Guide to the Human Genome
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Name: LOC100291385 Sequence: fasta or formatted (341aa) NCBI GI: 239750425
Description:

PREDICTED: hypothetical protein XP_002347391

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         26           2
 C cysteine            2.9         10           1
 D aspartate           3.2         11           2
 E glutamate           4.1         14           2
 F phenylalanine       1.2          4           2
 G glycine             8.2         28           2
 H histidine           5.0         17           2
 I isoleucine          2.3          8           1
 K lysine              1.2          4           1
 L leucine            10.0         34           3
 M methionine          2.1          7           1
 N asparagine          2.1          7           1
 P proline            10.6         36           2
 Q glutamine           5.6         19           2
 R arginine            6.2         21           3
 S serine              9.7         33           3
 T threonine           6.2         21           2
 V valine              7.9         27           2
 W tryptophan          3.2         11           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347391 
LOC100293952          0.529   PREDICTED: hypothetical protein 
LOC100287839          0.529   PREDICTED: hypothetical protein XP_002343254 
FAM65A                0.017   hypothetical protein LOC79567 
EP300                 0.017   E1A binding protein p300 
ADAM33                0.013   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.013   ADAM metallopeptidase domain 33 isoform beta preprop...
MUC6                  0.011   mucin 6, gastric 
RC3H2                 0.010   ring finger and CCCH-type zinc finger domains 2 iso...
RC3H2                 0.010   ring finger and CCCH-type zinc finger domains 2 iso...
MDC1                  0.010   mediator of DNA-damage checkpoint 1 
SRRM1                 0.010   serine/arginine repetitive matrix 1 
LOC100294438          0.009   PREDICTED: hypothetical protein 
PRAP1                 0.007   proline-rich acidic protein 1 isoform 2 
MAN2C1                0.007   mannosidase, alpha, class 2C, member 1 
BUD13                 0.007   BUD13 homolog isoform 2 
GTF2A1                0.007   TFIIA alpha, p55 isoform 2 
GTF2A1                0.007   TFIIA alpha, p55 isoform 1 
RNF157                0.007   ring finger protein 157 
RAB11FIP1             0.007   RAB11 family interacting protein 1 isoform 1 
PHC2                  0.007   polyhomeotic-like 2 isoform a 
PRAP1                 0.007   proline-rich acidic protein 1 isoform 1 
FGB                   0.007   fibrinogen, beta chain preproprotein 
HOXA4                 0.007   homeobox A4 
LOC100129098          0.007   PREDICTED: hypothetical protein 
LOC100129098          0.007   PREDICTED: hypothetical protein 
ZNRF2                 0.007   zinc finger/RING finger 2 
PRR12                 0.007   proline rich 12 
PLEKHN1               0.006   pleckstrin homology domain containing, family N mem...
MECP2                 0.006   methyl CpG binding protein 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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