Guide to the Human Genome
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Name: FGB Sequence: fasta or formatted (491aa) NCBI GI: 70906435
Description:

fibrinogen, beta chain preproprotein

Referenced in:

Coagulation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         23           3
 C cysteine            2.4         12           1
 D aspartate           5.7         28           2
 E glutamate           6.1         30           2
 F phenylalanine       2.4         12           2
 G glycine             8.6         42           3
 H histidine           1.8          9           1
 I isoleucine          3.3         16           2
 K lysine              7.3         36           2
 L leucine             7.3         36           6
 M methionine          3.7         18           1
 N asparagine          6.5         32           3
 P proline             4.7         23           3
 Q glutamine           5.3         26           2
 R arginine            5.7         28           1
 S serine              6.9         34           4
 T threonine           4.7         23           1
 V valine              5.7         28           2
 W tryptophan          2.9         14           2
 Y tyrosine            4.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibrinogen, beta chain preproprotein 
FGG                   0.207   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.207   fibrinogen, gamma chain isoform gamma-A precursor [H...
FGA                   0.180   fibrinogen, alpha polypeptide isoform alpha-E preprop...
FGL1                  0.165   fibrinogen-like 1 precursor 
FGL1                  0.165   fibrinogen-like 1 precursor 
FGL1                  0.165   fibrinogen-like 1 precursor 
FGL1                  0.165   fibrinogen-like 1 precursor 
ANGPTL2               0.163   angiopoietin-like 2 precursor 
ANGPTL1               0.155   angiopoietin-like 1 precursor 
ANGPTL7               0.152   angiopoietin-like 7 
ANGPTL6               0.144   angiopoietin-like 6 
ANGPT2                0.142   angiopoietin 2 isoform b precursor 
ANGPT4                0.141   angiopoietin 4 
FGL2                  0.141   fibrinogen-like 2 precursor 
ANGPT2                0.140   angiopoietin 2 isoform c precursor 
ANGPT2                0.140   angiopoietin 2 isoform a precursor 
FIBCD1                0.138   fibrinogen C domain containing 1 
FIBCD1                0.138   fibrinogen C domain containing 1 
ANGPT1                0.137   angiopoietin 1 
FCN1                  0.134   ficolin 1 precursor 
TNN                   0.131   tenascin N 
FCN2                  0.129   ficolin 2 isoform b precursor 
FCN2                  0.129   ficolin 2 isoform a precursor 
FCN3                  0.129   ficolin 3 isoform 2 precursor 
FCN3                  0.129   ficolin 3 isoform 1 precursor 
TNR                   0.126   tenascin R 
MFAP4                 0.119   microfibrillar-associated protein 4 
TNXB                  0.116   tenascin XB isoform 2 
TNXB                  0.116   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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