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Search of human proteins with 239750595
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750595 PREDICTED: similar to hCG2012058 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750595 PREDICTED: similar to hCG2012058 [Homo sapiens] 373 e-104
gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens] 40 8e-04
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 35 0.032
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 35 0.042
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 34 0.055
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 34 0.072
gi|28269693 xylosyltransferase I [Homo sapiens] 33 0.094
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 33 0.094
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 33 0.094
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 33 0.12
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 33 0.12
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 33 0.12
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 33 0.12
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 33 0.12
gi|76781485 vascular endothelial growth factor A isoform f precu... 32 0.21
gi|76781484 vascular endothelial growth factor A isoform e precu... 32 0.21
gi|76781483 vascular endothelial growth factor A isoform d precu... 32 0.21
gi|76781482 vascular endothelial growth factor A isoform c precu... 32 0.21
gi|76781481 vascular endothelial growth factor A isoform b precu... 32 0.21
gi|76781480 vascular endothelial growth factor A isoform a precu... 32 0.21
gi|76781487 vascular endothelial growth factor A isoform g precu... 32 0.21
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.36
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.36
gi|239754436 PREDICTED: similar to hCG2038817 [Homo sapiens] 32 0.36
gi|239748930 PREDICTED: hypothetical protein XP_002346860 [Homo ... 32 0.36
gi|239742952 PREDICTED: hypothetical protein XP_002342703 [Homo ... 32 0.36
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.36
gi|133922582 zinc finger protein 358 [Homo sapiens] 32 0.36
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 31 0.47
gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] 31 0.61
>gi|239750595 PREDICTED: similar to hCG2012058 [Homo sapiens]
Length = 173
Score = 373 bits (958), Expect = e-104
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MTALKDRRERLWLWLESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSRGS 60
MTALKDRRERLWLWLESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSRGS
Sbjct: 1 MTALKDRRERLWLWLESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSRGS 60
Query: 61 VTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSG 120
VTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSG
Sbjct: 61 VTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSG 120
Query: 121 APGNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCKARWGPACLGLNLDFMGLWL 173
APGNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCKARWGPACLGLNLDFMGLWL
Sbjct: 121 APGNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCKARWGPACLGLNLDFMGLWL 173
>gi|157426856 armadillo repeat containing 5 isoform a [Homo sapiens]
Length = 935
Score = 40.4 bits (93), Expect = 8e-04
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 49 PWRGWDPGSRGSVT------AAWATACGDLTFLGKPM-GQRSREIQAPSGRYGRTGAFAV 101
P RG PG+ V A G + G+P+ G + E +GR+ G
Sbjct: 791 PLRGLSPGAAWPVLHHLHGCRGCGAALGPVPPPGQPLLGSEAEEALEAAGRFLLPGL--E 848
Query: 102 EKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCKARWGPAC 161
E+L +VG+ G +G + G + L RP + HCA W LG + C + G A
Sbjct: 849 EELEEAVGRIHLGPQGGPESVGEV-FRLGRPRLAAHCARWTLGSEQ-----CPRKRGLAL 902
Query: 162 LGL 164
+GL
Sbjct: 903 VGL 905
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 35.0 bits (79), Expect = 0.032
Identities = 33/115 (28%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 18 EAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGK 77
E G G G S +GP G G +P P +G + AW G+
Sbjct: 675 EPGPGSTGSSESPGSQGP------GSPEGSAPLE--PPSQQGCRSLAW----------GE 716
Query: 78 PMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRP 132
P G RS + AP+ + GA + E LG + R S PG A RP
Sbjct: 717 PAGSRSCPLPAPTPAPFKVGALSTEVLG-RQHRAALAGRSLSSPPGRANQVPGRP 770
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 34.7 bits (78), Expect = 0.042
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 2 TALKDRRERLWLWLESEAGAGGQ----GLSLGGDERGPEPCLPEGRARGHSPWRGWDPGS 57
+ L D++ R W + G GQ G + GG + P+ G P R W +
Sbjct: 210 SGLGDKKSRRWG--RKKPGRWGQEAVAGETCGGGGKKPQKAAAPGAKSHKKPRRQWQKAA 267
Query: 58 RGSVTAAWATACGDLTFLGKPMGQRSREIQAPSGRYG 94
V A A +CG GQ++ +A SG +G
Sbjct: 268 AEKVAVAGAESCGG-------RGQKAAAARAKSGGFG 297
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.3 bits (77), Expect = 0.055
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 21 AGGQGLSLGGDERGPEPCLPEGRARGHSPWRGW--DPGSRGSVTAAWATACGDLTFLGKP 78
AG +G RG + E A G RG+ +PG+ GS A G +G P
Sbjct: 1079 AGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPA-----GQQGAIGSP 1133
Query: 79 MGQRSREIQAPSGRYGRTGAFAVE-KLGVSVGKERNGSRGSSGAPGNAAYTLPRPPP 134
R PSG G+ G +G + G RGS G+PG+ P PP
Sbjct: 1134 GPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP 1190
Score = 29.3 bits (64), Expect = 1.8
Identities = 38/143 (26%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 21 AGGQGLSLGGDERGPE-------PCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLT 73
AG GL G GPE P P G A +P PG RG + + G
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAG--TPGLQGMPGERGGLGSP-----GPKG 741
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSR-------GSSGAPGNAA 126
G+P G + + G G TG G + G G G+PG
Sbjct: 742 DKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERG 801
Query: 127 YTLPRPPPSVHCAAWVLGQPEGR 149
T P P A G+P G+
Sbjct: 802 ETGPPGPAGFPGAPGQNGEPGGK 824
Score = 28.1 bits (61), Expect = 4.0
Identities = 42/149 (28%), Positives = 49/149 (32%), Gaps = 39/149 (26%)
Query: 15 LESEAGAGGQGLSLGGDERGPEPCLPEGR-ARGHSPWRGWD--PGSRGSVTAAWATACGD 71
L E GA G G P LP ARG+ RG D PG G A
Sbjct: 289 LPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTA------- 341
Query: 72 LTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPR 131
G P ++ P+G G GA G RG G G+A P
Sbjct: 342 ----GFPGSPGAKGEVGPAGSPGSNGA--------------PGQRGEPGPQGHAGAQGPP 383
Query: 132 PPPSVHCAAWVLGQPEGRRLPCKARWGPA 160
PP ++ G P G K GPA
Sbjct: 384 GPPGIN------GSPGG-----KGEMGPA 401
Score = 26.9 bits (58), Expect = 8.8
Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 30 GDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKP-----MGQRSR 84
G+ P P P G A P R PG G + G GKP G+ R
Sbjct: 507 GERGAPGPAGPRGAAG--EPGRDGVPGGPGM--RGMPGSPGGPGSDGKPGPPGSQGESGR 562
Query: 85 E-IQAPSGRYGRTGAFAVE-KLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWV 142
PSG G+ G G +NG RG G PG P+ PP +
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG------PQGPPGKNGETGP 616
Query: 143 LGQP 146
G P
Sbjct: 617 QGPP 620
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 33.9 bits (76), Expect = 0.072
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 24/108 (22%)
Query: 17 SEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLG 76
+ G G GL GG GP P P G G P+ +PG S T G
Sbjct: 31 NSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTP------------G 78
Query: 77 KPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGN 124
P G AP G YG+ S G ++ G G GAP N
Sbjct: 79 GPYGG-----AAPGGPYGQPPP-------SSYGAQQPGLYGQGGAPPN 114
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 33.5 bits (75), Expect = 0.094
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 7 RRERLWLWLESEAG-AGGQGLSLGGDERGPEPCLPEGRARGHSPW--RGWDPGSRGSVTA 63
RRER L E A GG G GG RGP+ RARG P RG P SRG++ A
Sbjct: 64 RRERRDLPAEPAAARGGGGGGGGGGGGRGPQ-----ARARGGGPGEPRGQQPASRGALPA 118
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 33.5 bits (75), Expect = 0.094
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 21 AGGQGLSLGGDERGPEPCLPEGRA----RGHSPWRGWDPGSRGSVTAAWATACGDLTFLG 76
AG GL G P P P+G +G +G D G G +T G+L F+G
Sbjct: 198 AGPPGLQ--GPPGPPGPLGPDGNMGLGFQGEKGVKG-DVGLPGPAGPPPST--GELEFMG 252
Query: 77 KPMGQR-SREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPG 123
P G++ S+ P G G +G LG + K G +G G PG
Sbjct: 253 FPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGIPGLPG 300
Score = 27.3 bits (59), Expect = 6.7
Identities = 37/137 (27%), Positives = 45/137 (32%), Gaps = 28/137 (20%)
Query: 10 RLWLWLES--------EAGAGGQGLSLGGDE-RGPEPCLPEGRARGHSPWRGWDPGSRGS 60
+LWL L + AG G GG + G C PE ARG PG G
Sbjct: 5 KLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPEKGARGR-------PGPIGI 57
Query: 61 VTAAWATACGDLTFLGKPMGQRSRE-IQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSS 119
T L G+R + P G G G V G G +
Sbjct: 58 QGPTGPQGFTGSTGLSGLKGERGFPGLLGPYGPKGDKGPMGVP-----------GFLGIN 106
Query: 120 GAPGNAAYTLPRPPPSV 136
G PG+ PR PP +
Sbjct: 107 GIPGHPGQPGPRGPPGL 123
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 33.5 bits (75), Expect = 0.094
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 21 AGGQGLSLGGDERGPEPCLPEGRA----RGHSPWRGWDPGSRGSVTAAWATACGDLTFLG 76
AG GL G P P P+G +G +G D G G +T G+L F+G
Sbjct: 197 AGPPGLQ--GPPGPPGPLGPDGNMGLGFQGEKGVKG-DVGLPGPAGPPPST--GELEFMG 251
Query: 77 KPMGQR-SREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPG 123
P G++ S+ P G G +G LG + K G +G G PG
Sbjct: 252 FPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGEKGIPGLPG 299
Score = 26.9 bits (58), Expect = 8.8
Identities = 36/129 (27%), Positives = 43/129 (33%), Gaps = 23/129 (17%)
Query: 13 LWLESEAGAGGQ---GLSLGGDE-RGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATA 68
L L E A G+ G GG + G C PE ARG PG G
Sbjct: 12 LCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPEKGARGR-------PGPIGIQGPTGPQG 64
Query: 69 CGDLTFLGKPMGQRSRE-IQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAY 127
T L G+R + P G G G V G G +G PG+
Sbjct: 65 FTGSTGLSGLKGERGFPGLLGPYGPKGDKGPMGVP-----------GFLGINGIPGHPGQ 113
Query: 128 TLPRPPPSV 136
PR PP +
Sbjct: 114 PGPRGPPGL 122
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 33.1 bits (74), Expect = 0.12
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 54 DPGSRGSVTAAWATA-CGDLTFLGKP---------MGQR-SREIQAPSGRYGRTGAFAVE 102
DPGS+GS + A G+ F G P GQ+ S+ Q GR G+ G
Sbjct: 1489 DPGSQGSPGSRGAPGQYGEKGFPGDPGNPGQNNNIKGQKGSKGEQGRQGRSGQKGVQGSP 1548
Query: 103 KLGVSVGKE-RNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEG 148
S G+E + G RG SG PGN P P+ A L P+G
Sbjct: 1549 SSRGSRGREGQRGLRGVSGEPGN-------PGPTGTLGAEGLQGPQG 1588
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 33.1 bits (74), Expect = 0.12
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLP--EGRARGHSPWRGWD-----PGSRGSVTAAWATA 68
E + G G+ G + EP LP EG ARG ++G PG RG A
Sbjct: 689 EGKEGRDGKPGPPGEPGKAGEPGLPGPEG-ARGPPGFKGHTGDSGAPGPRGESGAMGLP- 746
Query: 69 CGDLTFLGK-----PMGQRSREIQAPSGRYGRTGA-FAVEKLGVSVGKERNGSRGSSGAP 122
G GK P G + Q P G G+ G+ + + G S + GS+G +G+P
Sbjct: 747 -GQEGLPGKDGDTGPTGPQGP--QGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSP 803
Query: 123 GNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCK 154
G + PR PP G+P + +P K
Sbjct: 804 GLPGFLGPRGPP---------GEPGEKGVPGK 826
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 33.1 bits (74), Expect = 0.12
Identities = 44/145 (30%), Positives = 52/145 (35%), Gaps = 41/145 (28%)
Query: 6 DRRERLWLW------LESEAGAGGQGLSLGGDERGPEPCLPEG--------RARGHSPWR 51
D +E LW++ +E E G GD P P G GH +
Sbjct: 543 DSQEELWMFVRKKLMMEQENGNLRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQ 602
Query: 52 GWDPGSRGSVTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKE 111
G G +GSV GD G PMGQR RE P G G G G
Sbjct: 603 G-PKGQKGSV--------GDPGMEG-PMGQRGRE--GPMGPRGEAGP---------PGSG 641
Query: 112 RNGSRGSSGAPGNAAYTLPRPPPSV 136
G RG++G PG P PP V
Sbjct: 642 EKGERGAAGEPG------PHGPPGV 660
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 33.1 bits (74), Expect = 0.12
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 36 EPCLPEGRA--RGHSPWRGWDPGSRGSVTAA-WATAC--GDLTFLGKPMGQRS----REI 86
E P GR R ++PW+ P S S+ A+ WAT G L +P+ Q RE
Sbjct: 1066 ESITPGGRPPYRSNAPWQWSGPASHNSLPASKWATPTTPGHAQSLSRPLKQTPIVPFRES 1125
Query: 87 QAPSGRYGRTGAFAVEKLGVS-VGKER----NGSRGSSGAPGNAAYTLPRPPPSVHCAA 140
Q + R +F VS G +R GS PG+A Y +P P + AA
Sbjct: 1126 QPLHSK--RPVSFPETPYTVSPAGADRVPPYRQPSGSFSTPGSATYVRYKPSPERYTAA 1182
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 33.1 bits (74), Expect = 0.12
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLP--EGRARGHSPWRGWD-----PGSRGSVTAAWATA 68
E + G G+ G + EP LP EG ARG ++G PG RG A
Sbjct: 1242 EGKEGRDGKPGPPGEPGKAGEPGLPGPEG-ARGPPGFKGHTGDSGAPGPRGESGAMGLP- 1299
Query: 69 CGDLTFLGK-----PMGQRSREIQAPSGRYGRTGA-FAVEKLGVSVGKERNGSRGSSGAP 122
G GK P G + Q P G G+ G+ + + G S + GS+G +G+P
Sbjct: 1300 -GQEGLPGKDGDTGPTGPQGP--QGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSP 1356
Query: 123 GNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCK 154
G + PR PP G+P + +P K
Sbjct: 1357 GLPGFLGPRGPP---------GEPGEKGVPGK 1379
Score = 30.0 bits (66), Expect = 1.0
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 33 RGPE--PCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKP--MGQRSRE--- 85
RGP+ P LP R +P + G +G T G F GKP GQ+ R
Sbjct: 568 RGPQGPPGLPGPPGRVGAPGLQGERGEKG--TRGEKGERGLDGFPGKPGDTGQQGRPGPS 625
Query: 86 -IQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLG 144
+ P G G G + SV ++ G +G GAPG + PP A +G
Sbjct: 626 GVAGPQGEKGDVGPAGPPGVPGSV-VQQEGLKGEQGAPGPRGHQGAPGPPG---ARGPIG 681
Query: 145 QPEGRRLP 152
PEGR P
Sbjct: 682 -PEGRDGP 688
>gi|76781485 vascular endothelial growth factor A isoform f
precursor [Homo sapiens]
Length = 327
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781484 vascular endothelial growth factor A isoform e
precursor [Homo sapiens]
Length = 354
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781483 vascular endothelial growth factor A isoform d
precursor [Homo sapiens]
Length = 371
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781482 vascular endothelial growth factor A isoform c
precursor [Homo sapiens]
Length = 389
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781481 vascular endothelial growth factor A isoform b
precursor [Homo sapiens]
Length = 395
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781480 vascular endothelial growth factor A isoform a
precursor [Homo sapiens]
Length = 412
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|76781487 vascular endothelial growth factor A isoform g
precursor [Homo sapiens]
Length = 371
Score = 32.3 bits (72), Expect = 0.21
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 16 ESEAGAGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWDPGSR--GSVTAAWATACGDLT 73
E+E + S G +E PE E + W G+R GS T A C D
Sbjct: 73 EAEPSGAARSASSGREEPQPEEG-EEEEEKEEERGPQWRLGARKPGSWTGE-AAVCAD-- 128
Query: 74 FLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTL 129
P + + + SGR GR E+ G R GS +G PG A+ T+
Sbjct: 129 --SAPAARAPQALARASGRGGRVARRGAEESGPPHSPSRRGSASRAG-PGRASETM 181
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.6 bits (70), Expect = 0.36
Identities = 45/157 (28%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 16 ESEAGAGGQGLSLG--GDERGPEPCLPEGR--------------ARGHS--PWRGWDPGS 57
+ EAGA G G G+ P P P G ARG+ P PG
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP 358
Query: 58 RGSVTAAWATACGDLTFLGKPMGQRSRE-IQAPSGRYGRTGAFAVEKLGVSVGKER-NGS 115
G P G R E Q P G G G+ + G + G+
Sbjct: 359 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 418
Query: 116 RGSSGAPGNA---AYTLPRPPPSVHCAAWVLGQPEGR 149
+GS+GAPG A + PR PP A LG P+G+
Sbjct: 419 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG-PKGQ 454
Score = 28.9 bits (63), Expect = 2.3
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 21 AGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWD-----PGSRGSVTAAWATACGDLTFL 75
AG +G+ RG + E RG RG+ PG G GD
Sbjct: 1103 AGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP--------SGDQGAS 1154
Query: 76 GKPMGQRSREIQAPSGRYGRTGAFAVE-KLGVSVGKERNGSRGSSGAPGNAAYTLPRPPP 134
G R P G G+ GA + +G + R+G G +G PGN P PP
Sbjct: 1155 GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1214
Score = 28.5 bits (62), Expect = 3.0
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 30 GDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQRSREIQAP 89
G++ P P P+G ARG G+ PG +G A G+ G+ + ++
Sbjct: 582 GEDGRPGPPGPQG-ARGQPGVMGF-PGPKG--------ANGEPGKAGEKGLPGAPGLRGL 631
Query: 90 SGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYT-LPRPP 133
G+ G TGA G G RG GAPG + + LP PP
Sbjct: 632 PGKDGETGA-----AGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 671
Score = 28.5 bits (62), Expect = 3.0
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 16 ESEAGAGGQGLSLG--GDERGPEPCLPEGRARGHSPWRGWDP-GSRGSVTAAWATAC-GD 71
+ + GA G+ G GD P P P G P P G+RG+ AT G
Sbjct: 842 DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA 901
Query: 72 LTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNA 125
+G P + P G G+ G G+RG SG PG A
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGP--------------KGARGDSGPPGRA 941
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.6 bits (70), Expect = 0.36
Identities = 45/157 (28%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 16 ESEAGAGGQGLSLG--GDERGPEPCLPEGR--------------ARGHS--PWRGWDPGS 57
+ EAGA G G G+ P P P G ARG+ P PG
Sbjct: 230 KGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP 289
Query: 58 RGSVTAAWATACGDLTFLGKPMGQRSRE-IQAPSGRYGRTGAFAVEKLGVSVGKER-NGS 115
G P G R E Q P G G G+ + G + G+
Sbjct: 290 VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGA 349
Query: 116 RGSSGAPGNA---AYTLPRPPPSVHCAAWVLGQPEGR 149
+GS+GAPG A + PR PP A LG P+G+
Sbjct: 350 KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLG-PKGQ 385
Score = 28.9 bits (63), Expect = 2.3
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 14/120 (11%)
Query: 21 AGGQGLSLGGDERGPEPCLPEGRARGHSPWRGWD-----PGSRGSVTAAWATACGDLTFL 75
AG +G+ RG + E RG RG+ PG G GD
Sbjct: 1034 AGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP--------SGDQGAS 1085
Query: 76 GKPMGQRSREIQAPSGRYGRTGAFAVE-KLGVSVGKERNGSRGSSGAPGNAAYTLPRPPP 134
G R P G G+ GA + +G + R+G G +G PGN P PP
Sbjct: 1086 GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1145
Score = 28.5 bits (62), Expect = 3.0
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 30 GDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQRSREIQAP 89
G++ P P P+G ARG G+ PG +G A G+ G+ + ++
Sbjct: 513 GEDGRPGPPGPQG-ARGQPGVMGF-PGPKG--------ANGEPGKAGEKGLPGAPGLRGL 562
Query: 90 SGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYT-LPRPP 133
G+ G TGA G G RG GAPG + + LP PP
Sbjct: 563 PGKDGETGA-----AGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 602
Score = 28.5 bits (62), Expect = 3.0
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 16 ESEAGAGGQGLSLG--GDERGPEPCLPEGRARGHSPWRGWDP-GSRGSVTAAWATAC-GD 71
+ + GA G+ G GD P P P G P P G+RG+ AT G
Sbjct: 773 DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA 832
Query: 72 LTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNA 125
+G P + P G G+ G G+RG SG PG A
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGP--------------KGARGDSGPPGRA 872
>gi|239754436 PREDICTED: similar to hCG2038817 [Homo sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.36
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 34 GPEPCLPEGRARG--HSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQ---RSREIQA 88
G +P LP G A+ H+ RG G R + A L+ LG P G + E
Sbjct: 59 GSQP-LPVGAAQRVRHASERGSGGGDRDA-----AATPASLSPLGHPRGPFCLQFLEPPK 112
Query: 89 PSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEG 148
P R R EK G + RG SGA N + P PP V A QP
Sbjct: 113 PPMRQERVAGTICEKWGSGPSQWGAPRRGLSGASANRSAAAPINPPFVRPARPPPPQPHQ 172
Query: 149 R 149
R
Sbjct: 173 R 173
>gi|239748930 PREDICTED: hypothetical protein XP_002346860 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.36
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 34 GPEPCLPEGRARG--HSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQ---RSREIQA 88
G +P LP G A+ H+ RG G R + A L+ LG P G + E
Sbjct: 59 GSQP-LPVGAAQRVRHASERGSGGGDRDA-----AATPASLSPLGHPRGPFCLQFLEPPK 112
Query: 89 PSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEG 148
P R R EK G + RG SGA N + P PP V A QP
Sbjct: 113 PPMRQERVAGTICEKWGSGPSQWGAPRRGLSGASANRSAAAPINPPFVRPARPPPPQPHQ 172
Query: 149 R 149
R
Sbjct: 173 R 173
>gi|239742952 PREDICTED: hypothetical protein XP_002342703 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.36
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 34 GPEPCLPEGRARG--HSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQ---RSREIQA 88
G +P LP G A+ H+ RG G R + A L+ LG P G + E
Sbjct: 59 GSQP-LPVGAAQRVRHASERGSGGGDRDA-----AATPASLSPLGHPRGPFCLQFLEPPK 112
Query: 89 PSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEG 148
P R R EK G + RG SGA N + P PP V A QP
Sbjct: 113 PPMRQERVAGTICEKWGSGPSQWGAPRRGLSGASANRSAAAPINPPFVRPARPPPPQPHQ 172
Query: 149 R 149
R
Sbjct: 173 R 173
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 31.6 bits (70), Expect = 0.36
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 40 PEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAF 99
PEG R P + PG +G G G+P G R +Q P G G G
Sbjct: 752 PEGVGRPGKPGQPGLPGVQGPP--------GLKGVQGEP-GPPGRGVQGPQGEPGAPGLP 802
Query: 100 AVEKLGVSVGKER-NGSRGSSGAPGNAAYTLPRPPP 134
++ L G G +G+ G+PG T P PP
Sbjct: 803 GIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP 838
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 89 PSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPP 133
P G G+ G + +G+ + G RG +G PG P PP
Sbjct: 1295 PPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQ-----PGPP 1334
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 31.6 bits (70), Expect = 0.36
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 56 GSRGSVTAAWATACGDLTFLGKPMGQRSREIQAPSGRYGRTGAFAVEKLGVSVGKERNGS 115
G+ + AA A A LG G + P G+ G AV LG +G S
Sbjct: 399 GAAAAAAAAAAAAAAAAAGLGLGPGLSPASMMRP-GQVSLLGPDAVSVLGSGLGLSPGTS 457
Query: 116 RGSSGAPGNAAYTLPRP 132
G + PG+ TLP P
Sbjct: 458 SGRNPDPGSGPGTLPDP 474
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 31.2 bits (69), Expect = 0.47
Identities = 47/167 (28%), Positives = 62/167 (37%), Gaps = 22/167 (13%)
Query: 17 SEAGAGGQGL-SLGGDERGPEPCLPEGRARGHSPWRGW--DPGSRGSVTAAWATA-CGDL 72
+E AG G L G P P P G +G RG PGSRG+ + G +
Sbjct: 787 AEGTAGNDGARGLPGPLGPPGPAGPTGE-KGEPGPRGLVGPPGSRGNPGSRGENGPTGAV 845
Query: 73 TFLGK--PMGQRSREIQ-------------APSGRYGRTGAFAVEKL-GVSVGKERNGSR 116
F G P GQ + + P G G G + G+ G+ G
Sbjct: 846 GFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPP 905
Query: 117 GSSGAPGNAAYTLPRPPPSVHCAAWVLGQPEGRRLPCKARWGPACLG 163
G++G PG+A P P A LG+P G+ P R P G
Sbjct: 906 GATGFPGSAGRVGPPGPAGAPGPAGPLGEP-GKEGPPGLRGDPGSHG 951
Score = 30.8 bits (68), Expect = 0.61
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 28 LGGDERGPEPCLPEGRARGHSPWRGWDPGSRGSVTAAWATACGDLTFLGKPMGQRSRE-I 86
L G + P P G A G + RG DPGSRG + L P G +
Sbjct: 1078 LPGSQGAPGTPGPVG-APGDAGQRG-DPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGD 1135
Query: 87 QAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPP 134
+ G+ G G ++ L G NG +GS+G PG PR PP
Sbjct: 1136 RGDRGQKGHRGFTGLQGLPGPPGP--NGEQGSAGIPGPFG---PRGPP 1178
Score = 28.9 bits (63), Expect = 2.3
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 78 PMGQRSRE-IQAPSGRYGRTGAFAVEKLGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSV 136
P GQR P G G GA + G K GS G+SG PG+A P
Sbjct: 400 PQGQRGETGPPGPVGSPGLPGAIGTD--GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGS 457
Query: 137 HCAAWVLGQPEGRRLP-CKARWGP 159
+ GQP +P K GP
Sbjct: 458 TGPQGIRGQPGDPGVPGFKGEAGP 481
>gi|169168341 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 30.8 bits (68), Expect = 0.61
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 82 RSREIQAPSGRYGRTGAFAVEK---LGVSVGKERNGSRGSSGAPGNAAYTLPRPPPSVHC 138
R+ +AP+ G G A + + +G+ R+ + SG PG + + P P SV
Sbjct: 7 RAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEP 66
Query: 139 AAWV 142
AWV
Sbjct: 67 QAWV 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,203,405
Number of Sequences: 37866
Number of extensions: 537967
Number of successful extensions: 2643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 2321
Number of HSP's gapped (non-prelim): 545
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.