Guide to the Human Genome
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Name: LOC100289803 Sequence: fasta or formatted (308aa) NCBI GI: 239752103
Description:

PREDICTED: hypothetical protein XP_002348112

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         28           1
 C cysteine            5.2         16           2
 D aspartate           4.5         14           2
 E glutamate           5.5         17           2
 F phenylalanine       1.3          4           1
 G glycine             6.8         21           1
 H histidine           2.9          9           1
 I isoleucine          0.6          2           1
 K lysine              2.9          9           1
 L leucine            11.0         34           4
 M methionine          1.9          6           1
 N asparagine          0.6          2           1
 P proline             6.2         19           2
 Q glutamine           1.6          5           1
 R arginine           10.7         33           3
 S serine             10.4         32           3
 T threonine           7.1         22           2
 V valine              9.4         29           2
 W tryptophan          1.6          5           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348112 
LOC100293875          0.997   PREDICTED: hypothetical protein 
LOC100288508          0.980   PREDICTED: hypothetical protein XP_002343798 
SRRM2                 0.018   splicing coactivator subunit SRm300 
LOC100287104          0.018   PREDICTED: hypothetical protein XP_002343630 
LOC100288990          0.015   PREDICTED: hypothetical protein 
LOC100288990          0.015   PREDICTED: hypothetical protein XP_002343714 
LOC100293121          0.013   PREDICTED: hypothetical protein 
KRTAP10-1             0.013   keratin associated protein 10-1 
LOC729815             0.012   PREDICTED: hypothetical protein 
LOC729815             0.012   PREDICTED: hypothetical protein 
LOC100294128          0.012   PREDICTED: hypothetical protein 
KIAA1377              0.012   hypothetical protein LOC57562 
FLJ37078              0.010   hypothetical protein LOC222183 
LOC100287141          0.008   PREDICTED: hypothetical protein XP_002343631 
LOC146429             0.008   PREDICTED: hypothetical protein LOC146429 
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
LOC100292407          0.008   PREDICTED: hypothetical protein 
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
LOC146429             0.008   PREDICTED: hypothetical protein LOC146429 isoform 1...
C12orf64              0.008   PREDICTED: hypothetical protein LOC283310 
NDEL1                 0.008   nudE nuclear distribution gene E homolog (A. nidulan...
NDEL1                 0.008   nudE nuclear distribution gene E homolog (A. nidulan...
IGLL1                 0.008   immunoglobulin lambda-like polypeptide 1 isoform a p...
IGLL1                 0.008   immunoglobulin lambda-like polypeptide 1 isoform b p...
ARHGEF17              0.008   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
PPRC1                 0.007   peroxisome proliferator-activated receptor gamma, co...
LOC100291895          0.005   PREDICTED: hypothetical protein XP_002345896 
LOC100289906          0.005   PREDICTED: hypothetical protein XP_002346762 
LOC100288344          0.005   PREDICTED: hypothetical protein XP_002342611 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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