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Search of human proteins with 239750425
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo
sapiens]
(341 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo ... 721 0.0
gi|239755911 PREDICTED: hypothetical protein [Homo sapiens] 393 e-109
gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo ... 393 e-109
gi|39995080 hypothetical protein LOC79567 [Homo sapiens] 37 0.019
gi|50345997 E1A binding protein p300 [Homo sapiens] 37 0.033
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 34 0.22
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 34 0.22
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.37
gi|156105697 ring finger and CCCH-type zinc finger domains 2 iso... 32 0.63
gi|156105699 ring finger and CCCH-type zinc finger domains 2 iso... 32 0.63
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 32 0.82
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 1.1
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 31 1.4
gi|223633957 proline-rich acidic protein 1 isoform 2 [Homo sapiens] 30 2.4
gi|46852164 mannosidase, alpha, class 2C, member 1 [Homo sapiens] 30 2.4
gi|229577273 BUD13 homolog isoform 2 [Homo sapiens] 30 3.1
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens] 30 3.1
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens] 30 3.1
gi|58743365 ring finger protein 157 [Homo sapiens] 30 3.1
gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo s... 30 3.1
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 30 3.1
gi|223633959 proline-rich acidic protein 1 isoform 1 [Homo sapiens] 30 4.1
gi|70906435 fibrinogen, beta chain preproprotein [Homo sapiens] 30 4.1
gi|148613882 homeobox A4 [Homo sapiens] 30 4.1
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|169173078 PREDICTED: hypothetical protein [Homo sapiens] 30 4.1
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 30 4.1
gi|153792074 proline rich 12 [Homo sapiens] 30 4.1
gi|237820622 pleckstrin homology domain containing, family N mem... 29 5.3
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 29 5.3
>gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo
sapiens]
Length = 341
Score = 721 bits (1862), Expect = 0.0
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW
Sbjct: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
Query: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA
Sbjct: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
Query: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS
Sbjct: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
Query: 181 PVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDTSREHFFLVC 240
PVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDTSREHFFLVC
Sbjct: 181 PVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDTSREHFFLVC 240
Query: 241 TPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDSSEECRRRIN 300
TPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDSSEECRRRIN
Sbjct: 241 TPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDSSEECRRRIN 300
Query: 301 PQPTVGVLPPFRQCLVIPVSTEKPLASGTLALLLSCNGCPE 341
PQPTVGVLPPFRQCLVIPVSTEKPLASGTLALLLSCNGCPE
Sbjct: 301 PQPTVGVLPPFRQCLVIPVSTEKPLASGTLALLLSCNGCPE 341
>gi|239755911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 667
Score = 393 bits (1010), Expect = e-109
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW
Sbjct: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
Query: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA
Sbjct: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
Query: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS
Sbjct: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
Query: 181 PVMV 184
PVMV
Sbjct: 181 PVMV 184
>gi|239744727 PREDICTED: hypothetical protein XP_002343254 [Homo
sapiens]
Length = 567
Score = 393 bits (1010), Expect = e-109
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW
Sbjct: 1 MGYGGTWAVSGPPSLQGQVNGMRSWLQANLMNLHSSSWVNISRAPQKNSMCWSVSISPTW 60
Query: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA
Sbjct: 61 YMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQPQA 120
Query: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS
Sbjct: 121 PDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSS 180
Query: 181 PVMV 184
PVMV
Sbjct: 181 PVMV 184
>gi|39995080 hypothetical protein LOC79567 [Homo sapiens]
Length = 1219
Score = 37.4 bits (85), Expect = 0.019
Identities = 44/168 (26%), Positives = 59/168 (35%), Gaps = 17/168 (10%)
Query: 164 THATRMCRPRLHSSTSSPVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPL 223
TH T M P S T S + + +T S T T P SL +L
Sbjct: 630 THKTSMSPPTTTSPTPSGMGLVQTATSPTHPTTSPTHPTTSPILINVSPSTSLELATLSS 689
Query: 224 HRRHSTDTSREHFFLVCTPQHHVVLHPIP-SGALAIPVARSLSWPVYRDPASHPLLPQPV 282
+HS T L C+P P+ S A P+A P + PL
Sbjct: 690 PSKHSDPTLPGTDSLPCSP-------PVSNSYTQADPMAPRTPHPSPAHSSRKPL----- 737
Query: 283 LHPEPQEDSSEECRRRINPQPTVGVLPPFRQ--CLVIPVSTEKPLASG 328
P D SE + ++P P+ P CL + V T P A+G
Sbjct: 738 --TSPAPDPSESTVQSLSPTPSPPTPAPQHSDLCLAMAVQTPVPTAAG 783
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 36.6 bits (83), Expect = 0.033
Identities = 47/199 (23%), Positives = 70/199 (35%), Gaps = 32/199 (16%)
Query: 115 LPQPQAPD-GCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQP--LTRAHTHATRMCR 171
LPQ Q P G V + L P+ ++ + A + SP P +H H ++ +
Sbjct: 765 LPQTQFPSQGMNVTNIPLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQ 824
Query: 172 PRLHSSTSSPVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDT 231
P LH ++ SPV R T P T S+G +P + + +P
Sbjct: 825 PALHQNSPSPVPSRTPT---PHHTPPSIG--------AQQPPATTIPAPVPTPPAMPPGP 873
Query: 232 SREHFFLVCTPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDS 291
+ LHP P P L V + P QP P Q+ +
Sbjct: 874 QSQ------------ALHP-PPRQTPTPPTTQLPQQVQPSLPAAPSADQPQQQPRSQQST 920
Query: 292 SEECRRRINPQPTVGVLPP 310
+ P PT +LPP
Sbjct: 921 AASV-----PTPTAPLLPP 934
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 248 LHPIPSGALAIPVARSLSWPV----YRDPASHPLLPQPVLHPEPQED 290
+HP+ G P A WP+ +P+SHP P P + P+PQ D
Sbjct: 761 VHPMELG----PTATGQPWPLDPENSHEPSSHPEKPLPAVSPDPQAD 803
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 248 LHPIPSGALAIPVARSLSWPV----YRDPASHPLLPQPVLHPEPQED 290
+HP+ G P A WP+ +P+SHP P P + P+PQ D
Sbjct: 735 VHPMELG----PTATGQPWPLDPENSHEPSSHPEKPLPAVSPDPQAD 777
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 33.1 bits (74), Expect = 0.37
Identities = 44/175 (25%), Positives = 59/175 (33%), Gaps = 26/175 (14%)
Query: 118 PQAPDGCRVDVLVLPP-ARVRSTGTDAAVIPWL----AGRASPCQPLTRAHTHATRMCRP 172
PQA G LPP A +RST T V A ASP T T T M P
Sbjct: 1280 PQATSG-------LPPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLP 1332
Query: 173 RLHSSTSSPVMVRETTGSDPKETDCSLGTVTGGWTFGSKP------GVSLVATSLPLHRR 226
+S +SP + PK T+ L T T G +P G + P
Sbjct: 1333 TPATSGTSPTL--------PKSTNQELPGTTATQTTGPRPTPASTTGPTTPQPGQPTRPT 1384
Query: 227 HSTDTSREHFFLVCTPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQP 281
+ T TPQ H P+ +P ++ + ++P P
Sbjct: 1385 ATETTQTRTTTEYTTPQTPHTTHSPPTAGSPVPSTGPVTATSFHATTTYPTPSHP 1439
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 132 PPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSSPVMVRETTGS- 190
PP +++TG+ + Q L+ +T T LHS TSS T+ S
Sbjct: 1655 PPTTLKATGSTHTAPTMTLTTSGTSQALSSLNTAKTSTS---LHSHTSSTHHAEATSTST 1711
Query: 191 -----DPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHST 229
+P T TVT T S+ S TS LH S+
Sbjct: 1712 TNITPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLHSHTSS 1755
>gi|156105697 ring finger and CCCH-type zinc finger domains 2
isoform 1 [Homo sapiens]
Length = 1191
Score = 32.3 bits (72), Expect = 0.63
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 212 PGVSLVATSLPLHRRHSTDTSREHF----FLVCTPQHHVVLHPIPSGALAIPVARSLSW- 266
P SL S+P +ST + R+ + PQ + + P+PSG A W
Sbjct: 643 PESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWR 702
Query: 267 -PVY-RDPA--SHPLLPQPVLHPEPQEDSSEECRRRINPQPTVGVLPPFRQCLVIPVSTE 322
P+Y RD S+ L P V+H + S E ++ +V PP +P+ E
Sbjct: 703 PPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPRE 762
>gi|156105699 ring finger and CCCH-type zinc finger domains 2
isoform 2 [Homo sapiens]
Length = 1064
Score = 32.3 bits (72), Expect = 0.63
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 212 PGVSLVATSLPLHRRHSTDTSREHF----FLVCTPQHHVVLHPIPSGALAIPVARSLSW- 266
P SL S+P +ST + R+ + PQ + + P+PSG A W
Sbjct: 643 PESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWR 702
Query: 267 -PVY-RDPA--SHPLLPQPVLHPEPQEDSSEECRRRINPQPTVGVLPPFRQCLVIPVSTE 322
P+Y RD S+ L P V+H + S E ++ +V PP +P+ E
Sbjct: 703 PPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPRE 762
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 32.0 bits (71), Expect = 0.82
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 40/222 (18%)
Query: 118 PQAPDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASP--------CQPLTRAHT-HATR 168
P+AP ++ P ++R T + + P+ A A+P QP+T T ATR
Sbjct: 1090 PEAPLSSELEPFH-PKPKIR-TRKSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATR 1147
Query: 169 MCRPRLHSSTSSPVM-----VRETTGSDPKETDCSLGTVTGGWTFGS--KPGVSLVATSL 221
R T PV+ ++ +T +D T VT G S K ++V T+L
Sbjct: 1148 SRTNRSSVKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVKTPETVVPTAL 1207
Query: 222 PLHRRHSTDT------------SREHFFLVCTPQHHVVLHPI--PSGALAIPVARSLSWP 267
L STD R++ V TP+ V P PS + PV S P
Sbjct: 1208 ELQPSTSTDRPVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPVT---SEP 1264
Query: 268 VY-----RDPASHPLLPQPVLHPEPQEDSSEECRRRINPQPT 304
Y R S P+PV+ P+ S R + P+PT
Sbjct: 1265 TYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPT 1306
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/176 (24%), Positives = 60/176 (34%), Gaps = 17/176 (9%)
Query: 152 RASPCQPLTRAHTHA----------TRMCRPRL---HSSTSSPVM-VRETTGSDPKETDC 197
RASP P R +H+ T+ P L H SSP RE P +
Sbjct: 624 RASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS 683
Query: 198 SLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDTSREHFFLVCTPQHHVV---LHPIPSG 254
T S P V A+S P R+ + ++R + TP+ + P P
Sbjct: 684 PSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQS 743
Query: 255 ALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDSSEECRRRINPQPTVGVLPP 310
+ +RS+S P P PV P + S + PT PP
Sbjct: 744 VRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPP 799
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 31.2 bits (69), Expect = 1.4
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 78 AAGAQLHLQWAEHGQQLQGDDGAQAGPHGRHALHILQLPQ----PQAPDGCRVDVLVLPP 133
+AG Q H+ + GQ G A+AG G+HA+H+ PQ P G V +
Sbjct: 180 SAGRQRHVVHSGVGQ---GQAQAKAGLQGQHAVHLPGWPQGVPLGNGPPGVGQHVCPVLQ 236
Query: 134 ARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPR 173
R GT + L+ P ++ H +CR R
Sbjct: 237 GLPRGPGTQVHLAYGLSSERQAAVPDSQHQVHI--LCRDR 274
>gi|223633957 proline-rich acidic protein 1 isoform 2 [Homo sapiens]
Length = 142
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 246 VVLHPIPSGALAIPVAR---SLSWPVYRDPASHPLLPQP----VLHPEPQEDSSEECRRR 298
VVL P+ L + + +W D H L P+P + HP P+ED EE R R
Sbjct: 60 VVLFPVQKPKLLTTEEKPRGTKAWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEE-RPR 118
Query: 299 INPQPTVGVL 308
+ P VL
Sbjct: 119 LWVMPNHQVL 128
>gi|46852164 mannosidase, alpha, class 2C, member 1 [Homo sapiens]
Length = 1040
Score = 30.4 bits (67), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 55 SISPTWYMVWAWGGEELEVDVGEA-AGAQLHLQWAEHGQQLQGDDG 99
S PTW+ W +E+ + EA G ++HL W G+ L DG
Sbjct: 72 SFGPTWWTCWF----RVELTIPEAWVGQEVHLCWESDGEGLVWRDG 113
>gi|229577273 BUD13 homolog isoform 2 [Homo sapiens]
Length = 485
Score = 30.0 bits (66), Expect = 3.1
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 104 PHGRHALHILQLPQPQAPDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASP-CQPLTRA 162
P R A H P P G R D PP R+R +D + P A SP P R
Sbjct: 150 PSPRRARH--DTPDPSPLRGARHDSDTSPPRRIRHDSSDTSP-PRRARHDSPDPSPPRRP 206
Query: 163 HTHATRMCRPRLHSSTSSPVMVRETTGSDPKETDCS 198
+++ C+ S SSP +++ G ++D S
Sbjct: 207 QHNSSGDCQKATDSDLSSP-RHKQSPGHQDSDSDLS 241
>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
Length = 337
Score = 30.0 bits (66), Expect = 3.1
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 40 NISRAPQKNSMCWSVSISPTWYMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDG 99
N+S A ++ ++P + G+ L+V V A GAQ Q + LQ
Sbjct: 94 NMSAAATAATLALPAGVTPV-QQILTNSGQLLQV-VRAANGAQYIFQ-PQQSVVLQQQVI 150
Query: 100 AQAGPHGRHALHILQLPQPQAPDGCRVDV-LVLPPARVRSTGTDAAVIPWLAGRASPCQP 158
Q P G A I Q+ P P G +++ P ++ TG VIP +P Q
Sbjct: 151 PQMQPGGVQAPVIQQVLAP-LPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQ- 208
Query: 159 LTRAHTHATRMCRPRLH-SSTSSPVMVR-ETTGSDPKETD 196
A AT +P+ + T +P++++ + TG E D
Sbjct: 209 ---AQITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEED 245
>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
Length = 376
Score = 30.0 bits (66), Expect = 3.1
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 40 NISRAPQKNSMCWSVSISPTWYMVWAWGGEELEVDVGEAAGAQLHLQWAEHGQQLQGDDG 99
N+S A ++ ++P + G+ L+V V A GAQ Q + LQ
Sbjct: 133 NMSAAATAATLALPAGVTPV-QQILTNSGQLLQV-VRAANGAQYIFQ-PQQSVVLQQQVI 189
Query: 100 AQAGPHGRHALHILQLPQPQAPDGCRVDV-LVLPPARVRSTGTDAAVIPWLAGRASPCQP 158
Q P G A I Q+ P P G +++ P ++ TG VIP +P Q
Sbjct: 190 PQMQPGGVQAPVIQQVLAP-LPGGISPQTGVIIQPQQILFTGNKTQVIPTTVAAPTPAQ- 247
Query: 159 LTRAHTHATRMCRPRLH-SSTSSPVMVR-ETTGSDPKETD 196
A AT +P+ + T +P++++ + TG E D
Sbjct: 248 ---AQITATGQQQPQAQPAQTQAPLVLQVDGTGDTSSEED 284
>gi|58743365 ring finger protein 157 [Homo sapiens]
Length = 679
Score = 30.0 bits (66), Expect = 3.1
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 282 VLHPEPQEDSSEECRRRINPQPTVGVLPPFRQCLVIPVSTEKPLASGTLALLLSCNGCP 340
VLH E E S E +++ +P+V L +C V P S L+S SC G P
Sbjct: 443 VLHEEEDEHSCSESETQLSQRPSVQHLG--EECGVTPESENLTLSSSGAIDQSSCTGTP 499
>gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 30.0 bits (66), Expect = 3.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 152 RASPCQPLTRAHTHATRMCRPRLHSSTSSPVMVRETTGSDPKETDCSLGTVT 203
++ P P++ TR +PRLH PV T + K +CSLGT T
Sbjct: 520 KSEPRPPISSPRAPQTRAVKPRLH-----PVKPMNATAT--KVANCSLGTAT 564
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 30.0 bits (66), Expect = 3.1
Identities = 55/225 (24%), Positives = 83/225 (36%), Gaps = 35/225 (15%)
Query: 115 LPQPQAPDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHATRMCRPRL 174
L QA R +L+ P T T A V P L G SP +P T A + +
Sbjct: 179 LTASQAQMYLRAQMLIFTP-----TATVATVQPEL-GTGSPARPPTPAQVQNLTLRTQQT 232
Query: 175 HSSTSS---------PVMVRETT--GSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPL 223
++ +S P + + T GS P T G+KPG++ + +
Sbjct: 233 PAAAASGPTPTQPVLPSLALKPTPGGSQPLPTPAQSRNTAQASPAGAKPGIA--DSVMEP 290
Query: 224 HRRHSTDTSREHFFLVCTPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQP-V 282
H++ ++S + + + L S + A L P Y H LLPQP
Sbjct: 291 HKKGDGNSS-----VPGSMEGRAGL----SRTVPAVAAHPLIAPAYAQLQPHQLLPQPSS 341
Query: 283 LHPEPQEDSSEECRRRINPQPTVGVLPPFRQCLVIPVSTEKPLAS 327
H +PQ ++ PQP PP + V+ LAS
Sbjct: 342 KHLQPQFVIQQQ------PQPQQQQPPPQQSRPVLQAEPHPQLAS 380
>gi|223633959 proline-rich acidic protein 1 isoform 1 [Homo sapiens]
Length = 151
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 265 SWPVYRDPASHPLLPQP----VLHPEPQEDSSEECRRRINPQPTVGVL 308
+W D H L P+P + HP P+ED EE R R+ P VL
Sbjct: 91 AWMETEDTLGHVLSPEPDHDSLYHPPPEEDQGEE-RPRLWVMPNHQVL 137
>gi|70906435 fibrinogen, beta chain preproprotein [Homo sapiens]
Length = 491
Score = 29.6 bits (65), Expect = 4.1
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Query: 107 RHALHILQLPQPQAPDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQPLTRAHTHA 166
+H L+I + P RV +L R + ++ V + +PC +
Sbjct: 178 KHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVS 237
Query: 167 TRMCRP--RLHSSTSSPVMVRETTGSDPKETDCSLGTVTGGWT 207
+ C R TS +++ + P C + T GGWT
Sbjct: 238 GKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWT 280
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 100 AQAGPHGRHALHIL--QLPQPQAPDGCRVDVLVLPPARVRSTGTDAAVIPWLAGRASPCQ 157
A+ HG HA H+L QLP P P +PPA R A AG ++P
Sbjct: 123 AKGPAHGLHASHVLQPQLPPPLQP-------RAVPPAAPRRCEAAPATPGVPAGGSAPAC 175
Query: 158 PLTRA 162
PL A
Sbjct: 176 PLLLA 180
>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 35 SSSWVNISRAPQKNSMCWSVSISPTWYMVWAWGGEELEVDVGEAAGA----QLHLQWAEH 90
+SSW + R P ++ + PTW + + +G A G LHLQ E
Sbjct: 179 ASSWAGVPRQPL------ALDLRPTWK------APDARLALGSARGPGRRLALHLQVPEG 226
Query: 91 GQQLQGDDGAQAGPHGR 107
+QL GAQ H R
Sbjct: 227 ARQLGPRTGAQPSRHRR 243
>gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 4.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 35 SSSWVNISRAPQKNSMCWSVSISPTWYMVWAWGGEELEVDVGEAAGA----QLHLQWAEH 90
+SSW + R P ++ + PTW + + +G A G LHLQ E
Sbjct: 179 ASSWAGVPRQPL------ALDLRPTWK------APDARLALGSARGPGRRLALHLQVPEG 226
Query: 91 GQQLQGDDGAQAGPHGR 107
+QL GAQ H R
Sbjct: 227 ARQLGPRTGAQPSRHRR 243
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 29.6 bits (65), Expect = 4.1
Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 18/130 (13%)
Query: 96 GDDGAQAGPHGRHALHILQLPQPQAPDGCRVDVLV-LPPARVRSTGTDAAVIPWLAGRAS 154
G GA+A GR + QP A G PA RS AV +G +
Sbjct: 37 GGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARA 96
Query: 155 PCQPLTRAHTHATRMCRPRLHSSTSSPVMVRETTGSDPKETDCSLGTVTGGWTFGSKPGV 214
P + + +S+S P +++ S P++ G GS G
Sbjct: 97 AQSPFS-------------IPNSSSGPYGSQDSVHSSPEDGGGGRDRPVG----GSPGGP 139
Query: 215 SLVATSLPLH 224
LV SLP H
Sbjct: 140 RLVIGSLPAH 149
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 29.6 bits (65), Expect = 4.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 249 HPIPSGALAIPVARSLSW--PVYRDPASHPLLPQPVLHPEPQE 289
HP G+ PV SLS P + PA+ L P VLH +P +
Sbjct: 153 HPASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQ 195
>gi|237820622 pleckstrin homology domain containing, family N member
1 isoform a [Homo sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 5.3
Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 91 GQQLQGDDGAQAGPHGR--HALHILQLPQP------QAPDGCRVDVLVLPPARVRSTGTD 142
G Q D G A P R H+L +P PD D + R +
Sbjct: 346 GGQTSWDSGCLAPPSTRTSHSLPESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSG 405
Query: 143 AAVIPWLAGRASPCQPLTRAHTHATRMCRPRLHSSTSSPVMVRETTGS 190
++ P RA P+T H T++ R L SS +P ET+ S
Sbjct: 406 SSRSPGSKARAEGRGPVTPLHLDLTQLHRLSLESSPDAPDHTSETSHS 453
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 5.3
Identities = 43/183 (23%), Positives = 59/183 (32%), Gaps = 16/183 (8%)
Query: 128 VLVLPPARVRSTGTDAAVIPWLAGR---ASPCQPLTRAHTHATRMCRPRLHSSTSSPVM- 183
+++ P R R D IP GR + A A + R T P+
Sbjct: 258 MVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETVLPIKK 317
Query: 184 --VRETTGSDPKETDCSLGTVTGGWTFGSKPGVSLVATSLPLHRRHSTDTSREHFFLVCT 241
RET + KE L T G K G L P + +
Sbjct: 318 RKTRETVSIEVKEVVKPLLVST----LGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSP 373
Query: 242 P--QHHVVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQEDSSEECRRRI 299
P +HH H S +P+ L P +S P PEPQ+ SS C+
Sbjct: 374 PKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSE----DPTSPPEPQDLSSSVCKEEK 429
Query: 300 NPQ 302
P+
Sbjct: 430 MPR 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,029,674
Number of Sequences: 37866
Number of extensions: 936333
Number of successful extensions: 2718
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2690
Number of HSP's gapped (non-prelim): 68
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.