Guide to the Human Genome
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Name: PRAP1 Sequence: fasta or formatted (151aa) NCBI GI: 223633959
Description:

proline-rich acidic protein 1 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {142aa} proline-rich acidic protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          6           1
 C cysteine            0.0          0           0
 D aspartate           6.0          9           2
 E glutamate          10.6         16           2
 F phenylalanine       0.7          1           1
 G glycine             6.0          9           1
 H histidine           4.6          7           1
 I isoleucine          2.0          3           1
 K lysine              6.0          9           1
 L leucine            11.3         17           3
 M methionine          2.6          4           1
 N asparagine          0.7          1           1
 P proline            13.9         21           3
 Q glutamine           6.0          9           1
 R arginine            4.6          7           2
 S serine              2.6          4           1
 T threonine           4.0          6           2
 V valine              9.9         15           3
 W tryptophan          3.3          5           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline-rich acidic protein 1 isoform 1 
PRAP1                 0.909   proline-rich acidic protein 1 isoform 2 
PLEKHO2               0.027   pleckstrin homology domain containing, family O memb...
SON                   0.023   SON DNA-binding protein isoform F 
SON                   0.023   SON DNA-binding protein isoform B 
AKAP1                 0.023   A-kinase anchor protein 1 precursor 
C1orf62               0.017   hypothetical protein LOC254268 
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.017   SWI/SNF-related matrix-associated actin-dependent re...
LOC100291385          0.017   PREDICTED: hypothetical protein XP_002347391 
PCK1                  0.017   cytosolic phosphoenolpyruvate carboxykinase 1 [Homo...
RYR2                  0.013   cardiac muscle ryanodine receptor 
LOC727838             0.013   PREDICTED: similar to cancer/testis antigen family ...
ZYX                   0.013   zyxin 
ZYX                   0.013   zyxin 
DDIT3                 0.013   DNA-damage-inducible transcript 3 
DBX1                  0.013   developing brain homeobox 1 
ACACB                 0.010   acetyl-Coenzyme A carboxylase beta 
OPTC                  0.010   opticin precursor 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform e 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform f 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform d 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform c 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform b 
OSBPL9                0.010   oxysterol binding protein-like 9 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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