Guide to the Human Genome
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Name: LOC100293952 Sequence: fasta or formatted (667aa) NCBI GI: 239755911
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         62           2
 C cysteine            3.3         22           2
 D aspartate           3.0         20           2
 E glutamate           4.8         32           3
 F phenylalanine       1.9         13           1
 G glycine            11.1         74           2
 H histidine           4.0         27           1
 I isoleucine          1.9         13           1
 K lysine              1.3          9           2
 L leucine            12.3         82           3
 M methionine          1.5         10           1
 N asparagine          2.4         16           1
 P proline             7.2         48           2
 Q glutamine           8.2         55           2
 R arginine            5.2         35           1
 S serine              8.2         55           4
 T threonine           3.6         24           2
 V valine              6.3         42           2
 W tryptophan          3.3         22           1
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287839          0.441   PREDICTED: hypothetical protein XP_002343254 
LOC100291385          0.268   PREDICTED: hypothetical protein XP_002347391 
SLC34A1               0.007   solute carrier family 34 (sodium phosphate), member...
LOC100294438          0.007   PREDICTED: hypothetical protein 
C14orf115             0.005   hypothetical protein LOC55237 
SRCAP                 0.005   Snf2-related CBP activator protein 
ADRM1                 0.004   adhesion regulating molecule 1 precursor 
ADRM1                 0.004   adhesion regulating molecule 1 precursor 
MTSS1L                0.004   metastasis suppressor 1-like 
MLL4                  0.004   myeloid/lymphoid or mixed-lineage leukemia 4 
PAPLN                 0.004   papilin 
MAN2C1                0.004   mannosidase, alpha, class 2C, member 1 
KIAA0754              0.004   hypothetical protein LOC643314 
HOXA4                 0.004   homeobox A4 
SSFA2                 0.004   sperm specific antigen 2 isoform 1 
SSFA2                 0.004   sperm specific antigen 2 isoform 2 
LOC100129098          0.004   PREDICTED: hypothetical protein 
TTC34                 0.004   PREDICTED: tetratricopeptide repeat domain 34 [Homo...
LOC100129098          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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