Guide to the Human Genome
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Name: LOC100290029 Sequence: fasta or formatted (132aa) NCBI GI: 239751067
Description:

PREDICTED: hypothetical protein XP_002347693

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         11           1
 C cysteine            2.3          3           1
 D aspartate           3.8          5           1
 E glutamate          16.7         22           7
 F phenylalanine       2.3          3           1
 G glycine             9.8         13           2
 H histidine           0.0          0           0
 I isoleucine          1.5          2           1
 K lysine              8.3         11           1
 L leucine             3.0          4           2
 M methionine          3.8          5           1
 N asparagine          1.5          2           1
 P proline            10.6         14           2
 Q glutamine           4.5          6           2
 R arginine            9.1         12           2
 S serine              3.0          4           1
 T threonine           5.3          7           1
 V valine              3.8          5           2
 W tryptophan          0.8          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347693 
ZNF771                0.287   zinc finger protein 771 
ZNF771                0.287   zinc finger protein 771 
C3orf44               0.088   hypothetical protein LOC131831 
LOC731605             0.060   PREDICTED: similar to BCL2-associated transcription...
KLHDC7B               0.060   kelch domain containing 7B 
NEFH                  0.056   neurofilament, heavy polypeptide 200kDa 
SCAF1                 0.056   SR-related CTD-associated factor 1 
PRB3                  0.056   proline-rich protein BstNI subfamily 3 precursor [H...
PPARGC1B              0.052   peroxisome proliferator-activated receptor gamma, co...
TULP1                 0.052   tubby like protein 1 
ATN1                  0.048   atrophin-1 
ATN1                  0.048   atrophin-1 
ZFHX3                 0.048   AT-binding transcription factor 1 
STK11IP               0.048   LKB1 interacting protein 
LOC731605             0.044   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.044   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.044   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.044   BCL2-associated transcription factor 1 isoform 1 [Hom...
KIAA1429              0.044   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.044   hypothetical protein LOC25962 isoform 2 
PHF23                 0.040   PHD finger protein 23 
TTBK1                 0.040   tau tubulin kinase 1 
SYN2                  0.040   synapsin II isoform IIa 
SRRM2                 0.040   splicing coactivator subunit SRm300 
BAZ1B                 0.040   bromodomain adjacent to zinc finger domain, 1B [Homo...
LOC100289089          0.040   PREDICTED: hypothetical protein XP_002343359 
MLL4                  0.040   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100133758          0.036   PREDICTED: hypothetical protein, partial 
BSN                   0.036   bassoon protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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