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Search of human proteins with 239750117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750117 PREDICTED: hypothetical protein [Homo sapiens] 658 0.0
gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo ... 268 5e-72
gi|117320535 proline-rich protein 3 isoform a [Homo sapiens] 34 0.15
gi|239757258 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|239751759 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|239746259 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|122937271 WAS protein homolog associated with actin, golgi me... 34 0.19
gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens] 33 0.33
gi|239756427 PREDICTED: similar to 3-phosphoinositide dependent ... 33 0.33
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 33 0.33
gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens] 33 0.33
gi|223718196 perilipin [Homo sapiens] 33 0.43
gi|223718203 perilipin [Homo sapiens] 33 0.43
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 33 0.43
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 33 0.43
gi|156415988 zinc finger and BTB domain containing 7B [Homo sapi... 33 0.43
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 33 0.43
gi|239752949 PREDICTED: similar to kruppel-related zinc finger p... 33 0.43
gi|239752947 PREDICTED: similar to kruppel-related zinc finger p... 33 0.43
gi|16306552 semaphorin Y [Homo sapiens] 32 0.56
gi|145309315 G protein-coupled receptor 62 [Homo sapiens] 32 0.56
gi|187761324 shootin1 isoform a [Homo sapiens] 32 0.73
gi|50511340 shootin1 isoform b [Homo sapiens] 32 0.73
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 32 0.96
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 32 0.96
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 32 0.96
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 32 0.96
gi|47680169 3-phosphoinositide dependent protein kinase-1 isofor... 32 0.96
gi|4505695 3-phosphoinositide dependent protein kinase-1 isoform... 32 0.96
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens] 32 0.96
>gi|239750117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 658 bits (1698), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKS 60
MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKS
Sbjct: 1 MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKS 60
Query: 61 SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT 120
SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT
Sbjct: 61 SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT 120
Query: 121 MQARVGVGAHIARWCLRICLLACRGGPVSLATAGPVIFRAGTQDHRQSSVRPERRLSVLA 180
MQARVGVGAHIARWCLRICLLACRGGPVSLATAGPVIFRAGTQDHRQSSVRPERRLSVLA
Sbjct: 121 MQARVGVGAHIARWCLRICLLACRGGPVSLATAGPVIFRAGTQDHRQSSVRPERRLSVLA 180
Query: 181 GVRGFPWPSQTPPSLKGPVLIPEVVVFLLWSLKHTGMALGQSHVVTTVTGVCLSPTRGLW 240
GVRGFPWPSQTPPSLKGPVLIPEVVVFLLWSLKHTGMALGQSHVVTTVTGVCLSPTRGLW
Sbjct: 181 GVRGFPWPSQTPPSLKGPVLIPEVVVFLLWSLKHTGMALGQSHVVTTVTGVCLSPTRGLW 240
Query: 241 LEGQLKRHPCPLMSPWRPRVTLLEAPSCPCPTASIVPFSQSQELVRAARTPPAQDARGWA 300
LEGQLKRHPCPLMSPWRPRVTLLEAPSCPCPTASIVPFSQSQELVRAARTPPAQDARGWA
Sbjct: 241 LEGQLKRHPCPLMSPWRPRVTLLEAPSCPCPTASIVPFSQSQELVRAARTPPAQDARGWA 300
Query: 301 LPAAMTTSGWMAES 314
LPAAMTTSGWMAES
Sbjct: 301 LPAAMTTSGWMAES 314
>gi|239744425 PREDICTED: hypothetical protein XP_002343141 [Homo
sapiens]
Length = 228
Score = 268 bits (685), Expect = 5e-72
Identities = 125/129 (96%), Positives = 127/129 (98%)
Query: 1 MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKS 60
MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGL+S
Sbjct: 1 MAWWIRLYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLRS 60
Query: 61 SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT 120
SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT
Sbjct: 61 SLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGT 120
Query: 121 MQARVGVGA 129
MQARVG +
Sbjct: 121 MQARVGAAS 129
>gi|117320535 proline-rich protein 3 isoform a [Homo sapiens]
Length = 188
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 46 EPCSEAHSRAAGLKSSL--PVLSCPPPATIPPRPEPTLLTGLCP-SSPHGVGVWGILAFP 102
+P S H G + L P+LS PPP P + GL P SSP+G G WG+ A P
Sbjct: 53 DPKSALHRGPPGSRGPLIPPLLSLPPP----PWGRGPIRRGLGPRSSPYGRGWWGVNAEP 108
Query: 103 RPP 105
P
Sbjct: 109 PFP 111
>gi|239757258 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 33.9 bits (76), Expect = 0.19
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 SCPPPATIPPRPEPTLLTGLCPSSPHGV 93
SCP A+ PP+ P L+ L P PHGV
Sbjct: 8 SCPRLASAPPKGSPPLVKPLAPQRPHGV 35
>gi|239751759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 33.9 bits (76), Expect = 0.19
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 SCPPPATIPPRPEPTLLTGLCPSSPHGV 93
SCP A+ PP+ P L+ L P PHGV
Sbjct: 8 SCPRLASAPPKGSPPLVKPLAPQRPHGV 35
>gi|239746259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 33.9 bits (76), Expect = 0.19
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 SCPPPATIPPRPEPTLLTGLCPSSPHGV 93
SCP A+ PP+ P L+ L P PHGV
Sbjct: 8 SCPRLASAPPKGSPPLVKPLAPQRPHGV 35
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/102 (31%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 25 PDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEPTLLTG 84
P C +CH Q + HS+++ S P PPP PP P P L
Sbjct: 607 PKCQNCH-----GNIPVQVFVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPPPPPPLRA 661
Query: 85 LCPSSPHGVGVWGILAF--------PRPPVLSLPLESCRDSL 118
L SS L F PRP V P E RDSL
Sbjct: 662 LSSSSQ--AATHQNLGFRAPVKDDQPRPLVCESPAERPRDSL 701
>gi|16306580 F-box and leucine-rich repeat protein 11 [Homo sapiens]
Length = 1162
Score = 33.1 bits (74), Expect = 0.33
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 26 DCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEPTLLTGL 85
+CP C+ E++ + + E+ A K P+ SC P T PP PT + L
Sbjct: 671 ECPKCY----QEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPH-SPTSMLQL 725
Query: 86 C--PSSPHGV 93
P SP G+
Sbjct: 726 IHDPVSPRGM 735
>gi|239756427 PREDICTED: similar to 3-phosphoinositide dependent
protein kinase-1 [Homo sapiens]
Length = 471
Score = 33.1 bits (74), Expect = 0.33
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 39 TEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGI 98
T +G + C A ++SS+ + SCP P+ + + E + G+ S G + G
Sbjct: 14 TADRGAQLACPVLGYDAVPIQSSVVLCSCPSPSMVRTQTESSTPPGIPGGSRQGPAMDGT 73
Query: 99 LAFPRPPVLSL 109
A PRP SL
Sbjct: 74 AAEPRPGAGSL 84
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 33.1 bits (74), Expect = 0.33
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 7 LYSLCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEA--------HSRAAGL 58
LY L ++L A + P P + + + + ++ + CSEA H R L
Sbjct: 579 LYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPL 638
Query: 59 KSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSL 118
+ P +CP PA +PP PE P P G P P V S+P S
Sbjct: 639 QPMGP--TCPTPAPVPP-PEAPSPFRAPPFHPPG---------PMPSVGSMPSAGPMPSA 686
Query: 119 GTM 121
G M
Sbjct: 687 GPM 689
>gi|118421085 leucine-rich repeat kinase 1 [Homo sapiens]
Length = 1910
Score = 33.1 bits (74), Expect = 0.33
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 26 DCPSCHLYFIDEETEAQGL---------------REPCSEAHSRAAGLKSSLPVLSCPPP 70
D S Y ++ E +A GL EP S+ S + G +S LP LS P
Sbjct: 1552 DSASPQTYEVELEMQASGLPKLRIKKIDPSSSLEAEPLSKEES-SLGEESFLPALSMPRA 1610
Query: 71 ATIPPRPEPTLLTGLCPSSPH 91
+ +PEPT ++ CP H
Sbjct: 1611 SRSLSKPEPTYVSPPCPRLSH 1631
>gi|223718196 perilipin [Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 28 PSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCP 87
P L ++ E+E + + P +E R A ++S + P PA +P +L + P
Sbjct: 403 PLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSP 462
Query: 88 SSPHGVGVWGILAFPRPPVLSLP 110
+P G G+ +A P P P
Sbjct: 463 GAPPGPGLEDEVATPAAPRPGFP 485
>gi|223718203 perilipin [Homo sapiens]
Length = 522
Score = 32.7 bits (73), Expect = 0.43
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 28 PSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCP 87
P L ++ E+E + + P +E R A ++S + P PA +P +L + P
Sbjct: 403 PLPRLSLMEPESEFRDIDNPPAEVERREAERRASGAPSAGPEPAPRLAQPRRSLRSAQSP 462
Query: 88 SSPHGVGVWGILAFPRPPVLSLP 110
+P G G+ +A P P P
Sbjct: 463 GAPPGPGLEDEVATPAAPRPGFP 485
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 32.7 bits (73), Expect = 0.43
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 68 PPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLS 108
PPP PP P P L G+C SSP + G A PP LS
Sbjct: 599 PPPPPPPPPPPPPLPGGVCISSPPSLP--GGTAISPPPPLS 637
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 32.7 bits (73), Expect = 0.43
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 68 PPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLS 108
PPP PP P P L G+C SSP + G A PP LS
Sbjct: 608 PPPPPPPPPPPPPLPGGVCISSPPSLP--GGTAISPPPPLS 646
>gi|156415988 zinc finger and BTB domain containing 7B [Homo
sapiens]
Length = 539
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 11 CSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPP 70
C +LQ + + P PD C E Q L + S + S P + PPP
Sbjct: 137 CMEILQGSGLEAPSPDEDDC-------ERARQYLEAFATATASGVPNGEDSPPQVPLPPP 189
Query: 71 ATIPPRP 77
PPRP
Sbjct: 190 PPPPPRP 196
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 11 CSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPP 70
C +LQ + + P PD C E Q L + S + S P + PPP
Sbjct: 171 CMEILQGSGLEAPSPDEDDC-------ERARQYLEAFATATASGVPNGEDSPPQVPLPPP 223
Query: 71 ATIPPRP 77
PPRP
Sbjct: 224 PPPPPRP 230
>gi|239752949 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 1 [Homo sapiens]
Length = 539
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 11 CSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPP 70
C +LQ + + P PD C E Q L + S + S P + PPP
Sbjct: 137 CMEILQGSGLEAPSPDEDDC-------ERARQYLEAFATATASGVPNGEDSPPQVPLPPP 189
Query: 71 ATIPPRP 77
PPRP
Sbjct: 190 PPPPPRP 196
>gi|239752947 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 2 [Homo sapiens]
Length = 539
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 11 CSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPP 70
C +LQ + + P PD C E Q L + S + S P + PPP
Sbjct: 137 CMEILQGSGLEAPSPDEDDC-------ERARQYLEAFATATASGVPNGEDSPPQVPLPPP 189
Query: 71 ATIPPRP 77
PPRP
Sbjct: 190 PPPPPRP 196
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 32.3 bits (72), Expect = 0.56
Identities = 44/160 (27%), Positives = 52/160 (32%), Gaps = 25/160 (15%)
Query: 20 VSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPAT---IPPR 76
V P P CP + E L E H K + P P P T +PP
Sbjct: 750 VRPPPPGCPG-------QAVEVTTLEELLRYLHGPQPPRKGAEP----PAPLTSRALPPE 798
Query: 77 PEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRDSLGTMQARVGVGAHIARWCL 136
P P LL G P PH L PP R +L R+GVG
Sbjct: 799 PAPALLGGPSP-RPHECA--SPLRLDVPPEGRCASAPARPALSAPAPRLGVGGG-----R 850
Query: 137 RICLLACRGGPVSLA---TAGPVIFRAGTQDHRQSSVRPE 173
R+ R P L + GP + G H RPE
Sbjct: 851 RLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLLYLGRPE 890
>gi|145309315 G protein-coupled receptor 62 [Homo sapiens]
Length = 368
Score = 32.3 bits (72), Expect = 0.56
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 55 AAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSL 109
AAGL +L +L PP P L GL P P +W +LAF P +L L
Sbjct: 139 AAGLLGALSLLGTPPAPPPAPARCSVLAGGLGPFRP----LWALLAFALPALLLL 189
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 32.0 bits (71), Expect = 0.73
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 24 DPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEP--TL 81
+ D L + + E +A+ L+ E R ++S+P PPP PP P P +L
Sbjct: 314 EEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSL 373
Query: 82 LTGLCP-SSPHGVGVWGILAFPRPPVLSLPLESCRDSLGTMQARVGVGAHI 131
++ + S P G G A +P + R ++ M R+ G H+
Sbjct: 374 MSMIRKRSHPSGSGAKKEKA-TQPETTEEVTDLKRQAVEEMMDRIKKGVHL 423
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 32.0 bits (71), Expect = 0.73
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 24 DPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPPPATIPPRPEP--TL 81
+ D L + + E +A+ L+ E R ++S+P PPP PP P P +L
Sbjct: 314 EEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSL 373
Query: 82 LTGLCP-SSPHGVGVWGILAFPRPPVLSLPLESCRDSLGTMQARVGVGAHI 131
++ + S P G G A +P + R ++ M R+ G H+
Sbjct: 374 MSMIRKRSHPSGSGAKKEKA-TQPETTEEVTDLKRQAVEEMMDRIKKGVHL 423
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 0.96
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 10 LCSSVLQATAVSKPDPDCPSCHLYFIDEETEAQGLREPCSEAHSRAAGLKSSLPVLSCPP 69
LCS L+ + S +P+ + EA+GL E A AG + PP
Sbjct: 89 LCSPSLEESTSSPSEPEDVIDLVQPAPGAGEAEGLPEGTQAAGPAPAGKEHRKQDAETPP 148
Query: 70 PATIPPRPEPTLLTGLCPSSP 90
P PP PE L PS+P
Sbjct: 149 PPD-PPAPETLLAPPPLPSTP 168
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 31.6 bits (70), Expect = 0.96
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 57 GLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRD 116
GLK + P PPP PP P P LL+ P P G PP++ P C D
Sbjct: 211 GLKFNGP----PPP---PPPPPPHLLSCWLPPFPSG-----------PPIIPPPPPICPD 252
Query: 117 SLGTMQARVGVGAHIARW 134
SL A +G+ + W
Sbjct: 253 SLDDADA---LGSMLISW 267
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 31.6 bits (70), Expect = 0.96
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 57 GLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRD 116
GLK + P PPP PP P P LL+ P P G PP++ P C D
Sbjct: 211 GLKFNGP----PPP---PPPPPPHLLSCWLPPFPSG-----------PPIIPPPPPICPD 252
Query: 117 SLGTMQARVGVGAHIARW 134
SL A +G+ + W
Sbjct: 253 SLDDADA---LGSMLISW 267
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 31.6 bits (70), Expect = 0.96
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 57 GLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSLPLESCRD 116
GLK + P PPP PP P P LL+ P P G PP++ P C D
Sbjct: 211 GLKFNGP----PPP---PPPPPPHLLSCWLPPFPSG-----------PPIIPPPPPICPD 252
Query: 117 SLGTMQARVGVGAHIARW 134
SL A +G+ + W
Sbjct: 253 SLDDADA---LGSMLISW 267
>gi|47680169 3-phosphoinositide dependent protein kinase-1 isoform 2
[Homo sapiens]
Length = 429
Score = 31.6 bits (70), Expect = 0.96
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 55 AAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSL 109
A ++SS+ + SCP P+ + + E + G+ S G + G A PRP SL
Sbjct: 11 AVPIQSSVVLCSCPSPSMVRTQTESSTPPGIPGGSRQGPAMDGTAAEPRPGAGSL 65
>gi|4505695 3-phosphoinositide dependent protein kinase-1 isoform 1
[Homo sapiens]
Length = 556
Score = 31.6 bits (70), Expect = 0.96
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 55 AAGLKSSLPVLSCPPPATIPPRPEPTLLTGLCPSSPHGVGVWGILAFPRPPVLSL 109
A ++SS+ + SCP P+ + + E + G+ S G + G A PRP SL
Sbjct: 11 AVPIQSSVVLCSCPSPSMVRTQTESSTPPGIPGGSRQGPAMDGTAAEPRPGAGSL 65
>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
Length = 647
Score = 31.6 bits (70), Expect = 0.96
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 58 LKSSLPVLSCPPPATIPPRPEPTLLT--GLCPSSPHG 92
LK +P + PP A +PP P+P T CP++P G
Sbjct: 314 LKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAG 350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,550,435
Number of Sequences: 37866
Number of extensions: 869144
Number of successful extensions: 4585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 4341
Number of HSP's gapped (non-prelim): 289
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.