Guide to the Human Genome
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Name: LOC100293121 Sequence: fasta or formatted (217aa) NCBI GI: 239757240
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         24           2
 C cysteine            3.2          7           2
 D aspartate           0.9          2           1
 E glutamate           4.6         10           2
 F phenylalanine       0.5          1           1
 G glycine            14.7         32           2
 H histidine           1.8          4           2
 I isoleucine          1.8          4           1
 K lysine              2.3          5           1
 L leucine             7.8         17           1
 M methionine          2.3          5           1
 N asparagine          1.4          3           1
 P proline             9.2         20           2
 Q glutamine           8.3         18           3
 R arginine            8.3         18           3
 S serine              8.3         18           2
 T threonine           3.2          7           1
 V valine              7.4         16           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288990          0.995   PREDICTED: hypothetical protein 
LOC100288990          0.995   PREDICTED: hypothetical protein XP_002343714 
HNRNPM                0.033   heterogeneous nuclear ribonucleoprotein M isoform a ...
HNRNPM                0.033   heterogeneous nuclear ribonucleoprotein M isoform b...
TXLNB                 0.028   taxilin beta 
COL2A1                0.026   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.026   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A2                0.023   alpha 2 type I collagen 
COL9A3                0.023   alpha 3 type IX collagen 
PRR12                 0.023   proline rich 12 
COL27A1               0.021   collagen, type XXVII, alpha 1 
COL13A1               0.021   alpha 1 type XIII collagen isoform 20 
COL13A1               0.021   alpha 1 type XIII collagen isoform 19 
COL13A1               0.021   alpha 1 type XIII collagen isoform 18 
COL13A1               0.021   alpha 1 type XIII collagen isoform 17 
COL13A1               0.021   alpha 1 type XIII collagen isoform 16 
COL13A1               0.021   alpha 1 type XIII collagen isoform 15 
COL13A1               0.021   alpha 1 type XIII collagen isoform 14 
COL13A1               0.021   alpha 1 type XIII collagen isoform 13 
COL13A1               0.021   alpha 1 type XIII collagen isoform 12 
COL13A1               0.021   alpha 1 type XIII collagen isoform 11 
COL13A1               0.021   alpha 1 type XIII collagen isoform 10 
COL13A1               0.021   alpha 1 type XIII collagen isoform 9 
COL13A1               0.021   alpha 1 type XIII collagen isoform 7 
COL13A1               0.021   alpha 1 type XIII collagen isoform 6 
COL13A1               0.021   alpha 1 type XIII collagen isoform 5 
COL13A1               0.021   alpha 1 type XIII collagen isoform 4 
COL13A1               0.021   alpha 1 type XIII collagen isoform 3 
COL13A1               0.021   alpha 1 type XIII collagen isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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