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 116  GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALV--------RVKAGPVAAQQRG 167
            GP  + G  G +G+     A   QG    + VPG             R   GP  A    
Sbjct: 1240 GPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAP--- 1296

Query: 168  AARLGGIGHHEAGLPFQPQELGVIGPQQPPRGQGLRWGQAQAGTGPGP 215
              R+G  G  E GL       G++GP  PP  +G +  Q + G   GP
Sbjct: 1297 -GRMGAQG--EPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGP 1341



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 18/115 (15%)

Query: 116  GPVEEHGPLGSRGQQQVGPAVQLQGLSVRVPVPGVQALVRVKA--------GPVAAQQRG 167
            GP  + GP G  G      A  L+G   R   PG   L  VK         GPV  +Q  
Sbjct: 937  GPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPV-GEQGF 995

Query: 168  AARLGGIGHHEAGLPFQPQELGVIGPQ--QPPRGQ----GLRWGQAQAGTGPGPQ 216
               +G +G  E G+  +  + G++GP     P+G     G+  G    G  PGPQ
Sbjct: 996  MGFIGLVG--EPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGE-PGPQ 1047


>gi|239757601 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           +W   +    + GP +CS +   L GS     L+A S+ R A+ S    + WK  +P   
Sbjct: 86  LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
              SR+ M   + + C   +     +E + T  E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175


>gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo
           sapiens]
          Length = 308

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           +W   +    + GP +CS +   L GS     L+A S+ R A+ S    + WK  +P   
Sbjct: 86  LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
              SR+ M   + + C   +     +E + T  E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 3   AKARGATRAGGPSSCSGSR----SPLSGS-RRRTWLKAKSLPRMASWSLAMSSGWKTWAP 57
           A  RGA RAG  ++  G R    +PLSG  ++ ++L+ K+LPR+ S   A +       P
Sbjct: 228 APRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALP 287

Query: 58  REG 60
           R G
Sbjct: 288 RSG 290


>gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo
           sapiens]
          Length = 452

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 1   MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
           +W   +    + GP +CS +   L GS     L+A S+ R A+ S    + WK  +P   
Sbjct: 86  LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141

Query: 61  SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
              SR+ M   + + C   +     +E + T  E
Sbjct: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 3   AKARGATRAGGPSSCSGSR----SPLSGS-RRRTWLKAKSLPRMASWSLAMSSGWKTWAP 57
           A  RGA RAG  ++  G R    +PLSG  ++ ++L+ K+LPR+ S   A +       P
Sbjct: 228 APRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLPRLLSMPSAAARPCGAALP 287

Query: 58  REG 60
           R G
Sbjct: 288 RSG 290


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521


>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
          Length = 610

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 371 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 429

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 430 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 470


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 360 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 418

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 419 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 459


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 362 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 420

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 421 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 461


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 365 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 423

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 424 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 464


>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
          Length = 668

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 400 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 458

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 459 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 499


>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
          Length = 664

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 369 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 427

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 428 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 468


>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
          Length = 690

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521


>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
          Length = 691

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521


>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
          Length = 686

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 403 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 461

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 462 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 502


>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
          Length = 676

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 381 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 439

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 440 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 480


>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
          Length = 688

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 393 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 451

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 452 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 492


>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
          Length = 703

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 14/101 (13%)

Query: 114 ATGPVEEHGPLGSRGQQQVGPAVQLQG-----------LSVRVPVPGVQALVRVKAGPVA 162
           A G     GP GS+G+   G  V   G           L++  P PG+   +     P  
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGI 480

Query: 163 AQQRGAARLGGIGHH--EAGLPFQPQELGVIGPQQPPRGQG 201
             Q+G   L G   H  E G   +P ++G  GPQ PP   G
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDG 521


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,671,293
Number of Sequences: 37866
Number of extensions: 555642
Number of successful extensions: 2357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 2029
Number of HSP's gapped (non-prelim): 421
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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