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Search of human proteins with 239750326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4
[Homo sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo... 219 3e-58
gi|24497538 homeobox C4 [Homo sapiens] 167 1e-42
gi|24497540 homeobox C4 [Homo sapiens] 167 1e-42
gi|148613882 homeobox A4 [Homo sapiens] 92 7e-20
gi|13273315 homeobox B4 [Homo sapiens] 91 1e-19
gi|23397672 homeobox D4 [Homo sapiens] 90 4e-19
gi|24497556 homeobox A7 [Homo sapiens] 78 2e-15
gi|4504469 homeobox B5 [Homo sapiens] 73 5e-14
gi|24497517 homeobox A5 [Homo sapiens] 72 7e-14
gi|23503237 homeobox B6 [Homo sapiens] 68 1e-12
gi|13489077 homeobox A6 [Homo sapiens] 67 2e-12
gi|85068580 homeobox B7 [Homo sapiens] 67 4e-12
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 66 5e-12
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 66 5e-12
gi|11321638 homeobox C5 [Homo sapiens] 65 9e-12
gi|15029506 homeobox D8 [Homo sapiens] 59 6e-10
gi|84570137 homeobox B3 [Homo sapiens] 59 6e-10
gi|13273317 homeobox B8 [Homo sapiens] 59 8e-10
gi|12056969 homeobox C8 [Homo sapiens] 59 1e-09
gi|19923391 homeobox D3 [Homo sapiens] 54 3e-08
gi|24497515 homeobox A3 isoform b [Homo sapiens] 52 8e-08
gi|24497513 homeobox A3 isoform a [Homo sapiens] 52 8e-08
gi|13562112 homeobox A3 isoform a [Homo sapiens] 52 8e-08
gi|89257348 homeo box HB9 [Homo sapiens] 52 1e-07
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 51 2e-07
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 51 2e-07
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 51 2e-07
gi|33457326 GS homeobox 1 [Homo sapiens] 51 2e-07
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 50 4e-07
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 50 4e-07
>gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo
sapiens]
Length = 105
Score = 219 bits (559), Expect = 3e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MGTRESCLLFIHRNFHRSPTDSHFRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 60
MGTRESCLLFIHRNFHRSPTDSHFRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
Sbjct: 1 MGTRESCLLFIHRNFHRSPTDSHFRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 60
Query: 61 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL 105
TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
Sbjct: 61 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL 105
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 167 bits (424), Expect = 1e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
Sbjct: 184 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 243
Query: 85 EDHSQSATPPEQQRAEDITRL 105
EDHSQSATPPEQQRAEDITRL
Sbjct: 244 EDHSQSATPPEQQRAEDITRL 264
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 167 bits (424), Expect = 1e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
Sbjct: 184 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 243
Query: 85 EDHSQSATPPEQQRAEDITRL 105
EDHSQSATPPEQQRAEDITRL
Sbjct: 244 EDHSQSATPPEQQRAEDITRL 264
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/69 (65%), Positives = 52/69 (75%), Gaps = 5/69 (7%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIAH+LCLSERQ+KIWFQNRRMKWKKDH+LPNTK+RS+ A A SA PG +
Sbjct: 243 RRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPGKA 297
Query: 85 EDHSQSATP 93
+ S P
Sbjct: 298 QTQSPHLHP 306
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 91.3 bits (225), Expect = 1e-19
Identities = 40/48 (83%), Positives = 45/48 (93%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAA 72
RRR+EIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK+RS AG+A
Sbjct: 190 RRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSGGAAGSA 237
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 89.7 bits (221), Expect = 4e-19
Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK RS+ S+ S+++ +S
Sbjct: 182 RRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------SSSSSSSCSSS 234
Query: 85 EDHSQSATPPEQQRAEDITRL 105
SQ P + D+T L
Sbjct: 235 VAPSQHLQPMAKDHHTDLTTL 255
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 77.8 bits (190), Expect = 2e-15
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+H+ +A P GA PS + A +
Sbjct: 158 RRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK-DEGPTAAAAPEGAVPSAAATAAADKA 216
Query: 85 EDHSQSATPPEQQ 97
++ +++
Sbjct: 217 DEEDDDEEEEDEE 229
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 72.8 bits (177), Expect = 5e-14
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPA 69
RRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L + + +A A
Sbjct: 222 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 72.4 bits (176), Expect = 7e-14
Identities = 32/42 (76%), Positives = 38/42 (90%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 66
RRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L + + +A
Sbjct: 223 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 68.2 bits (165), Expect = 1e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 66
RRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+ +L + SA
Sbjct: 174 RRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 67.4 bits (163), Expect = 2e-12
Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 4/46 (8%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 70
RRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L + S P+G
Sbjct: 183 RRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 66.6 bits (161), Expect = 4e-12
Identities = 28/33 (84%), Positives = 33/33 (100%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 57
RRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+++
Sbjct: 165 RRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 66.2 bits (160), Expect = 5e-12
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIA++LCL+ERQIKIWFQNRRMKWKK+ L T S GA +L
Sbjct: 87 RRRIEIANALCLTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------G 138
Query: 85 EDHSQSATPPEQQR 98
++ + T E+Q+
Sbjct: 139 KEEKREETEEEKQK 152
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 66.2 bits (160), Expect = 5e-12
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
RRRIEIA++LCL+ERQIKIWFQNRRMKWKK+ L T S GA +L
Sbjct: 169 RRRIEIANALCLTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------G 220
Query: 85 EDHSQSATPPEQQR 98
++ + T E+Q+
Sbjct: 221 KEEKREETEEEKQK 234
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 65.5 bits (158), Expect = 9e-12
Identities = 28/34 (82%), Positives = 33/34 (97%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRL 58
RRRIEIA++LCL+ERQIKIWFQNRRMKWKKD ++
Sbjct: 183 RRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKM 216
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 59.3 bits (142), Expect = 6e-10
Identities = 23/32 (71%), Positives = 31/32 (96%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH 56
+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 225 KRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 59.3 bits (142), Expect = 6e-10
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA--PPAGAAPSTLSAATPGT 83
RR+E+A+ L LSERQIKIWFQNRRMK+KKD + S PAG+ P + +
Sbjct: 217 RRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFM 276
Query: 84 SEDHS-----QSATPP 94
+ HS +S +PP
Sbjct: 277 NALHSMTPSYESPSPP 292
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 58.9 bits (141), Expect = 8e-10
Identities = 25/41 (60%), Positives = 36/41 (87%), Gaps = 3/41 (7%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 62
+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ + P++K
Sbjct: 174 KRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 58.5 bits (140), Expect = 1e-09
Identities = 25/41 (60%), Positives = 35/41 (85%), Gaps = 3/41 (7%)
Query: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 62
+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ +LP +
Sbjct: 177 KRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR 217
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 53.9 bits (128), Expect = 3e-08
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 7/54 (12%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKD-------HRLPNTKVRSAPPAGAA 72
RR+E+A+ L L+ERQIKIWFQNRRMK+KKD H + +PP G A
Sbjct: 223 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPERSPPLGGA 276
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 52.4 bits (124), Expect = 8e-08
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 57
RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 62 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 52.4 bits (124), Expect = 8e-08
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 57
RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 220 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 52.4 bits (124), Expect = 8e-08
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 57
RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 220 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 51.6 bits (122), Expect = 1e-07
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP---AGAAPSTLSAATPG 82
+R E+A SL L+E Q+KIWFQNRRMKWK+ + + A G A PG
Sbjct: 270 KRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPG 329
Query: 83 TSE 85
E
Sbjct: 330 AEE 332
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 51.2 bits (121), Expect = 2e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKK 54
RR EIA +L LSERQ+K+WFQNRRMKWK+
Sbjct: 85 RRYEIAVNLDLSERQVKVWFQNRRMKWKR 113
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 51.2 bits (121), Expect = 2e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKK 54
RR EIA +L LSERQ+K+WFQNRRMKWK+
Sbjct: 200 RRYEIAVNLDLSERQVKVWFQNRRMKWKR 228
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 50.8 bits (120), Expect = 2e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKD 55
RR+E+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 175 RRVELAVMLNLTERHIKIWFQNRRMKWKKE 204
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 50.8 bits (120), Expect = 2e-07
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPST------LSAA 79
RRIEIA L LSE+Q+KIWFQNRR+K KK+ + N + AG S S +
Sbjct: 176 RRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLS 235
Query: 80 TPGTSEDHSQSATPPEQQRAED 101
+ SED + P +D
Sbjct: 236 SAKCSEDDDELPMSPSSSGKDD 257
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 50.1 bits (118), Expect = 4e-07
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 26 RRIEIAHSLCLSERQIKIWFQNRRMKWKK 54
RR EIA +L L+ERQ+K+WFQNRRMKWK+
Sbjct: 216 RRYEIAVNLDLTERQVKVWFQNRRMKWKR 244
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 50.1 bits (118), Expect = 4e-07
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 27 RIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGT 83
R+ +A SL L+E Q+KIWFQNRR KWKK N ++ P G A PGT
Sbjct: 692 RLNLALSLSLTETQVKIWFQNRRTKWKKQ----NPGADTSAPTGGGGGPGPGAGPGT 744
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,943,853
Number of Sequences: 37866
Number of extensions: 211121
Number of successful extensions: 1895
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 428
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.