Guide to the Human Genome
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Name: LOC100133331 Sequence: fasta or formatted (207aa) NCBI GI: 239740990
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         19           1
 C cysteine            2.4          5           1
 D aspartate           1.9          4           1
 E glutamate           0.0          0           0
 F phenylalanine       1.9          4           1
 G glycine             4.3          9           2
 H histidine           6.3         13           1
 I isoleucine          1.4          3           1
 K lysine              1.9          4           1
 L leucine            14.5         30           2
 M methionine          1.9          4           1
 N asparagine          1.4          3           1
 P proline            14.5         30           2
 Q glutamine           8.7         18           2
 R arginine            3.4          7           1
 S serine             17.4         36           2
 T threonine           3.4          7           1
 V valine              1.9          4           1
 W tryptophan          1.0          2           1
 Y tyrosine            2.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128326          0.894   PREDICTED: hypothetical protein 
LOC100128326          0.894   PREDICTED: hypothetical protein 
LOC100128326          0.884   PREDICTED: hypothetical protein 
LOC730826             0.837   PREDICTED: hypothetical protein 
LOC100287258          0.802   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.802   PREDICTED: hypothetical protein 
LOC100288155          0.797   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.797   PREDICTED: hypothetical protein, partial 
LOC100290352          0.683   PREDICTED: hypothetical protein XP_002347695, parti...
LOC100132062          0.601   PREDICTED: hypothetical protein 
LOC100133161          0.599   PREDICTED: hypothetical protein 
LOC100132287          0.597   PREDICTED: hypothetical protein 
LOC100132062          0.589   PREDICTED: hypothetical protein 
LOC731275             0.584   PREDICTED: hypothetical protein 
LOC728417             0.381   PREDICTED: hypothetical protein 
LOC728417             0.381   PREDICTED: hypothetical protein 
LOC728417             0.381   PREDICTED: hypothetical protein isoform 1 
LOC728417             0.366   PREDICTED: hypothetical protein isoform 2 
LOC100294359          0.361   PREDICTED: hypothetical protein 
LOC100129904          0.337   PREDICTED: hypothetical protein 
LOC100129904          0.337   PREDICTED: hypothetical protein 
LOC100129904          0.337   PREDICTED: hypothetical protein 
LOC100129904          0.337   PREDICTED: hypothetical protein 
LOC100292470          0.158   PREDICTED: similar to hCG1779533 
LOC100293878          0.153   PREDICTED: similar to hCG1779533 
LOC729737             0.153   PREDICTED: hypothetical protein 
LOC100132050          0.153   PREDICTED: similar to hCG1779533 
LOC100132050          0.153   PREDICTED: similar to hCG1779533 
LOC729218             0.141   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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