Guide to the Human Genome
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Name: LOC100290895 Sequence: fasta or formatted (451aa) NCBI GI: 239752032
Description:

PREDICTED: hypothetical protein XP_002348072

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         47           3
 C cysteine            2.0          9           1
 D aspartate           4.0         18           2
 E glutamate           4.7         21           1
 F phenylalanine       1.8          8           2
 G glycine             9.5         43           2
 H histidine           3.5         16           2
 I isoleucine          3.1         14           1
 K lysine              2.2         10           1
 L leucine            13.5         61           3
 M methionine          1.8          8           2
 N asparagine          1.3          6           1
 P proline             6.2         28           3
 Q glutamine           7.3         33           2
 R arginine            6.9         31           2
 S serine              7.3         33           2
 T threonine           4.4         20           2
 V valine              7.5         34           3
 W tryptophan          1.6          7           1
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348072 
LOC100287206          1.000   PREDICTED: hypothetical protein XP_002343750 
LOC100292595          0.994   PREDICTED: hypothetical protein 
LOC100293652          0.014   PREDICTED: hypothetical protein 
LOC100291016          0.014   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.014   PREDICTED: hypothetical protein XP_002343597 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
LOC100293050          0.008   PREDICTED: hypothetical protein 
LOC100289982          0.008   PREDICTED: hypothetical protein XP_002347304 
LOC100288634          0.008   PREDICTED: hypothetical protein XP_002343172 
BZRAP1                0.008   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.008   peripheral benzodiazepine receptor-associated prote...
ZNF628                0.008   zinc finger protein 628 
TP53I13               0.007   tumor protein p53 inducible protein 13 
DNMT3A                0.007   DNA cytosine methyltransferase 3 alpha isoform c [Ho...
C10orf71              0.007   hypothetical protein LOC118461 isoform 1 
KIF19                 0.006   kinesin family member 19 
LOC100133142          0.006   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100291586          0.006   PREDICTED: hypothetical protein XP_002345859 
LOC100291394          0.006   PREDICTED: hypothetical protein XP_002346737 
LOC100133142          0.006   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100288032          0.006   PREDICTED: hypothetical protein XP_002342573 
MLL4                  0.006   myeloid/lymphoid or mixed-lineage leukemia 4 
C11orf41              0.006   hypothetical protein LOC25758 
LENG9                 0.006   leukocyte receptor cluster (LRC) member 9 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.006   PREDICTED: hypothetical protein LOC80164 
DNMT3A                0.006   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.006   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
RAPGEF1               0.005   guanine nucleotide-releasing factor 2 isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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